Wall clock time and date at job start Mon Mar 30 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.25091 * 2 1 4 4 C 1.50649 * 109.25381 * 119.47101 * 2 1 3 5 5 C 1.38960 * 117.69411 * 318.11791 * 4 2 1 6 6 C 1.37827 * 120.62409 * 180.02562 * 5 4 2 7 7 C 1.38761 * 119.71135 * 0.56909 * 6 5 4 8 8 O 1.35905 * 120.17431 * 179.61324 * 7 6 5 9 9 C 1.38425 * 119.65289 * 359.33108 * 7 6 5 10 10 C 1.37714 * 122.53704 * 138.23037 * 4 2 1 11 11 C 1.50643 * 122.55721 * 359.12991 * 10 4 2 12 12 C 1.52719 * 110.60419 * 17.81728 * 11 10 4 13 13 C 1.52725 * 109.25655 * 240.56750 * 2 1 3 14 14 H 1.08995 * 109.68221 * 308.24023 * 13 2 1 15 15 C 1.50703 * 109.68155 * 68.79591 * 13 2 1 16 16 H 1.07995 * 120.00164 * 0.02562 * 15 13 2 17 17 C 1.37879 * 120.00015 * 180.02562 * 15 13 2 18 18 N 1.31515 * 119.99686 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00431 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46507 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47247 * 119.99893 * 19 17 15 22 22 H 1.48498 * 109.47368 * 240.00180 * 19 17 15 23 23 H 1.09001 * 109.47408 * 300.52887 * 1 2 3 24 24 H 1.09001 * 109.47131 * 60.52833 * 1 2 3 25 25 H 1.08998 * 109.47012 * 180.52825 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.46718 * 3 2 1 27 27 H 1.08994 * 109.47255 * 299.47313 * 3 2 1 28 28 H 1.09005 * 109.46651 * 59.46912 * 3 2 1 29 29 H 1.08000 * 119.68369 * 0.33562 * 5 4 2 30 30 H 1.08005 * 120.14869 * 180.31064 * 6 5 4 31 31 H 0.96705 * 113.99576 * 269.72104 * 8 7 6 32 32 H 1.08006 * 119.74408 * 180.28081 * 9 7 6 33 33 H 1.09003 * 109.24992 * 138.10662 * 11 10 4 34 34 H 1.08996 * 109.24951 * 257.52746 * 11 10 4 35 35 H 1.09002 * 109.68024 * 189.19580 * 12 11 10 36 36 H 1.09004 * 109.71433 * 68.66860 * 12 11 10 37 37 H 0.97009 * 119.99757 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4445 0.0000 4 6 2.0268 -0.6997 1.2382 5 6 1.3749 -0.4332 2.4361 6 6 1.7796 -1.0396 3.6057 7 6 2.8555 -1.9158 3.5896 8 8 3.2675 -2.5129 4.7388 9 6 3.5034 -2.1828 2.3958 10 6 3.0885 -1.5766 1.2179 11 6 3.8292 -1.9236 -0.0471 12 6 3.5516 -0.8873 -1.1340 13 6 2.0337 -0.7085 -1.2557 14 1 1.5551 -1.6838 -1.3439 15 6 1.7166 0.1250 -2.4705 16 1 1.2053 1.0697 -2.3588 17 6 2.0791 -0.3184 -3.7247 18 7 2.7013 -1.4691 -3.8608 19 14 1.6855 0.7143 -5.2306 20 1 0.9862 1.9552 -4.8106 21 1 2.9460 1.0698 -5.9305 22 1 0.8117 -0.0606 -6.1478 23 1 -0.3634 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 3.1244 1.4487 0.0096 27 1 1.6769 1.9542 -0.8946 28 1 1.6613 1.9596 0.8853 29 1 0.5401 0.2519 2.4498 30 1 1.2642 -0.8307 4.5316 31 1 3.9406 -2.0142 5.2218 32 1 4.3381 -2.8680 2.3807 33 1 4.8992 -1.9505 0.1589 34 1 3.5061 -2.9047 -0.3951 35 1 3.9577 -1.2341 -2.0842 36 1 4.0124 0.0626 -0.8627 37 1 2.9567 -1.7810 -4.7432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260618871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:14 Heat of formation + Delta-G solvation = -38.979438 kcal Electronic energy + Delta-G solvation = -18363.074391 eV Core-core repulsion = 15683.411497 eV Total energy + Delta-G solvation = -2679.662895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03635 -37.87971 -35.26741 -33.39062 -32.27014 -29.22933 -28.72586 -26.43316 -26.16935 -24.11537 -22.40355 -21.47562 -20.18002 -18.31310 -17.37698 -16.15578 -15.52589 -15.34858 -14.70478 -14.38361 -13.82785 -13.63784 -12.98117 -12.83747 -12.56202 -12.37332 -12.27078 -11.77314 -11.41413 -11.24676 -11.03343 -10.80654 -10.64717 -10.56076 -10.36137 -10.35140 -10.23003 -9.79215 -9.46888 -8.86622 -8.60378 -8.36293 -8.26317 -7.86592 -5.97977 -4.02532 1.67266 1.75709 3.29315 3.38237 3.40719 4.00985 4.43625 4.48571 5.23940 5.30664 5.32319 5.42390 5.70775 5.84208 5.90728 5.95766 6.04544 6.24642 6.27523 6.33201 6.40789 6.44272 6.64061 6.69813 6.70907 6.76053 6.81605 6.93714 7.10130 7.12506 7.18696 7.24675 7.32258 7.54575 7.75966 7.87855 8.00312 8.11098 8.46869 9.00024 9.61271 11.08311 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039082 B = 0.006784 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.268466 B = 4126.539174 C = 4589.002029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.023 4.023 3 C -0.124 4.124 4 C -0.055 4.055 5 C -0.108 4.108 6 C -0.157 4.157 7 C 0.083 3.917 8 O -0.503 6.503 9 C -0.153 4.153 10 C -0.048 4.048 11 C -0.083 4.083 12 C -0.114 4.114 13 C 0.063 3.937 14 H 0.028 0.972 15 C -0.503 4.503 16 H 0.061 0.939 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.381 0.619 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 1.802 11.282 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 C -0.181 4.181 4 C -0.055 4.055 5 C -0.126 4.126 6 C -0.176 4.176 7 C 0.039 3.961 8 O -0.313 6.313 9 C -0.171 4.171 10 C -0.048 4.048 11 C -0.120 4.120 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.046 0.954 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.236 0.764 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.555 1.250 10.979 11.064 hybrid contribution 0.213 0.708 -0.553 0.924 sum 0.768 1.958 10.426 10.636 Atomic orbital electron populations 1.21844 0.95133 1.00954 1.00614 1.19571 0.94628 0.95103 0.92958 1.21848 1.00722 0.95145 1.00426 1.20030 0.94202 0.95862 0.95369 1.21147 0.99968 0.99728 0.91784 1.21191 0.98936 0.98659 0.98808 1.18302 0.96057 0.95956 0.85746 1.84823 1.61391 1.49583 1.35460 1.21414 1.01455 1.01894 0.92342 1.19832 0.95266 0.94805 0.94904 1.20640 0.97314 1.01268 0.92781 1.21705 1.00232 0.95405 0.97822 1.18668 0.91607 0.95546 0.89708 0.95367 1.21265 1.36803 1.05454 0.90632 0.92076 1.24959 0.95338 0.94966 0.98803 1.69901 1.40477 1.19710 1.22866 0.86633 0.78001 0.80518 0.83424 1.19841 1.21195 1.21202 0.94516 0.91552 0.93544 0.93170 0.91113 0.95207 0.85948 0.86369 0.76422 0.86250 0.92665 0.91136 0.88591 0.94354 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.82 37.16 0.29 -2.09 16 2 C -0.02 -0.45 0.41 -155.82 -0.06 -0.51 16 3 C -0.12 -2.34 7.80 37.16 0.29 -2.05 16 4 C -0.05 -1.02 4.71 -104.57 -0.49 -1.51 16 5 C -0.11 -1.78 8.91 -39.46 -0.35 -2.13 16 6 C -0.16 -2.40 9.99 -39.54 -0.40 -2.80 16 7 C 0.08 1.30 6.70 -39.32 -0.26 1.04 16 8 O -0.50 -6.79 13.51 -19.44 -0.26 -7.05 16 9 C -0.15 -2.55 9.55 -39.30 -0.38 -2.93 16 10 C -0.05 -0.90 5.74 -104.63 -0.60 -1.50 16 11 C -0.08 -1.63 5.67 -28.05 -0.16 -1.78 16 12 C -0.11 -2.57 5.10 -26.71 -0.14 -2.71 16 13 C 0.06 1.49 1.33 -91.74 -0.12 1.36 16 14 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 15 C -0.50 -12.87 7.13 -34.44 -0.25 -13.11 16 16 H 0.06 1.54 5.65 -52.49 -0.30 1.24 16 17 C 0.06 1.59 5.28 -17.82 -0.09 1.50 16 18 N -0.89 -24.58 11.40 55.43 0.63 -23.95 16 19 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.04 0.58 6.39 -51.93 -0.33 0.24 16 24 H 0.07 1.28 7.19 -51.93 -0.37 0.91 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.96 6.46 -51.93 -0.34 0.62 16 27 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 28 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.12 1.80 6.32 -52.49 -0.33 1.47 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.38 3.19 9.06 45.56 0.41 3.60 16 32 H 0.12 1.81 8.05 -52.48 -0.42 1.38 16 33 H 0.05 0.97 8.13 -51.93 -0.42 0.54 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.10 2.44 6.02 -51.93 -0.31 2.13 16 36 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -28.18 286.29 -7.35 -35.53 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.29 Total: 4.75 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -2.72 Total: -29.21 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.63 Total: -23.95 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.26 Total: -7.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.18 -7.35 -35.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260618871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.445 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds