Wall clock time and date at job start Mon Mar 30 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.25672 * 2 1 4 4 C 1.50652 * 109.25753 * 119.47113 * 2 1 3 5 5 C 1.38961 * 117.69207 * 282.72473 * 4 2 1 6 6 C 1.37825 * 120.62774 * 179.97438 * 5 4 2 7 7 C 1.38767 * 119.70986 * 359.39341 * 6 5 4 8 8 O 1.35899 * 120.17410 * 180.42447 * 7 6 5 9 9 C 1.38428 * 119.65259 * 0.40792 * 7 6 5 10 10 C 1.37717 * 122.53822 * 102.33744 * 4 2 1 11 11 C 1.50636 * 122.55896 * 0.87311 * 10 4 2 12 12 C 1.52727 * 110.60409 * 342.18256 * 11 10 4 13 13 C 1.52729 * 109.25413 * 240.56367 * 2 1 3 14 14 H 1.09006 * 109.68436 * 171.15354 * 13 2 1 15 15 C 1.50706 * 109.68237 * 50.63796 * 13 2 1 16 16 H 1.07996 * 119.99893 * 359.97438 * 15 13 2 17 17 C 1.37875 * 119.99845 * 180.02562 * 15 13 2 18 18 N 1.31507 * 120.00429 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99586 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47472 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47360 * 119.99448 * 19 17 15 22 22 H 1.48502 * 109.46955 * 239.99179 * 19 17 15 23 23 H 1.09006 * 109.46697 * 300.53148 * 1 2 3 24 24 H 1.08996 * 109.46910 * 60.52761 * 1 2 3 25 25 H 1.08992 * 109.47533 * 180.53190 * 1 2 3 26 26 H 1.08991 * 109.47455 * 179.47551 * 3 2 1 27 27 H 1.09005 * 109.46584 * 299.47232 * 3 2 1 28 28 H 1.09001 * 109.46797 * 59.46951 * 3 2 1 29 29 H 1.08005 * 119.68651 * 359.70208 * 5 4 2 30 30 H 1.08002 * 120.14904 * 179.67765 * 6 5 4 31 31 H 0.96700 * 114.00044 * 90.00335 * 8 7 6 32 32 H 1.07994 * 119.74742 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.25045 * 102.47026 * 11 10 4 34 34 H 1.09000 * 109.25210 * 221.89012 * 11 10 4 35 35 H 1.09005 * 109.68373 * 291.34885 * 12 11 10 36 36 H 1.09004 * 109.71112 * 170.81942 * 12 11 10 37 37 H 0.97001 * 120.00315 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0346 1.4444 0.0000 4 6 2.0268 -0.6997 1.2382 5 6 1.9840 0.0013 2.4373 6 6 2.4228 -0.5808 3.6070 7 6 2.9004 -1.8835 3.5899 8 8 3.3273 -2.4697 4.7392 9 6 2.9393 -2.5831 2.3960 10 6 2.5053 -1.9909 1.2178 11 6 2.5896 -2.8043 -0.0473 12 6 1.7027 -2.2008 -1.1344 13 6 2.0336 -0.7086 -1.2557 14 1 3.1121 -0.5771 -1.3439 15 6 1.3513 -0.1345 -2.4707 16 1 0.6276 0.6593 -2.3590 17 6 1.6504 -0.6233 -3.7247 18 7 2.5314 -1.5902 -3.8607 19 14 0.8042 0.0879 -5.2306 20 1 -0.1373 1.1568 -4.8108 21 1 1.8232 0.6577 -6.1482 22 1 0.0536 -0.9858 -5.9299 23 1 -0.3633 0.5221 0.8852 24 1 -0.3633 0.5056 -0.8947 25 1 -0.3634 -1.0275 0.0095 26 1 3.1244 1.4486 0.0094 27 1 1.6770 1.9541 -0.8947 28 1 1.6615 1.9596 0.8852 29 1 1.6073 1.0134 2.4520 30 1 2.3908 -0.0270 4.5337 31 1 2.6341 -2.9407 5.2216 32 1 3.3103 -3.5972 2.3810 33 1 3.6225 -2.8221 -0.3950 34 1 2.2627 -3.8236 0.1583 35 1 0.6542 -2.3233 -0.8629 36 1 1.8962 -2.6981 -2.0849 37 1 2.7420 -1.9339 -4.7430 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260618875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:15 Heat of formation + Delta-G solvation = -55.107946 kcal Electronic energy + Delta-G solvation = -18363.802242 eV Core-core repulsion = 15683.439963 eV Total energy + Delta-G solvation = -2680.362279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41910 -39.17432 -36.65682 -34.93992 -34.11285 -30.71759 -30.14842 -27.95264 -27.85941 -25.84169 -23.78962 -22.98867 -21.68546 -19.78479 -18.68058 -18.06408 -17.02966 -16.60483 -16.20028 -16.03233 -15.25907 -15.10595 -14.58129 -14.35284 -14.13579 -13.85767 -13.83022 -13.20111 -12.93180 -12.80051 -12.67505 -12.54233 -12.27177 -12.21195 -12.04215 -11.90814 -11.72342 -11.35272 -11.24083 -10.58773 -10.41154 -10.28583 -9.61841 -9.18796 -8.00964 -6.11077 0.41741 0.47977 1.42122 1.45496 1.54814 2.48091 2.76435 3.27369 3.36815 3.92034 3.98033 4.12927 4.33126 4.35419 4.44068 4.54894 4.66331 4.66887 4.78989 4.89428 4.98108 5.07008 5.13278 5.19457 5.22376 5.35614 5.40475 5.46257 5.49670 5.55135 5.60243 5.61725 5.75315 6.01153 6.03373 6.07950 6.21729 6.49948 6.93556 6.99932 7.55421 9.04526 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.006784 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.222601 B = 4126.433503 C = 4589.113182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 C -0.124 4.124 4 C -0.077 4.077 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.093 3.907 8 O -0.507 6.507 9 C -0.159 4.159 10 C -0.069 4.069 11 C -0.076 4.076 12 C -0.107 4.107 13 C 0.063 3.937 14 H -0.014 1.014 15 C -0.508 4.508 16 H 0.064 0.936 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.286 1.286 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.407 0.593 32 H 0.130 0.870 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 0.598 13.759 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.021 4.021 3 C -0.181 4.181 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.169 4.169 7 C 0.048 3.952 8 O -0.320 6.320 9 C -0.177 4.177 10 C -0.069 4.069 11 C -0.113 4.113 12 C -0.145 4.145 13 C 0.045 3.955 14 H 0.004 0.996 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.772 3.228 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.212 1.212 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.266 0.734 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.273 0.732 13.477 13.687 hybrid contribution -0.427 -0.268 -1.218 1.318 sum -2.700 0.465 12.259 12.562 Atomic orbital electron populations 1.21760 0.93718 1.00878 1.01113 1.19442 0.95889 0.94943 0.91861 1.21798 0.99638 0.95129 1.01553 1.19981 0.98500 0.93547 0.95711 1.21292 0.99383 1.00565 0.91064 1.21502 1.00618 0.95324 0.99499 1.18354 0.98447 0.92354 0.85998 1.84759 1.40184 1.72389 1.34646 1.21502 1.02932 1.01135 0.92166 1.19751 0.97884 0.94438 0.94870 1.20474 1.00030 0.98012 0.92767 1.21503 0.96596 0.99086 0.97340 1.18566 0.93673 0.91835 0.91425 0.99634 1.21618 1.23000 1.18427 0.91528 0.91760 1.25687 0.95964 0.95634 1.01574 1.70042 1.34707 1.28302 1.23134 0.85703 0.78505 0.78449 0.80184 1.18803 1.21397 1.21186 0.92213 0.92529 0.94110 0.94658 0.92949 0.91092 0.83976 0.83364 0.73438 0.85159 0.92832 0.90849 0.94305 0.91993 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 7.80 71.98 0.56 -3.72 16 2 C -0.02 -0.84 0.41 -53.03 -0.02 -0.86 16 3 C -0.12 -4.48 7.82 71.98 0.56 -3.91 16 4 C -0.08 -2.79 4.71 -19.83 -0.09 -2.89 16 5 C -0.11 -3.10 8.90 22.35 0.20 -2.90 16 6 C -0.15 -3.97 9.99 22.30 0.22 -3.75 16 7 C 0.09 2.58 6.70 22.44 0.15 2.73 16 8 O -0.51 -11.61 13.51 -92.41 -1.25 -12.86 16 9 C -0.16 -5.00 9.55 22.46 0.21 -4.79 16 10 C -0.07 -2.55 5.74 -19.87 -0.11 -2.66 16 11 C -0.08 -3.05 5.67 29.74 0.17 -2.88 16 12 C -0.11 -5.05 5.10 30.61 0.16 -4.90 16 13 C 0.06 3.10 1.33 -11.52 -0.02 3.08 16 14 H -0.01 -0.82 8.09 -2.38 -0.02 -0.84 16 15 C -0.51 -26.63 7.13 25.60 0.18 -26.45 16 16 H 0.06 3.27 5.65 -2.91 -0.02 3.25 16 17 C 0.01 0.48 5.28 84.66 0.45 0.93 16 18 N -0.92 -53.06 11.40 21.45 0.24 -52.81 16 19 Si 0.94 43.16 29.54 68.60 2.03 45.19 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H 0.06 1.79 8.07 -2.38 -0.02 1.77 16 24 H 0.06 2.18 6.04 -2.39 -0.01 2.17 16 25 H 0.04 1.53 6.47 -2.39 -0.02 1.51 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 2.00 7.19 -2.38 -0.02 1.98 16 28 H 0.07 2.03 6.40 -2.39 -0.02 2.02 16 29 H 0.14 3.55 6.33 -2.91 -0.02 3.53 16 30 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.41 5.00 9.06 -74.06 -0.67 4.33 16 32 H 0.13 3.70 8.05 -2.91 -0.02 3.68 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 35 H 0.04 1.77 6.27 -2.38 -0.01 1.75 16 36 H 0.06 3.33 6.02 -2.38 -0.01 3.31 16 37 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -62.02 286.29 4.05 -57.97 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.41 Total: 15.48 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 2.62 Total: -52.97 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.24 Total: -52.81 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.25 Total: -12.86 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -62.02 4.05 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260618875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.862 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds