Wall clock time and date at job start Mon Mar 30 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.22409 * 2 1 4 4 C 1.50629 * 109.25663 * 240.55218 * 2 1 3 5 5 C 1.39397 * 117.75277 * 77.21177 * 4 2 1 6 6 O 1.35893 * 119.78942 * 0.60137 * 5 4 2 7 7 C 1.38439 * 120.42340 * 180.57408 * 5 4 2 8 8 C 1.38170 * 119.70645 * 359.97438 * 7 5 4 9 9 C 1.37961 * 119.83687 * 359.87271 * 8 7 5 10 10 C 1.37575 * 122.58890 * 257.56062 * 4 2 1 11 11 C 1.50637 * 122.55455 * 359.23967 * 10 4 2 12 12 C 1.52725 * 110.60758 * 17.75410 * 11 10 4 13 13 C 1.52737 * 109.25765 * 119.45973 * 2 1 3 14 14 H 1.08999 * 109.71517 * 188.88558 * 13 2 1 15 15 C 1.50695 * 109.68238 * 309.42873 * 13 2 1 16 16 H 1.08001 * 120.00395 * 4.47655 * 15 13 2 17 17 C 1.37884 * 119.99992 * 184.47316 * 15 13 2 18 18 N 1.31516 * 119.99868 * 195.28117 * 17 15 13 19 19 Si 1.86794 * 119.99629 * 15.00905 * 17 15 13 20 20 H 1.48502 * 109.46951 * 180.27200 * 19 17 15 21 21 H 1.48498 * 109.47506 * 300.27427 * 19 17 15 22 22 H 1.48504 * 109.47221 * 60.27595 * 19 17 15 23 23 H 1.09008 * 109.46617 * 300.54570 * 1 2 3 24 24 H 1.09000 * 109.47203 * 60.53853 * 1 2 3 25 25 H 1.08997 * 109.47253 * 180.54692 * 1 2 3 26 26 H 1.08997 * 109.46975 * 196.01319 * 3 2 1 27 27 H 1.08994 * 109.47144 * 316.02238 * 3 2 1 28 28 H 1.09003 * 109.46515 * 76.01785 * 3 2 1 29 29 H 0.96706 * 114.00057 * 95.51634 * 6 5 4 30 30 H 1.07997 * 120.14386 * 180.02562 * 7 5 4 31 31 H 1.08007 * 120.08220 * 179.85166 * 8 7 5 32 32 H 1.07997 * 119.66607 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.25021 * 257.45776 * 11 10 4 34 34 H 1.09004 * 109.24596 * 138.04457 * 11 10 4 35 35 H 1.09002 * 109.68071 * 189.21646 * 12 11 10 36 36 H 1.09001 * 109.67732 * 68.66563 * 12 11 10 37 37 H 0.96998 * 119.99900 * 354.66896 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0338 1.4447 0.0000 4 6 2.0267 -0.6991 -1.2383 5 6 1.9830 0.0029 -2.4418 6 8 1.5143 1.2783 -2.4628 7 6 2.4146 -0.5906 -3.6157 8 6 2.8919 -1.8870 -3.5922 9 6 2.9378 -2.5801 -2.4002 10 6 2.5068 -1.9882 -1.2193 11 6 2.5915 -2.8031 0.0449 12 6 1.7041 -2.2015 1.1326 13 6 2.0337 -0.7091 1.2555 14 1 3.1120 -0.5774 1.3445 15 6 1.3504 -0.1367 2.4705 16 1 0.5744 0.6054 2.3542 17 6 1.7158 -0.5604 3.7307 18 7 0.9404 -0.3033 4.7614 19 14 3.3083 -1.5062 3.9727 20 1 3.4664 -1.8501 5.4087 21 1 3.2713 -2.7526 3.1664 22 1 4.4533 -0.6676 3.5356 23 1 -0.3633 0.5223 0.8851 24 1 -0.3633 0.5054 -0.8948 25 1 -0.3633 -1.0276 0.0098 26 1 3.0861 1.4625 -0.2835 27 1 1.4551 2.0313 -0.7135 28 1 1.9189 1.8695 0.9973 29 1 2.2055 1.9524 -2.4064 30 1 2.3791 -0.0424 -4.5455 31 1 3.2279 -2.3568 -4.5049 32 1 3.3117 -3.5931 -2.3850 33 1 3.6244 -2.8206 0.3926 34 1 2.2653 -3.8224 -0.1621 35 1 1.8987 -2.6998 2.0823 36 1 0.6558 -2.3248 0.8608 37 1 0.1517 0.2499 4.6489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260650326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:26 Heat of formation + Delta-G solvation = -30.010961 kcal Electronic energy + Delta-G solvation = -18813.747998 eV Core-core repulsion = 16134.474006 eV Total energy + Delta-G solvation = -2679.273993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39868 -37.16036 -36.38075 -32.61219 -32.49598 -29.85079 -28.96751 -26.47701 -26.27460 -23.70263 -22.30368 -21.30643 -20.65663 -18.08937 -17.49995 -17.07488 -15.68698 -15.59474 -14.73724 -14.30542 -13.92737 -13.49425 -13.40390 -12.97738 -12.77115 -12.61975 -11.89988 -11.76531 -11.65493 -11.27815 -11.10414 -10.90956 -10.77528 -10.64309 -10.47476 -10.27162 -9.91644 -9.64772 -9.53824 -8.95357 -8.61922 -8.23027 -8.16041 -8.09558 -6.37164 -3.97956 1.53009 1.67540 3.39996 3.45092 3.62842 3.89988 4.52154 4.53185 5.10932 5.11488 5.27171 5.33601 5.55604 5.67917 5.77340 5.82295 5.95005 6.05238 6.11392 6.13615 6.33208 6.42841 6.51676 6.55647 6.61485 6.68786 6.71714 6.81456 6.87993 6.93794 7.03864 7.09337 7.17851 7.31463 7.38356 7.61189 7.93925 8.23295 8.45564 8.98272 9.69207 11.02145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.009079 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.687293 B = 3083.417647 C = 3660.550851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.003 4.003 3 C -0.144 4.144 4 C -0.071 4.071 5 C 0.104 3.896 6 O -0.492 6.492 7 C -0.162 4.162 8 C -0.118 4.118 9 C -0.136 4.136 10 C -0.055 4.055 11 C -0.087 4.087 12 C -0.128 4.128 13 C 0.032 3.968 14 H 0.020 0.980 15 C -0.585 4.585 16 H 0.064 0.936 17 C 0.027 3.973 18 N -0.913 5.913 19 Si 1.043 2.957 20 H -0.289 1.289 21 H -0.273 1.273 22 H -0.286 1.286 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.383 0.617 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -1.632 -14.144 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.003 4.003 3 C -0.201 4.201 4 C -0.072 4.072 5 C 0.059 3.941 6 O -0.303 6.303 7 C -0.181 4.181 8 C -0.136 4.136 9 C -0.154 4.154 10 C -0.055 4.055 11 C -0.124 4.124 12 C -0.165 4.165 13 C 0.013 3.987 14 H 0.038 0.962 15 C -0.623 4.623 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.872 3.128 20 H -0.215 1.215 21 H -0.199 1.199 22 H -0.212 1.212 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.240 0.760 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.953 -2.689 -13.038 14.204 hybrid contribution -0.398 0.976 -1.293 1.668 sum 4.555 -1.714 -14.332 15.136 Atomic orbital electron populations 1.21799 0.94173 1.00955 1.00796 1.19226 0.95548 0.94350 0.91160 1.22116 0.98797 0.96286 1.02888 1.20339 0.97695 0.94083 0.95056 1.18509 0.97845 0.85823 0.91877 1.84885 1.36434 1.13336 1.95677 1.21270 1.02430 0.96658 0.97732 1.20778 1.00759 0.94412 0.97694 1.21158 1.01904 0.99979 0.92383 1.19720 0.96977 0.93527 0.95319 1.20636 1.01180 0.97425 0.93112 1.22183 0.98404 0.99225 0.96700 1.19046 0.95837 0.90773 0.93090 0.96216 1.22061 1.22645 1.26884 0.90732 0.91844 1.25699 1.01769 0.97645 0.92556 1.70856 1.14763 1.35480 1.33705 0.84083 0.76017 0.76935 0.75749 1.21532 1.19922 1.21220 0.91309 0.94314 0.93709 0.94718 0.91727 0.91315 0.76033 0.86243 0.86404 0.86486 0.91298 0.91879 0.91421 0.92456 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 7.71 37.16 0.29 -2.18 16 2 C 0.00 -0.06 0.32 -155.83 -0.05 -0.11 16 3 C -0.14 -2.67 7.12 37.16 0.26 -2.41 16 4 C -0.07 -1.31 4.65 -104.47 -0.49 -1.79 16 5 C 0.10 1.69 6.29 -39.08 -0.25 1.44 16 6 O -0.49 -7.32 9.78 -19.40 -0.19 -7.51 16 7 C -0.16 -2.31 9.98 -39.53 -0.39 -2.70 16 8 C -0.12 -1.59 10.04 -39.71 -0.40 -1.99 16 9 C -0.14 -2.01 9.60 -39.42 -0.38 -2.39 16 10 C -0.06 -0.97 5.74 -104.63 -0.60 -1.57 16 11 C -0.09 -1.55 5.67 -28.05 -0.16 -1.71 16 12 C -0.13 -2.73 4.84 -26.70 -0.13 -2.86 16 13 C 0.03 0.72 0.90 -91.74 -0.08 0.64 16 14 H 0.02 0.47 6.83 -51.93 -0.35 0.12 16 15 C -0.59 -15.62 7.24 -34.44 -0.25 -15.87 16 16 H 0.06 1.81 6.02 -52.49 -0.32 1.49 16 17 C 0.03 0.77 5.32 -17.82 -0.09 0.68 16 18 N -0.91 -27.63 13.70 55.43 0.76 -26.87 16 19 Si 1.04 24.95 26.24 -169.99 -4.46 20.49 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.27 -5.97 5.67 56.52 0.32 -5.65 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.07 1.52 6.02 -51.92 -0.31 1.21 16 24 H 0.04 0.74 7.46 -51.93 -0.39 0.35 16 25 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 26 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 27 H 0.06 1.06 5.36 -51.93 -0.28 0.78 16 28 H 0.07 1.43 7.04 -51.93 -0.37 1.06 16 29 H 0.38 4.20 8.00 45.56 0.36 4.56 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.46 8.05 -52.49 -0.42 1.03 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 35 H 0.07 1.53 4.74 -51.93 -0.25 1.28 16 36 H 0.06 1.24 6.25 -51.93 -0.32 0.92 16 37 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 LS Contribution 276.36 15.07 4.16 4.16 Total: -1.00 -29.88 276.36 -6.76 -36.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.32 Total: 5.92 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: -2.72 Total: -32.83 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.76 Total: -26.87 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.19 Total: -7.51 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.46 Total: 20.49 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.88 -6.76 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.629 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds