Wall clock time and date at job start Mon Mar 30 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.11983 * 2 1 4 4 C 1.37929 * 119.77531 * 180.11374 * 3 2 1 5 5 C 1.38911 * 120.54375 * 359.94030 * 4 3 2 6 6 C 1.37662 * 119.68105 * 359.54342 * 5 4 3 7 7 C 1.37934 * 120.10950 * 179.97438 * 2 1 3 8 8 C 1.50635 * 122.55681 * 180.40245 * 6 5 4 9 9 O 1.42902 * 109.03559 * 102.79962 * 8 6 5 10 10 C 1.50706 * 109.39741 * 222.18200 * 8 6 5 11 11 H 1.07998 * 120.00219 * 27.22362 * 10 8 6 12 12 C 1.37878 * 119.99712 * 207.21352 * 10 8 6 13 13 N 1.31508 * 120.00068 * 176.77247 * 12 10 8 14 14 Si 1.86798 * 120.00022 * 356.77672 * 12 10 8 15 15 H 1.48509 * 109.47234 * 85.04096 * 14 12 10 16 16 H 1.48500 * 109.47056 * 205.03684 * 14 12 10 17 17 H 1.48493 * 109.47455 * 325.04209 * 14 12 10 18 18 C 1.52732 * 110.65518 * 342.60560 * 8 6 5 19 19 H 1.08998 * 109.68125 * 170.63916 * 18 8 6 20 20 C 1.52999 * 109.68131 * 291.18951 * 18 8 6 21 21 C 1.53321 * 108.38681 * 50.91271 * 18 8 6 22 22 C 1.50636 * 117.75247 * 179.63156 * 5 4 3 23 23 H 1.09004 * 109.47316 * 265.29046 * 1 2 3 24 24 H 1.09009 * 109.46782 * 25.28265 * 1 2 3 25 25 H 1.08998 * 109.47510 * 145.28467 * 1 2 3 26 26 H 1.08007 * 120.10742 * 0.09239 * 3 2 1 27 27 H 1.08000 * 119.72882 * 179.91291 * 4 3 2 28 28 H 1.07998 * 119.73393 * 0.04347 * 7 2 1 29 29 H 0.96699 * 114.00302 * 54.00420 * 9 8 6 30 30 H 0.96995 * 120.00727 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47152 * 178.92931 * 20 18 8 32 32 H 1.08996 * 109.47077 * 298.93252 * 20 18 8 33 33 H 1.09003 * 109.47165 * 58.92999 * 20 18 8 34 34 H 1.08997 * 109.68050 * 170.43180 * 21 18 8 35 35 H 1.09002 * 109.71259 * 49.90543 * 21 18 8 36 36 H 1.08996 * 109.25608 * 282.62329 * 22 5 4 37 37 H 1.08996 * 109.25012 * 42.05232 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1959 0.0000 4 6 3.5800 1.1876 -0.0024 5 6 4.2788 -0.0129 -0.0035 6 6 3.5880 -1.2037 0.0072 7 6 2.1989 -1.1932 0.0005 8 6 4.2795 -2.5419 0.0156 9 8 4.2309 -3.0834 1.3372 10 6 3.5710 -3.4773 -0.9300 11 1 3.0292 -3.0815 -1.7762 12 6 3.6148 -4.8385 -0.7150 13 7 2.9446 -5.6506 -1.5028 14 14 4.6261 -5.5292 0.6956 15 1 3.8196 -5.5027 1.9424 16 1 5.0147 -6.9288 0.3872 17 1 5.8477 -4.7051 0.8789 18 6 5.7373 -2.3978 -0.4164 19 1 6.2649 -3.3364 -0.2472 20 6 5.8011 -2.0303 -1.9002 21 6 6.3817 -1.2854 0.4192 22 6 5.7837 0.0513 -0.0147 23 1 -0.3634 -0.0844 1.0242 24 1 -0.3633 0.9293 -0.4389 25 1 -0.3634 -0.8447 -0.5852 26 1 1.6645 2.1334 0.0015 27 1 4.1212 2.1222 -0.0038 28 1 1.6564 -2.1270 0.0002 29 1 3.3398 -3.1335 1.7093 30 1 2.9751 -6.6082 -1.3514 31 1 6.8420 -1.9096 -2.2003 32 1 5.3422 -2.8230 -2.4909 33 1 5.2645 -1.0962 -2.0666 34 1 7.4586 -1.2774 0.2516 35 1 6.1761 -1.4536 1.4763 36 1 6.1259 0.2881 -1.0221 37 1 6.1151 0.8323 0.6696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:15 Heat of formation + Delta-G solvation = -60.075078 kcal Electronic energy + Delta-G solvation = -18876.954717 eV Core-core repulsion = 16196.377046 eV Total energy + Delta-G solvation = -2680.577670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.44474 -38.52177 -36.54178 -34.45127 -33.36676 -32.11524 -30.65067 -28.11951 -27.41066 -26.08272 -23.70904 -22.48325 -22.32652 -19.20997 -19.04946 -17.54149 -17.04440 -16.50747 -16.38564 -15.82384 -15.35084 -14.98317 -14.69032 -14.53023 -14.18163 -13.77141 -13.70741 -13.37263 -13.17398 -13.10199 -12.72303 -12.61659 -12.58716 -12.33879 -12.22469 -11.82695 -11.67436 -11.41578 -11.30067 -10.91922 -10.42882 -10.12657 -9.51366 -9.15791 -8.28991 -6.38126 0.57688 0.63523 1.45666 1.50043 1.72122 2.46406 2.92115 3.07259 3.64051 3.89170 4.02326 4.17186 4.24862 4.26270 4.30837 4.51099 4.59720 4.66784 4.74659 4.82848 4.85192 4.93237 4.98771 5.04775 5.06502 5.13128 5.24483 5.32217 5.38990 5.45101 5.51180 5.57785 5.72203 5.76236 5.86955 6.05656 6.12477 6.31924 6.65897 6.93753 7.36823 8.84007 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.011125 C = 0.008648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.359164 B = 2516.307217 C = 3236.979394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.089 4.089 6 C -0.093 4.093 7 C -0.118 4.118 8 C 0.261 3.739 9 O -0.564 6.564 10 C -0.521 4.521 11 H 0.037 0.963 12 C 0.022 3.978 13 N -0.942 5.942 14 Si 1.000 3.000 15 H -0.289 1.289 16 H -0.344 1.344 17 H -0.257 1.257 18 C -0.083 4.083 19 H 0.051 0.949 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.073 4.073 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.099 0.901 29 H 0.372 0.628 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 14.782 4.656 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.093 4.093 7 C -0.137 4.137 8 C 0.222 3.778 9 O -0.372 6.372 10 C -0.559 4.559 11 H 0.055 0.945 12 C -0.177 4.177 13 N -0.581 5.581 14 Si 0.836 3.164 15 H -0.217 1.217 16 H -0.277 1.277 17 H -0.183 1.183 18 C -0.102 4.102 19 H 0.070 0.930 20 C -0.180 4.180 21 C -0.149 4.149 22 C -0.109 4.109 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.117 0.883 29 H 0.220 0.780 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.847 14.615 4.506 15.556 hybrid contribution -0.694 -1.340 0.260 1.531 sum 2.153 13.275 4.766 14.268 Atomic orbital electron populations 1.20755 0.89957 1.02991 1.02633 1.20150 0.97236 0.92992 1.00807 1.21209 0.94368 0.97632 1.01053 1.21398 0.94515 0.97591 1.01079 1.19940 0.96765 0.92267 0.99979 1.20383 0.93987 0.95565 0.99377 1.21189 0.94349 0.97711 1.00423 1.18084 0.93076 0.87162 0.79472 1.86097 1.34272 1.83506 1.33351 1.21415 1.32065 0.91185 1.11236 0.94520 1.25756 0.95664 0.97432 0.98802 1.70082 1.43336 1.03855 1.40871 0.84848 0.80648 0.72544 0.78318 1.21651 1.27722 1.18331 1.21264 0.94592 0.98302 0.96017 0.93026 1.21617 1.00821 1.00783 0.94756 1.21589 0.99888 0.94185 0.99231 1.20509 0.89850 0.97814 1.02758 0.90491 0.89736 0.92844 0.83510 0.83501 0.88292 0.78009 0.92889 0.91373 0.94630 0.92804 0.90159 0.92639 0.89609 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 10.02 71.23 0.71 -2.04 16 2 C -0.11 -3.62 5.87 -19.93 -0.12 -3.74 16 3 C -0.12 -3.43 9.69 22.20 0.22 -3.21 16 4 C -0.13 -3.56 9.61 22.36 0.21 -3.35 16 5 C -0.09 -2.99 5.01 -19.86 -0.10 -3.09 16 6 C -0.09 -3.77 4.55 -19.86 -0.09 -3.86 16 7 C -0.12 -4.77 8.48 22.36 0.19 -4.58 16 8 C 0.26 11.87 0.27 -12.39 0.00 11.87 16 9 O -0.56 -25.42 7.69 -148.98 -1.15 -26.56 16 10 C -0.52 -28.72 5.80 25.60 0.15 -28.58 16 11 H 0.04 2.29 7.90 -2.91 -0.02 2.26 16 12 C 0.02 1.26 5.47 84.66 0.46 1.72 16 13 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 14 Si 1.00 50.53 24.34 68.60 1.67 52.20 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 16 H -0.34 -17.95 7.11 99.48 0.71 -17.24 16 17 H -0.26 -12.54 5.18 99.48 0.52 -12.02 16 18 C -0.08 -3.43 2.34 -10.78 -0.03 -3.45 16 19 H 0.05 2.34 5.68 -2.39 -0.01 2.33 16 20 C -0.12 -4.78 8.03 71.98 0.58 -4.20 16 21 C -0.11 -3.63 5.62 30.61 0.17 -3.46 16 22 C -0.07 -2.04 5.07 29.74 0.15 -1.89 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.08 1.72 8.06 -2.38 -0.02 1.70 16 25 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 26 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 27 H 0.15 3.01 8.05 -2.91 -0.02 2.99 16 28 H 0.10 4.48 7.26 -2.91 -0.02 4.46 16 29 H 0.37 15.56 8.70 -74.06 -0.64 14.91 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.62 7.04 -2.39 -0.02 1.60 16 33 H 0.05 2.01 5.59 -2.39 -0.01 2.00 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.92 7.66 -2.39 -0.02 1.91 16 36 H 0.09 2.21 6.82 -2.39 -0.02 2.19 16 37 H 0.09 2.06 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -67.25 281.01 3.56 -63.69 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.23 Total: 21.15 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 2.51 Total: -51.87 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.15 Total: -26.56 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.67 Total: 52.20 kcal Total: -67.25 3.56 -63.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.618 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds