Wall clock time and date at job start Mon Mar 30 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.25091 * 2 1 4 4 C 1.50649 * 109.25381 * 119.47101 * 2 1 3 5 5 C 1.38960 * 117.69411 * 318.11791 * 4 2 1 6 6 C 1.37827 * 120.62409 * 180.02562 * 5 4 2 7 7 C 1.38761 * 119.71135 * 0.56909 * 6 5 4 8 8 O 1.35905 * 120.17431 * 179.61324 * 7 6 5 9 9 C 1.38425 * 119.65289 * 359.33108 * 7 6 5 10 10 C 1.37714 * 122.53704 * 138.23037 * 4 2 1 11 11 C 1.50643 * 122.55721 * 359.12991 * 10 4 2 12 12 C 1.52719 * 110.60419 * 17.81728 * 11 10 4 13 13 C 1.52725 * 109.25655 * 240.56750 * 2 1 3 14 14 H 1.08995 * 109.68221 * 308.24023 * 13 2 1 15 15 C 1.50703 * 109.68155 * 68.79591 * 13 2 1 16 16 H 1.07995 * 120.00164 * 0.02562 * 15 13 2 17 17 C 1.37879 * 120.00015 * 180.02562 * 15 13 2 18 18 N 1.31515 * 119.99686 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00431 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46507 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47247 * 119.99893 * 19 17 15 22 22 H 1.48498 * 109.47368 * 240.00180 * 19 17 15 23 23 H 1.09001 * 109.47408 * 300.52887 * 1 2 3 24 24 H 1.09001 * 109.47131 * 60.52833 * 1 2 3 25 25 H 1.08998 * 109.47012 * 180.52825 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.46718 * 3 2 1 27 27 H 1.08994 * 109.47255 * 299.47313 * 3 2 1 28 28 H 1.09005 * 109.46651 * 59.46912 * 3 2 1 29 29 H 1.08000 * 119.68369 * 0.33562 * 5 4 2 30 30 H 1.08005 * 120.14869 * 180.31064 * 6 5 4 31 31 H 0.96705 * 113.99576 * 269.72104 * 8 7 6 32 32 H 1.08006 * 119.74408 * 180.28081 * 9 7 6 33 33 H 1.09003 * 109.24992 * 138.10662 * 11 10 4 34 34 H 1.08996 * 109.24951 * 257.52746 * 11 10 4 35 35 H 1.09002 * 109.68024 * 189.19580 * 12 11 10 36 36 H 1.09004 * 109.71433 * 68.66860 * 12 11 10 37 37 H 0.97009 * 119.99757 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4445 0.0000 4 6 2.0268 -0.6997 1.2382 5 6 1.3749 -0.4332 2.4361 6 6 1.7796 -1.0396 3.6057 7 6 2.8555 -1.9158 3.5896 8 8 3.2675 -2.5129 4.7388 9 6 3.5034 -2.1828 2.3958 10 6 3.0885 -1.5766 1.2179 11 6 3.8292 -1.9236 -0.0471 12 6 3.5516 -0.8873 -1.1340 13 6 2.0337 -0.7085 -1.2557 14 1 1.5551 -1.6838 -1.3439 15 6 1.7166 0.1250 -2.4705 16 1 1.2053 1.0697 -2.3588 17 6 2.0791 -0.3184 -3.7247 18 7 2.7013 -1.4691 -3.8608 19 14 1.6855 0.7143 -5.2306 20 1 0.9862 1.9552 -4.8106 21 1 2.9460 1.0698 -5.9305 22 1 0.8117 -0.0606 -6.1478 23 1 -0.3634 0.5220 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3633 -1.0276 0.0095 26 1 3.1244 1.4487 0.0096 27 1 1.6769 1.9542 -0.8946 28 1 1.6613 1.9596 0.8853 29 1 0.5401 0.2519 2.4498 30 1 1.2642 -0.8307 4.5316 31 1 3.9406 -2.0142 5.2218 32 1 4.3381 -2.8680 2.3807 33 1 4.8992 -1.9505 0.1589 34 1 3.5061 -2.9047 -0.3951 35 1 3.9577 -1.2341 -2.0842 36 1 4.0124 0.0626 -0.8627 37 1 2.9567 -1.7810 -4.7432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260618871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:13 Heat of formation + Delta-G solvation = -55.081019 kcal Electronic energy + Delta-G solvation = -18363.772608 eV Core-core repulsion = 15683.411497 eV Total energy + Delta-G solvation = -2680.361112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.41962 -39.17374 -36.65690 -34.93978 -34.11210 -30.71773 -30.14900 -27.95180 -27.85983 -25.84158 -23.79009 -22.98860 -21.68516 -19.78350 -18.68038 -18.06424 -17.02913 -16.60475 -16.20019 -16.03341 -15.25817 -15.10727 -14.58263 -14.35282 -14.13701 -13.85806 -13.83041 -13.20032 -12.93170 -12.80013 -12.67370 -12.54222 -12.27127 -12.21149 -12.04195 -11.90831 -11.72386 -11.35258 -11.23991 -10.58726 -10.41252 -10.28588 -9.61828 -9.18777 -8.01019 -6.11076 0.41768 0.47997 1.42135 1.45481 1.54822 2.48100 2.76490 3.27334 3.36638 3.92008 3.98045 4.12960 4.33051 4.35445 4.44104 4.54900 4.66292 4.66903 4.79013 4.89393 4.98104 5.07027 5.13253 5.19501 5.22406 5.35628 5.40464 5.46275 5.49646 5.55122 5.60221 5.61757 5.75333 6.01168 6.03395 6.07952 6.21673 6.49933 6.93462 6.99928 7.55390 9.04476 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039082 B = 0.006784 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.268466 B = 4126.539174 C = 4589.002029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.021 4.021 3 C -0.118 4.118 4 C -0.077 4.077 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.093 3.907 8 O -0.507 6.507 9 C -0.159 4.159 10 C -0.069 4.069 11 C -0.076 4.076 12 C -0.107 4.107 13 C 0.063 3.937 14 H -0.015 1.015 15 C -0.508 4.508 16 H 0.064 0.936 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.288 1.288 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.407 0.593 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 2.910 13.757 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.021 4.021 3 C -0.175 4.175 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.169 4.169 7 C 0.048 3.952 8 O -0.320 6.320 9 C -0.177 4.177 10 C -0.069 4.069 11 C -0.113 4.113 12 C -0.145 4.145 13 C 0.045 3.955 14 H 0.004 0.996 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.214 1.214 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.266 0.734 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.047 2.376 13.475 13.683 hybrid contribution 0.395 0.315 -1.217 1.317 sum 0.442 2.691 12.259 12.558 Atomic orbital electron populations 1.21798 0.94205 1.00562 1.01556 1.19442 0.95429 0.95406 0.91860 1.21763 1.00081 0.94518 1.01109 1.19979 0.95150 0.96896 0.95714 1.21293 0.99990 0.99950 0.91078 1.21500 0.98405 0.97535 0.99499 1.18352 0.95711 0.95086 0.86004 1.84762 1.62409 1.50162 1.34642 1.21502 1.02051 1.02023 0.92163 1.19751 0.96037 0.96284 0.94872 1.20474 0.98767 0.99273 0.92767 1.21501 0.99504 0.96184 0.97335 1.18562 0.91947 0.93559 0.91424 0.99638 1.21617 1.35877 1.05548 0.91524 0.91758 1.25692 0.95605 0.96000 1.01577 1.70051 1.41763 1.21244 1.23129 0.85701 0.77617 0.79334 0.80178 1.18802 1.21183 1.21397 0.91084 0.92949 0.94654 0.94108 0.92528 0.92222 0.83972 0.83369 0.73434 0.85157 0.90850 0.92830 0.92010 0.94294 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 7.82 71.98 0.56 -3.91 16 2 C -0.02 -0.84 0.41 -53.03 -0.02 -0.86 16 3 C -0.12 -4.28 7.80 71.98 0.56 -3.72 16 4 C -0.08 -2.79 4.71 -19.83 -0.09 -2.89 16 5 C -0.11 -3.10 8.91 22.35 0.20 -2.90 16 6 C -0.15 -3.98 9.99 22.30 0.22 -3.75 16 7 C 0.09 2.58 6.70 22.44 0.15 2.73 16 8 O -0.51 -11.61 13.51 -92.48 -1.25 -12.86 16 9 C -0.16 -5.00 9.55 22.45 0.21 -4.79 16 10 C -0.07 -2.55 5.74 -19.87 -0.11 -2.66 16 11 C -0.08 -3.05 5.67 29.74 0.17 -2.88 16 12 C -0.11 -5.05 5.10 30.61 0.16 -4.89 16 13 C 0.06 3.10 1.33 -11.52 -0.02 3.08 16 14 H -0.01 -0.82 8.08 -2.39 -0.02 -0.84 16 15 C -0.51 -26.63 7.13 25.60 0.18 -26.45 16 16 H 0.06 3.27 5.65 -2.91 -0.02 3.25 16 17 C 0.01 0.48 5.28 84.66 0.45 0.92 16 18 N -0.92 -53.07 11.40 21.45 0.24 -52.82 16 19 Si 0.94 43.17 29.54 68.60 2.03 45.19 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H 0.07 2.03 6.39 -2.39 -0.02 2.02 16 24 H 0.05 2.00 7.19 -2.39 -0.02 1.98 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.53 6.46 -2.39 -0.02 1.51 16 27 H 0.06 2.19 6.04 -2.39 -0.01 2.17 16 28 H 0.06 1.79 8.08 -2.38 -0.02 1.77 16 29 H 0.14 3.55 6.32 -2.91 -0.02 3.53 16 30 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.41 5.00 9.06 -74.05 -0.67 4.33 16 32 H 0.13 3.70 8.05 -2.91 -0.02 3.68 16 33 H 0.07 2.60 8.13 -2.39 -0.02 2.58 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 3.32 6.02 -2.39 -0.01 3.30 16 36 H 0.04 1.77 6.27 -2.39 -0.01 1.76 16 37 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -62.03 286.29 4.05 -57.98 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.41 Total: 15.49 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 2.62 Total: -52.98 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.24 Total: -52.82 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.25 Total: -12.86 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -62.03 4.05 -57.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260618871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.895 kcal (2) G-P(sol) polarization free energy of solvation -62.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds