Wall clock time and date at job start Mon Mar 30 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38271 * 120.11427 * 2 1 4 4 C 1.37931 * 119.77504 * 179.87997 * 3 2 1 5 5 C 1.38918 * 120.54303 * 0.02562 * 4 3 2 6 6 C 1.37666 * 119.68041 * 0.23554 * 5 4 3 7 7 C 1.37934 * 120.11683 * 179.72019 * 2 1 3 8 8 C 1.50627 * 122.56120 * 179.53066 * 6 5 4 9 9 O 1.42901 * 109.25570 * 257.63968 * 8 6 5 10 10 C 1.50700 * 109.25425 * 138.20392 * 8 6 5 11 11 H 1.08003 * 119.99717 * 120.24880 * 10 8 6 12 12 C 1.37875 * 120.00382 * 300.24791 * 10 8 6 13 13 N 1.31516 * 119.99739 * 6.43234 * 12 10 8 14 14 Si 1.86800 * 119.99923 * 186.43618 * 12 10 8 15 15 H 1.48495 * 109.47465 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47164 * 119.99860 * 14 12 10 17 17 H 1.48504 * 109.47063 * 239.99358 * 14 12 10 18 18 C 1.52735 * 110.57720 * 17.92744 * 8 6 5 19 19 H 1.08998 * 109.68912 * 68.55295 * 18 8 6 20 20 C 1.53001 * 109.68271 * 189.07486 * 18 8 6 21 21 C 1.53332 * 108.37771 * 308.83246 * 18 8 6 22 22 C 1.50629 * 117.75288 * 180.61153 * 5 4 3 23 23 H 1.08996 * 109.46756 * 90.00185 * 1 2 3 24 24 H 1.09002 * 109.47364 * 330.00030 * 1 2 3 25 25 H 1.08998 * 109.47178 * 210.00018 * 1 2 3 26 26 H 1.08004 * 120.11129 * 359.85375 * 3 2 1 27 27 H 1.07996 * 119.72573 * 179.97438 * 4 3 2 28 28 H 1.08003 * 119.72554 * 0.02562 * 7 2 1 29 29 H 0.96700 * 114.00107 * 300.00087 * 9 8 6 30 30 H 0.97000 * 119.99495 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47158 * 59.99389 * 20 18 8 32 32 H 1.09000 * 109.47166 * 179.97438 * 20 18 8 33 33 H 1.08997 * 109.47083 * 299.99241 * 20 18 8 34 34 H 1.08994 * 109.67719 * 189.58111 * 21 18 8 35 35 H 1.09001 * 109.67759 * 310.08076 * 21 18 8 36 36 H 1.09001 * 109.25037 * 317.70812 * 22 5 4 37 37 H 1.08999 * 109.25085 * 77.14103 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1961 0.0000 4 6 3.5800 1.1879 0.0025 5 6 4.2789 -0.0127 0.0045 6 6 3.5882 -1.2035 -0.0009 7 6 2.1991 -1.1931 0.0058 8 6 4.2796 -2.5417 -0.0096 9 8 4.2371 -3.0856 -1.3304 10 6 3.5670 -3.4753 0.9346 11 1 3.1391 -4.3951 0.5640 12 6 3.4613 -3.1554 2.2716 13 7 3.8688 -1.9809 2.7008 14 14 2.7393 -4.3900 3.4732 15 1 2.3590 -5.6264 2.7439 16 1 3.7486 -4.7182 4.5119 17 1 1.5360 -3.8068 4.1190 18 6 5.7354 -2.3966 0.4289 19 1 5.7761 -2.1322 1.4855 20 6 6.4768 -3.7150 0.1986 21 6 6.3835 -1.2861 -0.4065 22 6 5.7837 0.0517 0.0214 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.6644 2.1335 -0.0024 27 1 4.1211 2.1226 0.0021 28 1 1.6565 -2.1270 0.0100 29 1 3.3424 -3.2223 -1.6709 30 1 3.7947 -1.7560 3.6415 31 1 6.4420 -3.9713 -0.8602 32 1 7.5152 -3.6075 0.5122 33 1 6.0016 -4.5053 0.7796 34 1 7.4597 -1.2778 -0.2342 35 1 6.1825 -1.4575 -1.4640 36 1 6.1178 0.8309 -0.6637 37 1 6.1219 0.2911 1.0296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:11 Heat of formation + Delta-G solvation = -61.591989 kcal Electronic energy + Delta-G solvation = -18955.930543 eV Core-core repulsion = 16275.287095 eV Total energy + Delta-G solvation = -2680.643449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98842 -38.20481 -35.88538 -34.62140 -33.28029 -31.58354 -30.77423 -28.03242 -27.01908 -25.82861 -23.15371 -22.43826 -21.84462 -19.89659 -18.77729 -17.17052 -16.73473 -16.30487 -16.00977 -15.44075 -15.07804 -14.78995 -14.56105 -14.12721 -14.05690 -13.79335 -13.73185 -13.16601 -12.89253 -12.84124 -12.78008 -12.59085 -12.32893 -12.21153 -12.08375 -11.87166 -11.62585 -11.34218 -11.27005 -10.79585 -10.31796 -10.11892 -9.22073 -8.93112 -8.01940 -6.18481 0.82596 0.93045 1.36186 1.41872 1.49283 2.42324 3.15720 3.23911 3.97914 4.15226 4.21262 4.29850 4.34231 4.40371 4.51212 4.65052 4.76347 4.83396 4.89522 4.91847 4.93788 5.03991 5.09923 5.13098 5.27232 5.28357 5.33862 5.47858 5.61571 5.61953 5.74820 5.76973 5.91373 5.95936 6.09145 6.25765 6.45153 6.56245 6.70786 7.28890 7.55435 8.94727 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.013295 C = 0.009261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.149788 B = 2105.581812 C = 3022.646522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.038 4.038 7 C -0.110 4.110 8 C 0.284 3.716 9 O -0.579 6.579 10 C -0.550 4.550 11 H 0.049 0.951 12 C 0.043 3.957 13 N -0.881 5.881 14 Si 0.932 3.068 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.072 4.072 19 H 0.072 0.928 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.067 4.067 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.366 0.634 30 H 0.257 0.743 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 4.954 -4.532 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.162 4.162 4 C -0.157 4.157 5 C -0.097 4.097 6 C -0.039 4.039 7 C -0.129 4.129 8 C 0.245 3.755 9 O -0.385 6.385 10 C -0.588 4.588 11 H 0.067 0.933 12 C -0.160 4.160 13 N -0.517 5.517 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.212 1.212 18 C -0.091 4.091 19 H 0.090 0.910 20 C -0.175 4.175 21 C -0.146 4.146 22 C -0.104 4.104 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.118 0.882 29 H 0.212 0.788 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.267 5.090 -4.278 6.655 hybrid contribution -1.097 -0.858 1.138 1.799 sum -1.364 4.233 -3.140 5.444 Atomic orbital electron populations 1.20685 0.90098 1.02393 1.02511 1.20098 0.97026 0.93243 1.01623 1.20971 0.94132 0.97515 1.03604 1.21238 0.94740 0.97299 1.02375 1.19813 0.96084 0.92960 1.00851 1.20472 0.93790 0.95872 0.93717 1.20988 0.94403 0.96899 1.00566 1.17681 0.92481 0.86409 0.78946 1.86332 1.32376 1.86347 1.33439 1.21750 1.37316 1.05812 0.93922 0.93277 1.25305 0.95483 0.95921 0.99245 1.70061 1.46582 1.20073 1.14999 0.85916 0.78129 0.80264 0.79781 1.19717 1.20896 1.21191 1.21011 0.93863 0.94403 0.99851 0.90975 1.21471 0.98076 0.97420 1.00560 1.21576 0.99109 0.94515 0.99398 1.20344 0.91125 0.98051 1.00909 0.90299 0.90771 0.92758 0.84758 0.85318 0.88189 0.78837 0.93334 0.93402 0.93245 0.94488 0.91320 0.92784 0.90088 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.99 10.02 71.24 0.71 -2.27 16 2 C -0.12 -4.60 5.87 -19.93 -0.12 -4.72 16 3 C -0.14 -5.18 9.71 22.20 0.22 -4.96 16 4 C -0.14 -5.22 9.61 22.36 0.21 -5.01 16 5 C -0.10 -4.14 5.74 -19.86 -0.11 -4.25 16 6 C -0.04 -1.75 3.61 -19.86 -0.07 -1.82 16 7 C -0.11 -4.93 8.51 22.36 0.19 -4.74 16 8 C 0.28 13.57 0.33 -12.40 0.00 13.56 16 9 O -0.58 -26.15 11.36 -148.98 -1.69 -27.84 16 10 C -0.55 -28.53 6.07 25.60 0.16 -28.38 16 11 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 12 C 0.04 2.24 4.92 84.65 0.42 2.65 16 13 N -0.88 -47.33 10.59 21.45 0.23 -47.10 16 14 Si 0.93 42.50 29.54 68.60 2.03 44.53 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 18 C -0.07 -3.30 1.89 -10.77 -0.02 -3.32 16 19 H 0.07 3.73 6.21 -2.39 -0.01 3.71 16 20 C -0.12 -4.98 8.81 71.98 0.63 -4.34 16 21 C -0.11 -4.24 5.27 30.61 0.16 -4.08 16 22 C -0.07 -2.56 5.67 29.73 0.17 -2.39 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 1.91 8.09 -2.39 -0.02 1.89 16 25 H 0.05 1.66 8.09 -2.39 -0.02 1.64 16 26 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 27 H 0.13 4.03 8.05 -2.91 -0.02 4.01 16 28 H 0.10 4.61 7.24 -2.91 -0.02 4.59 16 29 H 0.37 14.69 8.96 -74.06 -0.66 14.03 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.05 1.97 7.47 -2.39 -0.02 1.95 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 34 H 0.07 2.33 8.13 -2.39 -0.02 2.32 16 35 H 0.05 2.15 7.66 -2.39 -0.02 2.13 16 36 H 0.08 2.56 8.13 -2.39 -0.02 2.54 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -58.22 292.97 3.50 -54.72 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.39 Total: 29.77 kcal Atomic # 6 Polarization: -56.61 SS G_CDS: 2.54 Total: -54.07 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.23 Total: -47.10 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.69 Total: -27.84 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -58.22 3.50 -54.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds