Wall clock time and date at job start Mon Mar 30 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47184 * 2 1 4 4 C 1.34729 * 125.75906 * 90.00077 * 3 2 1 5 5 C 1.40721 * 106.59817 * 179.97438 * 4 3 2 6 6 C 1.34713 * 107.32991 * 0.20210 * 5 4 3 7 7 O 1.34149 * 108.09445 * 359.69783 * 6 5 4 8 8 C 1.50869 * 125.06177 * 179.39329 * 6 5 4 9 9 C 1.53282 * 109.22029 * 18.55186 * 8 6 5 10 10 C 1.53109 * 109.23208 * 313.03442 * 9 8 6 11 11 C 1.52721 * 117.90529 * 209.77475 * 10 9 8 12 12 C 1.52723 * 117.88735 * 278.85930 * 10 9 8 13 13 C 1.50855 * 127.79532 * 180.19893 * 5 4 3 14 14 H 1.08998 * 109.82910 * 311.92450 * 13 5 4 15 15 C 1.50706 * 109.82324 * 72.79809 * 13 5 4 16 16 H 1.07999 * 119.99515 * 120.00389 * 15 13 5 17 17 C 1.37870 * 120.00176 * 299.99856 * 15 13 5 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46977 * 299.99906 * 1 2 3 25 25 H 1.09004 * 109.47069 * 59.99611 * 1 2 3 26 26 H 1.09002 * 109.47112 * 240.00511 * 2 1 3 27 27 H 1.08998 * 109.47447 * 120.00418 * 2 1 3 28 28 H 1.07998 * 126.70107 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.50955 * 138.47134 * 8 6 5 30 30 H 1.08998 * 109.50949 * 258.62531 * 8 6 5 31 31 H 1.08994 * 109.51340 * 72.94217 * 9 8 6 32 32 H 1.09005 * 109.50907 * 193.04030 * 9 8 6 33 33 H 1.08996 * 117.50853 * 215.30638 * 11 10 9 34 34 H 1.09002 * 117.49999 * 0.36912 * 11 10 9 35 35 H 1.09003 * 117.50435 * 359.59688 * 12 10 9 36 36 H 1.08993 * 117.50813 * 144.66763 * 12 10 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2948 2.1631 1.0933 5 6 2.7385 3.4161 0.6314 6 6 2.7201 3.3769 -0.7150 7 8 2.2943 2.1616 -1.0907 8 6 3.1091 4.5192 -1.6207 9 6 3.9458 5.5295 -0.8277 10 6 3.2585 5.8135 0.5106 11 6 3.4575 7.1916 1.1380 12 6 2.1067 6.8164 0.5235 13 6 3.1641 4.6069 1.4540 14 1 2.4262 4.8015 2.2322 15 6 4.5090 4.3411 2.0800 16 1 5.3458 4.9861 1.8560 17 6 4.6711 3.2747 2.9387 18 7 3.6521 2.4890 3.2111 19 14 6.3379 2.9458 3.7152 20 1 7.3109 3.9663 3.2497 21 1 6.2174 3.0142 5.1938 22 1 6.8105 1.5948 3.3191 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.1860 1.8564 2.1231 29 1 3.6953 4.1375 -2.4567 30 1 2.2103 5.0070 -1.9978 31 1 4.9385 5.1175 -0.6466 32 1 4.0340 6.4551 -1.3965 33 1 3.5183 7.2458 2.2250 34 1 4.0759 7.9069 0.5959 35 1 1.8368 7.2851 -0.4229 36 1 1.2792 6.6239 1.2061 37 1 3.7661 1.7390 3.8156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260696379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:28 Heat of formation + Delta-G solvation = 11.501112 kcal Electronic energy + Delta-G solvation = -18479.379548 eV Core-core repulsion = 15801.905654 eV Total energy + Delta-G solvation = -2677.473894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.14827 -39.54382 -35.38673 -35.00503 -33.91482 -32.50783 -30.08498 -28.21668 -25.84110 -24.77153 -23.24169 -22.89646 -21.71030 -20.85057 -18.93644 -17.85845 -17.24932 -16.84881 -16.66122 -15.82282 -15.34964 -15.13265 -14.69764 -14.47048 -14.25522 -13.64082 -13.47008 -13.38750 -13.01280 -12.95189 -12.82645 -12.63248 -12.34130 -12.26067 -12.17220 -12.05735 -11.83890 -11.68535 -11.06102 -10.68024 -10.48110 -10.24224 -9.78894 -8.60648 -7.97594 -6.16804 1.17562 1.37907 1.39623 1.49555 2.31292 2.35298 2.44360 3.16183 3.22342 3.85056 4.07334 4.10736 4.21588 4.25576 4.32923 4.45578 4.54268 4.61972 4.77515 4.79122 4.83282 4.88390 4.91270 5.01121 5.06486 5.16203 5.18255 5.31862 5.35068 5.42043 5.46141 5.49403 5.77526 5.86529 5.95454 5.99325 6.29191 6.35919 6.74589 6.92686 7.49153 8.97073 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.011870 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.543281 B = 2358.286519 C = 3635.263206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C -0.082 4.082 4 C -0.175 4.175 5 C -0.135 4.135 6 C -0.082 4.082 7 O -0.197 6.197 8 C -0.014 4.014 9 C -0.063 4.063 10 C -0.123 4.123 11 C -0.164 4.164 12 C -0.172 4.172 13 C 0.141 3.859 14 H -0.009 1.009 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.015 3.985 18 N -0.897 5.897 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.287 1.287 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 1.280 -7.981 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.194 4.194 5 C -0.136 4.136 6 C -0.130 4.130 7 O -0.097 6.097 8 C -0.051 4.051 9 C -0.101 4.101 10 C -0.123 4.123 11 C -0.201 4.201 12 C -0.209 4.209 13 C 0.122 3.878 14 H 0.009 0.991 15 C -0.548 4.548 16 H 0.073 0.927 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.214 1.214 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.469 1.048 -8.156 8.925 hybrid contribution 0.930 -0.497 1.274 1.654 sum -2.540 0.552 -6.882 7.357 Atomic orbital electron populations 1.21715 0.93149 1.03000 1.01631 1.19985 0.96997 0.85987 1.03561 1.23040 1.09176 0.96812 0.84052 1.22375 1.02400 0.94468 1.00189 1.20774 1.01093 0.98601 0.93163 1.22685 1.08857 0.86530 0.94943 1.83686 1.67662 1.22886 1.35442 1.19993 1.00521 0.89397 0.95191 1.20989 0.97526 0.98653 0.92904 1.21547 1.02033 0.91187 0.97573 1.22831 0.99703 0.97891 0.99709 1.22992 0.91515 1.03604 1.02785 1.16815 0.94150 0.86975 0.89839 0.99074 1.21319 0.96142 1.11904 1.25474 0.92705 1.25673 0.99558 0.95898 0.97283 1.70005 1.31029 1.17172 1.35412 0.85640 0.80931 0.77656 0.78206 1.19264 1.20608 1.21371 0.89319 0.93555 0.92944 0.89791 0.89580 0.82472 0.89517 0.89089 0.92912 0.88200 0.90862 0.87162 0.86759 0.90962 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.89 71.98 0.71 -3.06 16 2 C -0.03 -0.93 6.47 29.85 0.19 -0.73 16 3 C -0.08 -3.64 6.58 24.88 0.16 -3.48 16 4 C -0.17 -9.02 9.11 22.07 0.20 -8.82 16 5 C -0.13 -6.94 5.08 -20.02 -0.10 -7.04 16 6 C -0.08 -3.70 7.17 24.93 0.18 -3.53 16 7 O -0.20 -8.91 10.65 -2.21 -0.02 -8.93 16 8 C -0.01 -0.49 6.28 30.00 0.19 -0.30 16 9 C -0.06 -2.20 5.58 30.73 0.17 -2.03 16 10 C -0.12 -4.98 1.25 -52.18 -0.07 -5.05 16 11 C -0.16 -5.79 9.86 30.52 0.30 -5.48 16 12 C -0.17 -5.84 9.94 30.52 0.30 -5.53 16 13 C 0.14 7.27 2.27 -12.08 -0.03 7.25 16 14 H -0.01 -0.51 8.03 -2.39 -0.02 -0.53 16 15 C -0.51 -28.34 8.33 25.60 0.21 -28.13 16 16 H 0.05 3.01 7.75 -2.91 -0.02 2.99 16 17 C 0.01 0.82 5.30 84.65 0.45 1.27 16 18 N -0.90 -51.26 8.96 21.45 0.19 -51.06 16 19 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.16 8.71 5.66 -2.91 -0.02 8.69 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 30 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 32 H 0.10 2.63 8.11 -2.38 -0.02 2.61 16 33 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.07 2.62 8.13 -2.39 -0.02 2.61 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -65.01 299.07 6.12 -58.90 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.04 Total: 19.25 kcal Atomic # 6 Polarization: -67.55 SS G_CDS: 2.88 Total: -64.66 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.19 Total: -51.06 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.02 Total: -8.93 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.01 6.12 -58.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.400 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds