Wall clock time and date at job start Mon Mar 30 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.11983 * 2 1 4 4 C 1.37929 * 119.77531 * 180.11374 * 3 2 1 5 5 C 1.38911 * 120.54375 * 359.94030 * 4 3 2 6 6 C 1.37662 * 119.68105 * 359.54342 * 5 4 3 7 7 C 1.37934 * 120.10950 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.55681 * 180.40245 * 6 5 4 9 9 O 1.42902 * 109.03559 * 102.79962 * 8 6 5 10 10 C 1.50706 * 109.39741 * 222.18200 * 8 6 5 11 11 H 1.07998 * 120.00219 * 27.22362 * 10 8 6 12 12 C 1.37878 * 119.99712 * 207.21352 * 10 8 6 13 13 N 1.31508 * 120.00068 * 176.77247 * 12 10 8 14 14 Si 1.86798 * 120.00022 * 356.77672 * 12 10 8 15 15 H 1.48509 * 109.47234 * 85.04096 * 14 12 10 16 16 H 1.48500 * 109.47056 * 205.03684 * 14 12 10 17 17 H 1.48493 * 109.47455 * 325.04209 * 14 12 10 18 18 C 1.52732 * 110.65518 * 342.60560 * 8 6 5 19 19 H 1.08998 * 109.68125 * 170.63916 * 18 8 6 20 20 C 1.52999 * 109.68131 * 291.18951 * 18 8 6 21 21 C 1.53321 * 108.38681 * 50.91271 * 18 8 6 22 22 C 1.50636 * 117.75247 * 179.63156 * 5 4 3 23 23 H 1.09004 * 109.47316 * 265.29046 * 1 2 3 24 24 H 1.09009 * 109.46782 * 25.28265 * 1 2 3 25 25 H 1.08998 * 109.47510 * 145.28467 * 1 2 3 26 26 H 1.08007 * 120.10742 * 0.09239 * 3 2 1 27 27 H 1.08000 * 119.72882 * 179.91291 * 4 3 2 28 28 H 1.07998 * 119.73393 * 0.04347 * 7 2 1 29 29 H 0.96699 * 114.00302 * 54.00420 * 9 8 6 30 30 H 0.96995 * 120.00727 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47152 * 178.92931 * 20 18 8 32 32 H 1.08996 * 109.47077 * 298.93252 * 20 18 8 33 33 H 1.09003 * 109.47165 * 58.92999 * 20 18 8 34 34 H 1.08997 * 109.68050 * 170.43180 * 21 18 8 35 35 H 1.09002 * 109.71259 * 49.90543 * 21 18 8 36 36 H 1.08996 * 109.25608 * 282.62329 * 22 5 4 37 37 H 1.08996 * 109.25012 * 42.05232 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1959 0.0000 4 6 3.5800 1.1876 -0.0024 5 6 4.2788 -0.0129 -0.0035 6 6 3.5880 -1.2037 0.0072 7 6 2.1989 -1.1932 0.0005 8 6 4.2795 -2.5419 0.0156 9 8 4.2309 -3.0834 1.3372 10 6 3.5710 -3.4773 -0.9300 11 1 3.0292 -3.0815 -1.7762 12 6 3.6148 -4.8385 -0.7150 13 7 2.9446 -5.6506 -1.5028 14 14 4.6261 -5.5292 0.6956 15 1 3.8196 -5.5027 1.9424 16 1 5.0147 -6.9288 0.3872 17 1 5.8477 -4.7051 0.8789 18 6 5.7373 -2.3978 -0.4164 19 1 6.2649 -3.3364 -0.2472 20 6 5.8011 -2.0303 -1.9002 21 6 6.3817 -1.2854 0.4192 22 6 5.7837 0.0513 -0.0147 23 1 -0.3634 -0.0844 1.0242 24 1 -0.3633 0.9293 -0.4389 25 1 -0.3634 -0.8447 -0.5852 26 1 1.6645 2.1334 0.0015 27 1 4.1212 2.1222 -0.0038 28 1 1.6564 -2.1270 0.0002 29 1 3.3398 -3.1335 1.7093 30 1 2.9751 -6.6082 -1.3514 31 1 6.8420 -1.9096 -2.2003 32 1 5.3422 -2.8230 -2.4909 33 1 5.2645 -1.0962 -2.0666 34 1 7.4586 -1.2774 0.2516 35 1 6.1761 -1.4536 1.4763 36 1 6.1259 0.2881 -1.0221 37 1 6.1151 0.8323 0.6696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:15 Heat of formation + Delta-G solvation = -41.440722 kcal Electronic energy + Delta-G solvation = -18876.146670 eV Core-core repulsion = 16196.377046 eV Total energy + Delta-G solvation = -2679.769624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95509 -37.00736 -34.96572 -32.43605 -31.86849 -30.62023 -29.25024 -26.42661 -25.95488 -24.39155 -22.29652 -20.97158 -20.81982 -17.65681 -17.08199 -15.94636 -15.19951 -15.08077 -14.74944 -14.35260 -13.79592 -13.57489 -13.23430 -12.83910 -12.72531 -12.31030 -11.85816 -11.84015 -11.77375 -11.59533 -11.35515 -11.13618 -10.85911 -10.67849 -10.59853 -10.25226 -10.10240 -9.74603 -9.66078 -8.92753 -8.46002 -8.30157 -8.09468 -7.83288 -6.09797 -4.19938 1.92296 2.01353 3.51047 3.58638 3.76440 4.30525 4.57633 5.15454 5.19238 5.26370 5.38421 5.51324 5.51921 5.58509 5.68983 5.81901 5.90409 6.01191 6.02956 6.13335 6.18677 6.23373 6.38897 6.40702 6.44738 6.61579 6.65731 6.72462 6.85008 6.98177 7.05295 7.12486 7.22546 7.33140 7.48710 7.63923 7.70095 8.23843 8.70084 8.91997 9.51919 10.98894 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.011125 C = 0.008648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.359164 B = 2516.307217 C = 3236.979394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.079 4.079 6 C -0.065 4.065 7 C -0.091 4.091 8 C 0.261 3.739 9 O -0.560 6.560 10 C -0.543 4.543 11 H 0.079 0.921 12 C 0.072 3.928 13 N -0.893 5.893 14 Si 0.946 3.054 15 H -0.296 1.296 16 H -0.331 1.331 17 H -0.266 1.266 18 C -0.076 4.076 19 H 0.075 0.925 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.076 4.076 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.366 0.634 30 H 0.264 0.736 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 11.152 3.507 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.149 4.149 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.066 4.066 7 C -0.109 4.109 8 C 0.223 3.777 9 O -0.368 6.368 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.132 4.132 13 N -0.529 5.529 14 Si 0.783 3.217 15 H -0.224 1.224 16 H -0.263 1.263 17 H -0.192 1.192 18 C -0.094 4.094 19 H 0.093 0.907 20 C -0.189 4.189 21 C -0.156 4.156 22 C -0.112 4.112 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.149 0.851 29 H 0.214 0.786 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.662 10.961 3.345 11.580 hybrid contribution -0.241 -0.316 0.667 0.776 sum 1.421 10.645 4.012 11.465 Atomic orbital electron populations 1.20712 0.91946 1.02137 1.01701 1.19825 0.95600 0.93473 1.01863 1.20762 0.94071 0.96938 1.03100 1.20983 0.94138 0.97042 1.03035 1.19661 0.95340 0.92561 1.00309 1.20579 0.93763 0.95736 0.96491 1.21308 0.94161 0.97561 0.97840 1.18143 0.92117 0.86717 0.80765 1.86160 1.33722 1.83403 1.33481 1.21265 1.33787 0.90740 1.12263 0.90340 1.25089 0.94523 0.96851 0.96733 1.69960 1.40714 1.03716 1.38509 0.85742 0.81502 0.73891 0.80529 1.22393 1.26336 1.19222 1.21264 0.95829 0.97661 0.94691 0.90688 1.21720 0.99102 1.02069 0.95971 1.21655 0.98487 0.94703 1.00730 1.20448 0.91508 0.98117 1.01174 0.91876 0.92394 0.91541 0.87210 0.87230 0.85073 0.78599 0.92652 0.94593 0.90835 0.93356 0.92845 0.91621 0.90993 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.02 36.00 0.36 -1.13 16 2 C -0.11 -1.83 5.87 -104.73 -0.61 -2.44 16 3 C -0.13 -2.06 9.69 -39.69 -0.38 -2.45 16 4 C -0.13 -2.17 9.61 -39.45 -0.38 -2.55 16 5 C -0.08 -1.43 5.01 -104.61 -0.52 -1.96 16 6 C -0.07 -1.34 4.55 -104.61 -0.48 -1.81 16 7 C -0.09 -1.79 8.48 -39.44 -0.33 -2.13 16 8 C 0.26 5.87 0.27 -93.09 -0.03 5.84 16 9 O -0.56 -12.56 7.69 -35.23 -0.27 -12.83 16 10 C -0.54 -14.22 5.80 -34.44 -0.20 -14.42 16 11 H 0.08 2.28 7.90 -52.49 -0.41 1.86 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 14 Si 0.95 23.72 24.34 -169.99 -4.14 19.58 16 15 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.33 -8.59 7.11 56.52 0.40 -8.19 16 17 H -0.27 -6.56 5.18 56.52 0.29 -6.27 16 18 C -0.08 -1.59 2.34 -90.59 -0.21 -1.81 16 19 H 0.07 1.72 5.68 -51.93 -0.29 1.42 16 20 C -0.13 -2.60 8.03 37.16 0.30 -2.31 16 21 C -0.12 -2.11 5.62 -26.70 -0.15 -2.26 16 22 C -0.08 -1.22 5.07 -28.05 -0.14 -1.37 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.69 8.06 -51.92 -0.42 0.27 16 25 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 27 H 0.11 1.49 8.05 -52.49 -0.42 1.07 16 28 H 0.13 2.75 7.26 -52.49 -0.38 2.37 16 29 H 0.37 7.49 8.70 45.56 0.40 7.88 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.63 7.04 -51.93 -0.37 1.27 16 33 H 0.05 0.93 5.59 -51.93 -0.29 0.64 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 36 H 0.07 1.10 6.82 -51.93 -0.35 0.75 16 37 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 LS Contribution 281.01 15.07 4.23 4.23 Total: -1.00 -29.50 281.01 -7.00 -36.50 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.72 Total: 7.06 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.88 Total: -28.89 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.65 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.27 Total: -12.83 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.14 Total: 19.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.50 -7.00 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.944 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds