Wall clock time and date at job start Mon Mar 30 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47184 * 2 1 4 4 C 1.34729 * 125.75906 * 90.00077 * 3 2 1 5 5 C 1.40721 * 106.59817 * 179.97438 * 4 3 2 6 6 C 1.34713 * 107.32991 * 0.20210 * 5 4 3 7 7 O 1.34149 * 108.09445 * 359.69783 * 6 5 4 8 8 C 1.50869 * 125.06177 * 179.39329 * 6 5 4 9 9 C 1.53282 * 109.22029 * 18.55186 * 8 6 5 10 10 C 1.53109 * 109.23208 * 313.03442 * 9 8 6 11 11 C 1.52721 * 117.90529 * 209.77475 * 10 9 8 12 12 C 1.52723 * 117.88735 * 278.85930 * 10 9 8 13 13 C 1.50855 * 127.79532 * 180.19893 * 5 4 3 14 14 H 1.08998 * 109.82910 * 311.92450 * 13 5 4 15 15 C 1.50706 * 109.82324 * 72.79809 * 13 5 4 16 16 H 1.07999 * 119.99515 * 120.00389 * 15 13 5 17 17 C 1.37870 * 120.00176 * 299.99856 * 15 13 5 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46977 * 299.99906 * 1 2 3 25 25 H 1.09004 * 109.47069 * 59.99611 * 1 2 3 26 26 H 1.09002 * 109.47112 * 240.00511 * 2 1 3 27 27 H 1.08998 * 109.47447 * 120.00418 * 2 1 3 28 28 H 1.07998 * 126.70107 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.50955 * 138.47134 * 8 6 5 30 30 H 1.08998 * 109.50949 * 258.62531 * 8 6 5 31 31 H 1.08994 * 109.51340 * 72.94217 * 9 8 6 32 32 H 1.09005 * 109.50907 * 193.04030 * 9 8 6 33 33 H 1.08996 * 117.50853 * 215.30638 * 11 10 9 34 34 H 1.09002 * 117.49999 * 0.36912 * 11 10 9 35 35 H 1.09003 * 117.50435 * 359.59688 * 12 10 9 36 36 H 1.08993 * 117.50813 * 144.66763 * 12 10 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2948 2.1631 1.0933 5 6 2.7385 3.4161 0.6314 6 6 2.7201 3.3769 -0.7150 7 8 2.2943 2.1616 -1.0907 8 6 3.1091 4.5192 -1.6207 9 6 3.9458 5.5295 -0.8277 10 6 3.2585 5.8135 0.5106 11 6 3.4575 7.1916 1.1380 12 6 2.1067 6.8164 0.5235 13 6 3.1641 4.6069 1.4540 14 1 2.4262 4.8015 2.2322 15 6 4.5090 4.3411 2.0800 16 1 5.3458 4.9861 1.8560 17 6 4.6711 3.2747 2.9387 18 7 3.6521 2.4890 3.2111 19 14 6.3379 2.9458 3.7152 20 1 7.3109 3.9663 3.2497 21 1 6.2174 3.0142 5.1938 22 1 6.8105 1.5948 3.3191 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.1860 1.8564 2.1231 29 1 3.6953 4.1375 -2.4567 30 1 2.2103 5.0070 -1.9978 31 1 4.9385 5.1175 -0.6466 32 1 4.0340 6.4551 -1.3965 33 1 3.5183 7.2458 2.2250 34 1 4.0759 7.9069 0.5959 35 1 1.8368 7.2851 -0.4229 36 1 1.2792 6.6239 1.2061 37 1 3.7661 1.7390 3.8156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:28 Heat of formation + Delta-G solvation = 25.191176 kcal Electronic energy + Delta-G solvation = -18478.785903 eV Core-core repulsion = 15801.905654 eV Total energy + Delta-G solvation = -2676.880248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37764 -37.96813 -33.60691 -33.45537 -32.28452 -30.77331 -28.23220 -26.61087 -24.06337 -23.21547 -21.77311 -21.31618 -19.92512 -19.22463 -17.12996 -15.96385 -15.60605 -15.15053 -14.78048 -14.17942 -13.93360 -13.71262 -13.17619 -12.82242 -12.40281 -12.16470 -11.90159 -11.66132 -11.51063 -11.22463 -11.11995 -10.91684 -10.82197 -10.75256 -10.68970 -10.45367 -10.12773 -9.83246 -9.42943 -9.03497 -8.67212 -8.43302 -7.89113 -6.85560 -5.94254 -4.05977 2.93341 3.29071 3.36848 3.40363 4.00038 4.19308 4.40623 4.66751 5.28953 5.34017 5.47759 5.55337 5.58487 5.68771 5.74747 5.80696 5.99144 6.03502 6.13927 6.23758 6.24389 6.27797 6.31261 6.45493 6.53616 6.60336 6.63098 6.71761 6.87950 6.90426 7.07480 7.33925 7.57253 7.68012 7.82506 7.98058 8.20285 8.36248 8.55596 8.96629 9.58345 11.02981 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.011870 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.543281 B = 2358.286519 C = 3635.263206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.027 4.027 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.098 4.098 6 C -0.079 4.079 7 O -0.195 6.195 8 C -0.015 4.015 9 C -0.071 4.071 10 C -0.096 4.096 11 C -0.171 4.171 12 C -0.191 4.191 13 C 0.140 3.860 14 H 0.036 0.964 15 C -0.496 4.496 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.179 0.821 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 0.846 -5.852 6.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.154 4.154 5 C -0.100 4.100 6 C -0.128 4.128 7 O -0.095 6.095 8 C -0.052 4.052 9 C -0.108 4.108 10 C -0.096 4.096 11 C -0.208 4.208 12 C -0.228 4.228 13 C 0.122 3.878 14 H 0.054 0.946 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.519 5.519 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.196 0.804 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.622 0.606 -6.027 7.058 hybrid contribution 1.030 -0.329 0.559 1.217 sum -2.592 0.277 -5.468 6.058 Atomic orbital electron populations 1.21774 0.95321 1.00885 1.02294 1.19755 0.95218 0.89025 1.02411 1.22312 1.11228 0.95355 0.85052 1.22439 0.99670 0.93113 1.00166 1.20597 0.99267 0.98372 0.91744 1.21933 1.10238 0.85775 0.94807 1.83658 1.67903 1.22662 1.35308 1.19757 0.99081 0.90873 0.95486 1.20998 0.99160 0.96969 0.93678 1.21619 0.99003 0.92038 0.96932 1.22782 0.98812 0.98773 1.00419 1.22953 0.92494 1.05601 1.01715 1.17010 0.96503 0.84508 0.89813 0.94600 1.21066 0.95305 1.11948 1.25032 0.92133 1.24936 0.96563 0.95775 0.96560 1.69816 1.29728 1.17091 1.35255 0.86526 0.84389 0.78093 0.78942 1.19823 1.21073 1.21175 0.92838 0.92248 0.92929 0.91841 0.89929 0.80407 0.91791 0.91654 0.90697 0.92423 0.88888 0.90239 0.90233 0.89578 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.89 37.16 0.37 -1.75 16 2 C -0.03 -0.46 6.47 -27.88 -0.18 -0.64 16 3 C -0.09 -2.01 6.58 -35.55 -0.23 -2.24 16 4 C -0.13 -3.33 9.11 -39.89 -0.36 -3.70 16 5 C -0.10 -2.45 5.08 -104.86 -0.53 -2.99 16 6 C -0.08 -1.82 7.17 -35.47 -0.25 -2.07 16 7 O -0.20 -4.49 10.65 5.79 0.06 -4.43 16 8 C -0.01 -0.28 6.28 -27.65 -0.17 -0.45 16 9 C -0.07 -1.31 5.58 -26.53 -0.15 -1.46 16 10 C -0.10 -1.97 1.25 -154.50 -0.19 -2.16 16 11 C -0.17 -3.12 9.86 -26.84 -0.26 -3.39 16 12 C -0.19 -3.40 9.94 -26.84 -0.27 -3.67 16 13 C 0.14 3.48 2.27 -92.61 -0.21 3.27 16 14 H 0.04 0.98 8.03 -51.93 -0.42 0.56 16 15 C -0.50 -13.29 8.33 -34.44 -0.29 -13.58 16 16 H 0.06 1.62 7.75 -52.49 -0.41 1.21 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.88 -24.00 8.96 55.43 0.50 -23.51 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.18 4.62 5.66 -52.49 -0.30 4.32 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.50 8.06 -51.93 -0.42 1.08 16 32 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.57 8.13 -51.93 -0.42 1.14 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -28.68 299.07 -8.54 -37.22 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.75 Total: 3.28 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: -2.84 Total: -33.23 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.50 Total: -23.51 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: 0.06 Total: -4.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.68 -8.54 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.412 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds