Wall clock time and date at job start Mon Mar 30 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.22019 * 2 1 4 4 C 1.50620 * 109.25246 * 119.44719 * 2 1 3 5 5 C 1.39393 * 117.76348 * 282.59515 * 4 2 1 6 6 O 1.35902 * 119.78588 * 359.75424 * 5 4 2 7 7 C 1.38440 * 120.42855 * 179.77017 * 5 4 2 8 8 C 1.38169 * 119.70998 * 359.96358 * 7 5 4 9 9 C 1.37957 * 119.83249 * 0.10573 * 8 7 5 10 10 C 1.37578 * 122.58715 * 102.53061 * 4 2 1 11 11 C 1.50634 * 122.55875 * 0.72872 * 10 4 2 12 12 C 1.52731 * 110.59042 * 342.20272 * 11 10 4 13 13 C 1.52740 * 109.24945 * 240.55763 * 2 1 3 14 14 H 1.09000 * 109.68340 * 171.05711 * 13 2 1 15 15 C 1.50702 * 109.68322 * 50.49786 * 13 2 1 16 16 H 1.08003 * 119.99736 * 0.02562 * 15 13 2 17 17 C 1.37868 * 119.99767 * 180.02562 * 15 13 2 18 18 N 1.31518 * 120.00391 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99971 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47144 * 59.99491 * 19 17 15 21 21 H 1.48496 * 109.47464 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47123 * 300.00050 * 19 17 15 23 23 H 1.08999 * 109.47275 * 300.55331 * 1 2 3 24 24 H 1.09004 * 109.47039 * 60.54993 * 1 2 3 25 25 H 1.08995 * 109.47660 * 180.55487 * 1 2 3 26 26 H 1.09000 * 109.46920 * 164.37724 * 3 2 1 27 27 H 1.08999 * 109.47127 * 284.37824 * 3 2 1 28 28 H 1.09001 * 109.47139 * 44.37749 * 3 2 1 29 29 H 0.96694 * 114.00384 * 89.99528 * 6 5 4 30 30 H 1.07995 * 120.14241 * 179.97438 * 7 5 4 31 31 H 1.08004 * 120.08309 * 180.13166 * 8 7 5 32 32 H 1.07996 * 119.66920 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.25525 * 102.48275 * 11 10 4 34 34 H 1.08997 * 109.25441 * 221.95235 * 11 10 4 35 35 H 1.09004 * 109.68163 * 170.84085 * 12 11 10 36 36 H 1.09001 * 109.68287 * 291.35071 * 12 11 10 37 37 H 0.97002 * 119.99745 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4447 0.0000 4 6 2.0266 -0.6991 1.2383 5 6 1.9868 0.0042 2.4411 6 8 1.5149 1.2785 2.4628 7 6 2.4251 -0.5869 3.6137 8 6 2.9041 -1.8826 3.5900 9 6 2.9446 -2.5776 2.3990 10 6 2.5084 -1.9876 1.2189 11 6 2.5944 -2.8020 -0.0454 12 6 1.7056 -2.2015 -1.1327 13 6 2.0335 -0.7088 -1.2558 14 1 3.1117 -0.5760 -1.3450 15 6 1.3487 -0.1372 -2.4704 16 1 0.6241 0.6559 -2.3586 17 6 1.6472 -0.6266 -3.7243 18 7 2.5300 -1.5919 -3.8604 19 14 0.7990 0.0825 -5.2300 20 1 1.0994 1.5333 -5.3302 21 1 1.2917 -0.6099 -6.4478 22 1 -0.6683 -0.1119 -5.1090 23 1 -0.3634 0.5224 0.8850 24 1 -0.3633 0.5053 -0.8949 25 1 -0.3634 -1.0275 0.0100 26 1 3.0878 1.4620 0.2768 27 1 1.9123 1.8718 -0.9955 28 1 1.4597 2.0296 0.7187 29 1 0.5630 1.3428 2.6200 30 1 2.3925 -0.0376 4.5430 31 1 3.2456 -2.3504 4.5016 32 1 3.3192 -3.5904 2.3835 33 1 3.6273 -2.8173 -0.3935 34 1 2.2696 -3.8217 0.1611 35 1 1.9001 -2.6997 -2.0825 36 1 0.6575 -2.3265 -0.8606 37 1 2.7403 -1.9359 -4.7427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260650333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:28 Heat of formation + Delta-G solvation = -48.468231 kcal Electronic energy + Delta-G solvation = -18733.726242 eV Core-core repulsion = 16053.651882 eV Total energy + Delta-G solvation = -2680.074360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60231 -38.39047 -37.56349 -34.49646 -33.83270 -30.98331 -30.08178 -28.00794 -27.84079 -25.77021 -23.47648 -23.10389 -21.85293 -19.52784 -18.71915 -18.07348 -17.04990 -16.55627 -16.23299 -16.02498 -15.29080 -14.86045 -14.65884 -14.47296 -14.13454 -14.04842 -13.55049 -13.18055 -12.95715 -12.73732 -12.63426 -12.36304 -12.30017 -12.07392 -12.05798 -11.97187 -11.66579 -11.48767 -11.22024 -10.48259 -10.37847 -10.19547 -9.38588 -9.28979 -8.01917 -6.12434 0.43983 0.55160 1.43115 1.43763 1.50630 2.46825 2.81711 3.25536 3.43676 3.95465 3.99674 4.22395 4.32739 4.35768 4.50315 4.62358 4.66651 4.73015 4.83251 4.87435 5.00219 5.09599 5.12505 5.20684 5.27559 5.35529 5.49042 5.49948 5.56085 5.61212 5.61528 5.66560 5.76562 5.96897 6.06924 6.11245 6.21608 6.48897 6.96118 6.99232 7.53566 9.03079 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.008025 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.639939 B = 3488.427319 C = 4091.350641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.015 4.015 3 C -0.120 4.120 4 C -0.101 4.101 5 C 0.099 3.901 6 O -0.495 6.495 7 C -0.157 4.157 8 C -0.109 4.109 9 C -0.140 4.140 10 C -0.077 4.077 11 C -0.076 4.076 12 C -0.108 4.108 13 C 0.064 3.936 14 H -0.021 1.021 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.920 5.920 19 Si 0.946 3.054 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.270 1.270 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.019 0.981 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 0.154 14.125 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.015 4.015 3 C -0.177 4.177 4 C -0.102 4.102 5 C 0.055 3.945 6 O -0.308 6.308 7 C -0.175 4.175 8 C -0.126 4.126 9 C -0.158 4.158 10 C -0.077 4.077 11 C -0.113 4.113 12 C -0.146 4.146 13 C 0.046 3.954 14 H -0.002 1.002 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.772 3.228 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.195 1.195 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.256 0.744 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.173 0.208 13.882 14.053 hybrid contribution -0.486 0.049 -1.377 1.461 sum -2.659 0.257 12.505 12.788 Atomic orbital electron populations 1.21724 0.93754 1.00720 1.01083 1.19331 0.95837 0.94712 0.91584 1.21927 0.99255 0.95769 1.00755 1.20306 1.00468 0.93844 0.95579 1.18558 0.99732 0.84440 0.91810 1.84868 1.29516 1.22386 1.94033 1.21550 1.02288 0.95978 0.97725 1.21207 0.99049 0.94000 0.98387 1.21403 1.01300 1.01151 0.91966 1.19856 0.98097 0.93919 0.95858 1.20474 0.99901 0.98114 0.92781 1.21503 0.96626 0.98920 0.97518 1.18555 0.93326 0.92037 0.91513 1.00245 1.21548 1.23108 1.18601 0.91698 0.91986 1.25702 0.95980 0.95636 1.01570 1.70036 1.34499 1.28242 1.23281 0.85799 0.79183 0.78510 0.79279 1.20027 1.21500 1.19500 0.92054 0.92669 0.94155 0.96138 0.94517 0.89238 0.74395 0.83476 0.82714 0.84544 0.92871 0.90488 0.92029 0.94379 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 7.71 71.98 0.56 -3.74 16 2 C -0.01 -0.60 0.32 -53.04 -0.02 -0.62 16 3 C -0.12 -4.84 7.42 71.98 0.53 -4.31 16 4 C -0.10 -3.80 4.65 -19.77 -0.09 -3.89 16 5 C 0.10 3.07 6.30 22.60 0.14 3.22 16 6 O -0.50 -13.51 9.34 -92.44 -0.86 -14.37 16 7 C -0.16 -4.05 9.98 22.30 0.22 -3.83 16 8 C -0.11 -2.65 10.04 22.19 0.22 -2.43 16 9 C -0.14 -4.08 9.60 22.38 0.21 -3.87 16 10 C -0.08 -2.84 5.74 -19.87 -0.11 -2.95 16 11 C -0.08 -3.05 5.67 29.74 0.17 -2.88 16 12 C -0.11 -5.16 5.10 30.61 0.16 -5.00 16 13 C 0.06 3.24 1.33 -11.52 -0.02 3.23 16 14 H -0.02 -1.22 8.08 -2.39 -0.02 -1.24 16 15 C -0.51 -27.69 6.92 25.60 0.18 -27.52 16 16 H 0.06 3.26 5.78 -2.91 -0.02 3.24 16 17 C 0.01 0.48 5.28 84.65 0.45 0.93 16 18 N -0.92 -53.78 11.40 21.44 0.24 -53.54 16 19 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H 0.06 1.78 6.84 -2.39 -0.02 1.76 16 24 H 0.05 2.19 6.03 -2.38 -0.01 2.17 16 25 H 0.04 1.53 6.47 -2.39 -0.02 1.51 16 26 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 27 H 0.04 1.59 6.96 -2.39 -0.02 1.58 16 28 H 0.09 3.04 5.60 -2.39 -0.01 3.03 16 29 H 0.40 7.35 8.18 -74.06 -0.61 6.74 16 30 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.14 3.32 8.05 -2.91 -0.02 3.29 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 35 H 0.06 3.35 6.02 -2.39 -0.01 3.33 16 36 H 0.04 1.76 6.28 -2.39 -0.01 1.75 16 37 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -63.85 280.70 4.48 -59.37 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.47 Total: 16.26 kcal Atomic # 6 Polarization: -56.25 SS G_CDS: 2.60 Total: -53.65 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.24 Total: -53.54 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.86 Total: -14.37 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.85 4.48 -59.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260650333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.900 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds