Wall clock time and date at job start Mon Mar 30 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.22409 * 2 1 4 4 C 1.50629 * 109.25663 * 240.55218 * 2 1 3 5 5 C 1.39397 * 117.75277 * 77.21177 * 4 2 1 6 6 O 1.35893 * 119.78942 * 0.60137 * 5 4 2 7 7 C 1.38439 * 120.42340 * 180.57408 * 5 4 2 8 8 C 1.38170 * 119.70645 * 359.97438 * 7 5 4 9 9 C 1.37961 * 119.83687 * 359.87271 * 8 7 5 10 10 C 1.37575 * 122.58890 * 257.56062 * 4 2 1 11 11 C 1.50637 * 122.55455 * 359.23967 * 10 4 2 12 12 C 1.52725 * 110.60758 * 17.75410 * 11 10 4 13 13 C 1.52737 * 109.25765 * 119.45973 * 2 1 3 14 14 H 1.08999 * 109.71517 * 188.88558 * 13 2 1 15 15 C 1.50695 * 109.68238 * 309.42873 * 13 2 1 16 16 H 1.08001 * 120.00395 * 4.47655 * 15 13 2 17 17 C 1.37884 * 119.99992 * 184.47316 * 15 13 2 18 18 N 1.31516 * 119.99868 * 195.28117 * 17 15 13 19 19 Si 1.86794 * 119.99629 * 15.00905 * 17 15 13 20 20 H 1.48502 * 109.46951 * 180.27200 * 19 17 15 21 21 H 1.48498 * 109.47506 * 300.27427 * 19 17 15 22 22 H 1.48504 * 109.47221 * 60.27595 * 19 17 15 23 23 H 1.09008 * 109.46617 * 300.54570 * 1 2 3 24 24 H 1.09000 * 109.47203 * 60.53853 * 1 2 3 25 25 H 1.08997 * 109.47253 * 180.54692 * 1 2 3 26 26 H 1.08997 * 109.46975 * 196.01319 * 3 2 1 27 27 H 1.08994 * 109.47144 * 316.02238 * 3 2 1 28 28 H 1.09003 * 109.46515 * 76.01785 * 3 2 1 29 29 H 0.96706 * 114.00057 * 95.51634 * 6 5 4 30 30 H 1.07997 * 120.14386 * 180.02562 * 7 5 4 31 31 H 1.08007 * 120.08220 * 179.85166 * 8 7 5 32 32 H 1.07997 * 119.66607 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.25021 * 257.45776 * 11 10 4 34 34 H 1.09004 * 109.24596 * 138.04457 * 11 10 4 35 35 H 1.09002 * 109.68071 * 189.21646 * 12 11 10 36 36 H 1.09001 * 109.67732 * 68.66563 * 12 11 10 37 37 H 0.96998 * 119.99900 * 354.66896 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0338 1.4447 0.0000 4 6 2.0267 -0.6991 -1.2383 5 6 1.9830 0.0029 -2.4418 6 8 1.5143 1.2783 -2.4628 7 6 2.4146 -0.5906 -3.6157 8 6 2.8919 -1.8870 -3.5922 9 6 2.9378 -2.5801 -2.4002 10 6 2.5068 -1.9882 -1.2193 11 6 2.5915 -2.8031 0.0449 12 6 1.7041 -2.2015 1.1326 13 6 2.0337 -0.7091 1.2555 14 1 3.1120 -0.5774 1.3445 15 6 1.3504 -0.1367 2.4705 16 1 0.5744 0.6054 2.3542 17 6 1.7158 -0.5604 3.7307 18 7 0.9404 -0.3033 4.7614 19 14 3.3083 -1.5062 3.9727 20 1 3.4664 -1.8501 5.4087 21 1 3.2713 -2.7526 3.1664 22 1 4.4533 -0.6676 3.5356 23 1 -0.3633 0.5223 0.8851 24 1 -0.3633 0.5054 -0.8948 25 1 -0.3633 -1.0276 0.0098 26 1 3.0861 1.4625 -0.2835 27 1 1.4551 2.0313 -0.7135 28 1 1.9189 1.8695 0.9973 29 1 2.2055 1.9524 -2.4064 30 1 2.3791 -0.0424 -4.5455 31 1 3.2279 -2.3568 -4.5049 32 1 3.3117 -3.5931 -2.3850 33 1 3.6244 -2.8206 0.3926 34 1 2.2653 -3.8224 -0.1621 35 1 1.8987 -2.6998 2.0823 36 1 0.6558 -2.3248 0.8608 37 1 0.1517 0.2499 4.6489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:26 Heat of formation + Delta-G solvation = -48.735348 kcal Electronic energy + Delta-G solvation = -18814.559949 eV Core-core repulsion = 16134.474006 eV Total energy + Delta-G solvation = -2680.085943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.71308 -38.53886 -37.64443 -34.56704 -34.01280 -31.37317 -30.16651 -28.18892 -27.87073 -25.35355 -23.65573 -22.84248 -22.03064 -19.92102 -18.90264 -18.66270 -17.03135 -16.82407 -16.14890 -15.74386 -15.48317 -15.17218 -14.87818 -14.53798 -14.23789 -14.01100 -13.53473 -13.34944 -12.98093 -12.91667 -12.61593 -12.43823 -12.40470 -12.20898 -11.97477 -11.92603 -11.58542 -11.41471 -11.24224 -10.66555 -10.46592 -10.18533 -9.43555 -9.31872 -8.62281 -6.22559 0.40775 0.50741 1.46016 1.53094 1.71894 2.53304 2.77340 3.15978 3.41160 3.85834 3.88780 4.17660 4.18535 4.22904 4.41807 4.52163 4.56661 4.62152 4.70910 4.76004 4.87233 4.95561 5.03421 5.06601 5.15438 5.17815 5.28321 5.31278 5.39431 5.43251 5.53277 5.57503 5.70270 5.81279 5.92196 6.04582 6.15781 6.24984 6.71870 6.91604 7.52642 8.75711 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.009079 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.687293 B = 3083.417647 C = 3660.550851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.003 4.003 3 C -0.137 4.137 4 C -0.101 4.101 5 C 0.097 3.903 6 O -0.502 6.502 7 C -0.159 4.159 8 C -0.107 4.107 9 C -0.135 4.135 10 C -0.075 4.075 11 C -0.082 4.082 12 C -0.126 4.126 13 C 0.030 3.970 14 H 0.016 0.984 15 C -0.575 4.575 16 H 0.030 0.970 17 C -0.027 4.027 18 N -0.950 5.950 19 Si 1.077 2.923 20 H -0.297 1.297 21 H -0.238 1.238 22 H -0.270 1.270 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.033 0.967 29 H 0.400 0.600 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -3.111 -17.726 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.004 4.004 3 C -0.194 4.194 4 C -0.102 4.102 5 C 0.053 3.947 6 O -0.315 6.315 7 C -0.177 4.177 8 C -0.125 4.125 9 C -0.153 4.153 10 C -0.076 4.076 11 C -0.118 4.118 12 C -0.163 4.163 13 C 0.011 3.989 14 H 0.034 0.966 15 C -0.613 4.613 16 H 0.048 0.952 17 C -0.224 4.224 18 N -0.588 5.588 19 Si 0.900 3.100 20 H -0.224 1.224 21 H -0.162 1.162 22 H -0.196 1.196 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.052 0.948 29 H 0.259 0.741 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.021 -4.156 -16.654 18.545 hybrid contribution -1.114 1.522 -0.283 1.907 sum 5.907 -2.634 -16.937 18.130 Atomic orbital electron populations 1.21676 0.95257 0.99997 0.99799 1.19103 0.94725 0.95125 0.91398 1.22056 1.00168 0.95729 1.01437 1.20176 1.00302 0.95065 0.94617 1.18587 0.98001 0.86172 0.91923 1.84822 1.37606 1.13523 1.95576 1.21586 1.01191 0.97178 0.97791 1.21236 0.98750 0.93847 0.98619 1.21416 1.01086 1.01166 0.91617 1.19794 0.98232 0.93371 0.96156 1.20570 1.00566 0.98541 0.92164 1.22018 0.98715 0.97952 0.97656 1.18995 0.94919 0.92244 0.92739 0.96622 1.22288 1.21154 1.25231 0.92603 0.95178 1.27037 1.04048 0.98678 0.92595 1.70993 1.15368 1.37593 1.34861 0.83683 0.72859 0.77675 0.75826 1.22366 1.16219 1.19582 0.94376 0.93027 0.94560 0.93168 0.89571 0.94763 0.74128 0.83649 0.82674 0.83850 0.90504 0.89422 0.92919 0.93726 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 7.71 71.98 0.55 -4.10 16 2 C 0.00 -0.14 0.32 -53.04 -0.02 -0.16 16 3 C -0.14 -5.08 7.12 71.98 0.51 -4.57 16 4 C -0.10 -3.50 4.65 -19.76 -0.09 -3.59 16 5 C 0.10 2.86 6.29 22.60 0.14 3.00 16 6 O -0.50 -13.58 9.78 -92.34 -0.90 -14.48 16 7 C -0.16 -3.75 9.98 22.30 0.22 -3.53 16 8 C -0.11 -2.27 10.04 22.19 0.22 -2.05 16 9 C -0.14 -3.33 9.60 22.37 0.21 -3.11 16 10 C -0.08 -2.41 5.74 -19.87 -0.11 -2.52 16 11 C -0.08 -2.70 5.67 29.74 0.17 -2.53 16 12 C -0.13 -5.32 4.84 30.61 0.15 -5.17 16 13 C 0.03 1.39 0.90 -11.52 -0.01 1.38 16 14 H 0.02 0.74 6.83 -2.39 -0.02 0.73 16 15 C -0.57 -32.10 7.24 25.60 0.19 -31.91 16 16 H 0.03 1.85 6.02 -2.91 -0.02 1.83 16 17 C -0.03 -1.58 5.32 84.66 0.45 -1.13 16 18 N -0.95 -60.43 13.70 21.45 0.29 -60.14 16 19 Si 1.08 50.55 26.24 68.60 1.80 52.35 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.24 -9.78 5.67 99.48 0.56 -9.22 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H 0.04 1.79 6.02 -2.38 -0.01 1.77 16 24 H 0.05 1.99 7.46 -2.39 -0.02 1.97 16 25 H 0.04 1.54 6.43 -2.39 -0.02 1.52 16 26 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 27 H 0.09 2.76 5.36 -2.39 -0.01 2.75 16 28 H 0.03 1.46 7.04 -2.39 -0.02 1.45 16 29 H 0.40 7.62 8.00 -74.05 -0.59 7.03 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.14 2.74 8.05 -2.91 -0.02 2.71 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 2.44 8.12 -2.38 -0.02 2.42 16 35 H 0.05 2.34 4.74 -2.39 -0.01 2.33 16 36 H 0.04 1.96 6.25 -2.39 -0.01 1.94 16 37 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 Total: -1.00 -67.81 276.36 4.09 -63.72 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.31 Total: 18.54 kcal Atomic # 6 Polarization: -62.58 SS G_CDS: 2.59 Total: -60.00 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.29 Total: -60.14 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.90 Total: -14.48 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.80 Total: 52.35 kcal Total: -67.81 4.09 -63.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.989 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds