Wall clock time and date at job start Mon Mar 30 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.22019 * 2 1 4 4 C 1.50620 * 109.25246 * 119.44719 * 2 1 3 5 5 C 1.39393 * 117.76348 * 282.59515 * 4 2 1 6 6 O 1.35902 * 119.78588 * 359.75424 * 5 4 2 7 7 C 1.38440 * 120.42855 * 179.77017 * 5 4 2 8 8 C 1.38169 * 119.70998 * 359.96358 * 7 5 4 9 9 C 1.37957 * 119.83249 * 0.10573 * 8 7 5 10 10 C 1.37578 * 122.58715 * 102.53061 * 4 2 1 11 11 C 1.50634 * 122.55875 * 0.72872 * 10 4 2 12 12 C 1.52731 * 110.59042 * 342.20272 * 11 10 4 13 13 C 1.52740 * 109.24945 * 240.55763 * 2 1 3 14 14 H 1.09000 * 109.68340 * 171.05711 * 13 2 1 15 15 C 1.50702 * 109.68322 * 50.49786 * 13 2 1 16 16 H 1.08003 * 119.99736 * 0.02562 * 15 13 2 17 17 C 1.37868 * 119.99767 * 180.02562 * 15 13 2 18 18 N 1.31518 * 120.00391 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99971 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47144 * 59.99491 * 19 17 15 21 21 H 1.48496 * 109.47464 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47123 * 300.00050 * 19 17 15 23 23 H 1.08999 * 109.47275 * 300.55331 * 1 2 3 24 24 H 1.09004 * 109.47039 * 60.54993 * 1 2 3 25 25 H 1.08995 * 109.47660 * 180.55487 * 1 2 3 26 26 H 1.09000 * 109.46920 * 164.37724 * 3 2 1 27 27 H 1.08999 * 109.47127 * 284.37824 * 3 2 1 28 28 H 1.09001 * 109.47139 * 44.37749 * 3 2 1 29 29 H 0.96694 * 114.00384 * 89.99528 * 6 5 4 30 30 H 1.07995 * 120.14241 * 179.97438 * 7 5 4 31 31 H 1.08004 * 120.08309 * 180.13166 * 8 7 5 32 32 H 1.07996 * 119.66920 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.25525 * 102.48275 * 11 10 4 34 34 H 1.08997 * 109.25441 * 221.95235 * 11 10 4 35 35 H 1.09004 * 109.68163 * 170.84085 * 12 11 10 36 36 H 1.09001 * 109.68287 * 291.35071 * 12 11 10 37 37 H 0.97002 * 119.99745 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4447 0.0000 4 6 2.0266 -0.6991 1.2383 5 6 1.9868 0.0042 2.4411 6 8 1.5149 1.2785 2.4628 7 6 2.4251 -0.5869 3.6137 8 6 2.9041 -1.8826 3.5900 9 6 2.9446 -2.5776 2.3990 10 6 2.5084 -1.9876 1.2189 11 6 2.5944 -2.8020 -0.0454 12 6 1.7056 -2.2015 -1.1327 13 6 2.0335 -0.7088 -1.2558 14 1 3.1117 -0.5760 -1.3450 15 6 1.3487 -0.1372 -2.4704 16 1 0.6241 0.6559 -2.3586 17 6 1.6472 -0.6266 -3.7243 18 7 2.5300 -1.5919 -3.8604 19 14 0.7990 0.0825 -5.2300 20 1 1.0994 1.5333 -5.3302 21 1 1.2917 -0.6099 -6.4478 22 1 -0.6683 -0.1119 -5.1090 23 1 -0.3634 0.5224 0.8850 24 1 -0.3633 0.5053 -0.8949 25 1 -0.3634 -1.0275 0.0100 26 1 3.0878 1.4620 0.2768 27 1 1.9123 1.8718 -0.9955 28 1 1.4597 2.0296 0.7187 29 1 0.5630 1.3428 2.6200 30 1 2.3925 -0.0376 4.5430 31 1 3.2456 -2.3504 4.5016 32 1 3.3192 -3.5904 2.3835 33 1 3.6273 -2.8173 -0.3935 34 1 2.2696 -3.8217 0.1611 35 1 1.9001 -2.6997 -2.0825 36 1 0.6575 -2.3265 -0.8606 37 1 2.7403 -1.9359 -4.7427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260650333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:28 Heat of formation + Delta-G solvation = -32.386614 kcal Electronic energy + Delta-G solvation = -18733.028890 eV Core-core repulsion = 16053.651882 eV Total energy + Delta-G solvation = -2679.377009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21565 -36.95199 -36.22265 -32.58453 -32.28425 -29.39941 -28.78153 -26.35582 -26.10887 -24.04749 -22.06586 -21.56705 -20.35240 -17.88529 -17.48273 -16.08883 -15.59062 -15.29751 -14.66946 -14.42373 -13.73211 -13.35824 -13.11592 -12.86109 -12.56425 -12.46344 -11.97066 -11.79944 -11.32466 -11.08789 -10.86833 -10.80609 -10.67981 -10.48298 -10.45053 -10.25859 -10.01140 -9.76663 -9.41432 -8.67322 -8.59093 -8.27364 -8.08124 -7.99089 -5.95186 -3.99593 1.66671 1.81958 3.33253 3.38333 3.40697 4.04538 4.45961 4.62510 5.25287 5.29035 5.34927 5.43596 5.71872 5.84649 5.97898 6.03144 6.10048 6.22982 6.30301 6.35306 6.49975 6.65191 6.71589 6.73497 6.78765 6.79996 6.84749 7.09817 7.15025 7.19772 7.25168 7.30181 7.34915 7.59719 7.78191 8.03895 8.05093 8.13888 8.50108 9.02444 9.63713 11.11034 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.008025 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.639939 B = 3488.427319 C = 4091.350641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.017 4.017 3 C -0.129 4.129 4 C -0.071 4.071 5 C 0.101 3.899 6 O -0.489 6.489 7 C -0.162 4.162 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.052 4.052 11 C -0.083 4.083 12 C -0.115 4.115 13 C 0.064 3.936 14 H 0.027 0.973 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.378 0.622 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -0.183 11.434 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.017 4.017 3 C -0.186 4.186 4 C -0.072 4.072 5 C 0.056 3.944 6 O -0.299 6.299 7 C -0.181 4.181 8 C -0.138 4.138 9 C -0.156 4.156 10 C -0.052 4.052 11 C -0.120 4.120 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.045 0.955 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.204 1.204 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.234 0.766 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.308 -0.140 11.183 11.260 hybrid contribution -0.776 0.135 -0.613 0.997 sum -2.084 -0.005 10.570 10.774 Atomic orbital electron populations 1.21812 0.94980 1.00941 1.00188 1.19495 0.94841 0.95008 0.92399 1.21993 0.99797 0.95440 1.01406 1.20357 0.98299 0.93149 0.95393 1.18541 0.99569 0.84209 0.92038 1.84945 1.27755 1.23178 1.94048 1.21202 1.03800 0.95642 0.97438 1.20764 1.01005 0.94366 0.97702 1.21184 1.01888 1.00057 0.92497 1.19875 0.96064 0.93710 0.95526 1.20634 1.01734 0.96769 0.92852 1.21716 0.95933 0.99757 0.97833 1.18663 0.96400 0.90621 0.89796 0.95498 1.21189 1.23395 1.18881 0.90693 0.92194 1.24952 0.95189 0.95157 0.98758 1.69878 1.33106 1.27001 1.23033 0.86750 0.79881 0.79274 0.82625 1.20392 1.21457 1.20394 0.95672 0.91028 0.93356 0.94573 0.92264 0.92005 0.76626 0.86417 0.86568 0.86618 0.91169 0.92622 0.88627 0.94453 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.71 37.16 0.29 -2.02 16 2 C -0.02 -0.36 0.32 -155.84 -0.05 -0.41 16 3 C -0.13 -2.60 7.42 37.16 0.28 -2.32 16 4 C -0.07 -1.37 4.65 -104.47 -0.49 -1.86 16 5 C 0.10 1.71 6.30 -39.08 -0.25 1.46 16 6 O -0.49 -7.47 9.34 -19.43 -0.18 -7.65 16 7 C -0.16 -2.45 9.98 -39.53 -0.39 -2.84 16 8 C -0.12 -1.74 10.04 -39.71 -0.40 -2.14 16 9 C -0.14 -2.21 9.60 -39.42 -0.38 -2.59 16 10 C -0.05 -0.97 5.74 -104.63 -0.60 -1.57 16 11 C -0.08 -1.63 5.67 -28.05 -0.16 -1.79 16 12 C -0.11 -2.63 5.10 -26.70 -0.14 -2.76 16 13 C 0.06 1.54 1.33 -91.74 -0.12 1.41 16 14 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 15 C -0.50 -13.14 6.92 -34.44 -0.24 -13.38 16 16 H 0.06 1.53 5.78 -52.48 -0.30 1.23 16 17 C 0.06 1.62 5.28 -17.82 -0.09 1.52 16 18 N -0.89 -24.88 11.40 55.43 0.63 -24.25 16 19 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.02 0.39 6.84 -51.93 -0.36 0.04 16 24 H 0.07 1.43 6.03 -51.93 -0.31 1.12 16 25 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 26 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 27 H 0.06 1.26 6.96 -51.93 -0.36 0.90 16 28 H 0.06 1.10 5.60 -51.93 -0.29 0.81 16 29 H 0.38 4.25 8.18 45.56 0.37 4.63 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.10 2.46 6.02 -51.93 -0.31 2.14 16 36 H 0.04 0.84 6.28 -51.93 -0.33 0.51 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -28.36 280.70 -7.39 -35.76 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.31 Total: 5.31 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.74 Total: -29.28 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.18 Total: -7.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.36 -7.39 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.370 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds