Wall clock time and date at job start Mon Mar 30 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.24682 * 2 1 4 4 C 1.50641 * 109.25441 * 240.57498 * 2 1 3 5 5 C 1.38824 * 117.70880 * 77.44418 * 4 2 1 6 6 C 1.38423 * 120.50905 * 180.24348 * 5 4 2 7 7 O 1.35898 * 120.17495 * 180.02562 * 6 5 4 8 8 C 1.38763 * 119.65019 * 0.03605 * 6 5 4 9 9 C 1.37826 * 119.71443 * 359.88055 * 8 6 5 10 10 C 1.37714 * 122.55714 * 257.49614 * 4 2 1 11 11 C 1.50646 * 122.53857 * 359.25074 * 10 4 2 12 12 C 1.52726 * 110.59802 * 17.81004 * 11 10 4 13 13 C 1.52731 * 109.25649 * 119.46092 * 2 1 3 14 14 H 1.08991 * 109.68798 * 188.90160 * 13 2 1 15 15 C 1.50698 * 109.68176 * 309.45894 * 13 2 1 16 16 H 1.07995 * 120.00277 * 358.92230 * 15 13 2 17 17 C 1.37877 * 119.99953 * 178.91829 * 15 13 2 18 18 N 1.31511 * 120.00199 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99926 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47134 * 59.99909 * 19 17 15 21 21 H 1.48507 * 109.46798 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46822 * 299.99435 * 19 17 15 23 23 H 1.08999 * 109.47281 * 300.53261 * 1 2 3 24 24 H 1.08997 * 109.47260 * 60.54216 * 1 2 3 25 25 H 1.09001 * 109.46718 * 180.53435 * 1 2 3 26 26 H 1.08996 * 109.47190 * 179.46612 * 3 2 1 27 27 H 1.08994 * 109.46815 * 299.46654 * 3 2 1 28 28 H 1.09002 * 109.46731 * 59.46384 * 3 2 1 29 29 H 1.08002 * 119.74127 * 0.26356 * 5 4 2 30 30 H 0.96699 * 114.00309 * 89.99832 * 7 6 5 31 31 H 1.08006 * 120.14164 * 179.85797 * 8 6 5 32 32 H 1.08001 * 119.69255 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.25362 * 257.52157 * 11 10 4 34 34 H 1.09000 * 109.25303 * 138.10051 * 11 10 4 35 35 H 1.08993 * 109.68869 * 189.13628 * 12 11 10 36 36 H 1.09005 * 109.68055 * 68.58504 * 12 11 10 37 37 H 0.97005 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0267 -0.6987 -1.2387 5 6 1.9874 0.0035 -2.4356 6 6 2.4247 -0.5843 -3.6100 7 8 2.3836 0.1095 -4.7777 8 6 2.9052 -1.8860 -3.5886 9 6 2.9447 -2.5801 -2.3986 10 6 2.5084 -1.9887 -1.2192 11 6 2.5938 -2.8027 0.0456 12 6 1.7049 -2.2017 1.1324 13 6 2.0337 -0.7091 1.2554 14 1 3.1119 -0.5769 1.3442 15 6 1.3498 -0.1372 2.4704 16 1 0.6382 0.6677 2.3607 17 6 1.6324 -0.6416 3.7220 18 7 2.4992 -1.6216 3.8557 19 14 0.7841 0.0669 5.2280 20 1 -0.6849 -0.1049 5.0953 21 1 1.2583 -0.6431 6.4431 22 1 1.1052 1.5121 5.3428 23 1 -0.3634 0.5221 0.8852 24 1 -0.3633 0.5054 -0.8948 25 1 -0.3633 -1.0277 0.0096 26 1 3.1243 1.4488 0.0096 27 1 1.6768 1.9541 -0.8947 28 1 1.6611 1.9596 0.8852 29 1 1.6129 1.0165 -2.4504 30 1 3.1873 0.6140 -4.9640 31 1 3.2463 -2.3532 -4.5006 32 1 3.3183 -3.5933 -2.3824 33 1 3.6265 -2.8183 0.3939 34 1 2.2694 -3.8226 -0.1608 35 1 1.8986 -2.6998 2.0823 36 1 0.6568 -2.3255 0.8595 37 1 2.6979 -1.9767 4.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260732776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:17 Heat of formation + Delta-G solvation = -38.711135 kcal Electronic energy + Delta-G solvation = -18405.741104 eV Core-core repulsion = 15726.089843 eV Total energy + Delta-G solvation = -2679.651260 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04538 -37.79897 -35.46110 -33.24067 -32.12973 -29.65714 -28.46857 -26.43503 -26.07891 -24.21183 -22.27839 -21.51704 -20.13570 -18.63002 -16.99591 -16.19521 -15.51025 -15.38502 -14.71520 -14.46479 -13.76854 -13.53567 -13.00539 -12.94834 -12.68889 -12.46774 -12.00777 -11.67416 -11.37132 -11.24056 -11.01307 -10.83405 -10.81623 -10.55891 -10.48847 -10.33009 -10.01136 -9.82779 -9.45192 -8.89696 -8.60834 -8.38519 -8.22526 -7.86725 -5.97503 -4.02593 1.66308 1.77442 3.31715 3.36875 3.39264 4.00906 4.43306 4.51091 5.23649 5.27285 5.32090 5.47274 5.71882 5.84350 5.88050 5.92536 6.07475 6.23175 6.29891 6.32824 6.43208 6.50080 6.63883 6.68401 6.71533 6.75538 6.79182 6.95828 7.09065 7.12297 7.19640 7.24903 7.33717 7.54506 7.75539 7.89718 8.00236 8.12671 8.47181 8.99230 9.61110 11.08196 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037263 B = 0.006992 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.229706 B = 4003.800893 C = 4500.309316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.023 4.023 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.146 4.146 6 C 0.082 3.918 7 O -0.503 6.503 8 C -0.157 4.157 9 C -0.114 4.114 10 C -0.070 4.070 11 C -0.082 4.082 12 C -0.116 4.116 13 C 0.065 3.935 14 H 0.027 0.973 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.382 0.618 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 0.767 -10.675 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.023 4.023 3 C -0.185 4.185 4 C -0.033 4.033 5 C -0.164 4.164 6 C 0.039 3.961 7 O -0.313 6.313 8 C -0.176 4.176 9 C -0.133 4.133 10 C -0.070 4.070 11 C -0.119 4.119 12 C -0.154 4.154 13 C 0.047 3.953 14 H 0.045 0.955 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.236 0.764 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.643 0.408 -10.577 10.605 hybrid contribution 0.121 0.491 0.704 0.867 sum 0.764 0.900 -9.873 9.943 Atomic orbital electron populations 1.21839 0.94501 1.01459 1.00332 1.19598 0.95297 0.94545 0.92910 1.21843 1.00320 0.95788 1.00570 1.19871 0.95585 0.93053 0.94805 1.21510 1.02619 1.00792 0.91492 1.18335 1.01427 0.91415 0.84956 1.84813 1.42842 1.65657 1.37957 1.21161 1.03101 0.95107 0.98211 1.21050 1.00552 0.99718 0.91932 1.20006 0.97290 0.94216 0.95509 1.20617 1.01625 0.96802 0.92842 1.21730 0.96042 0.99608 0.98010 1.18647 0.96315 0.90778 0.89588 0.95459 1.21192 1.24273 1.18049 0.90804 0.92212 1.24945 0.95166 0.95109 0.98758 1.69861 1.33872 1.26059 1.23191 0.86748 0.79954 0.79215 0.82612 1.20360 1.21437 1.20404 0.91147 0.95171 0.93061 0.93556 0.94512 0.91572 0.85821 0.76387 0.86384 0.86343 0.91281 0.92695 0.88359 0.94389 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 7.80 37.16 0.29 -2.12 16 2 C -0.02 -0.47 0.41 -155.82 -0.06 -0.54 16 3 C -0.13 -2.38 7.83 37.16 0.29 -2.09 16 4 C -0.03 -0.62 4.71 -104.63 -0.49 -1.12 16 5 C -0.15 -2.49 8.83 -39.30 -0.35 -2.84 16 6 C 0.08 1.30 6.70 -39.32 -0.26 1.04 16 7 O -0.50 -6.87 13.51 -19.42 -0.26 -7.13 16 8 C -0.16 -2.38 9.99 -39.54 -0.40 -2.78 16 9 C -0.11 -1.83 9.60 -39.46 -0.38 -2.21 16 10 C -0.07 -1.30 5.74 -104.57 -0.60 -1.90 16 11 C -0.08 -1.59 5.67 -28.05 -0.16 -1.75 16 12 C -0.12 -2.64 5.10 -26.70 -0.14 -2.77 16 13 C 0.07 1.53 1.35 -91.74 -0.12 1.41 16 14 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 15 C -0.51 -12.95 7.16 -34.44 -0.25 -13.20 16 16 H 0.06 1.50 5.65 -52.49 -0.30 1.21 16 17 C 0.06 1.62 5.28 -17.82 -0.09 1.52 16 18 N -0.89 -24.50 11.32 55.43 0.63 -23.88 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.07 1.41 6.10 -51.93 -0.32 1.09 16 24 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 25 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.59 6.34 -51.93 -0.33 0.26 16 28 H 0.07 1.28 7.20 -51.93 -0.37 0.90 16 29 H 0.12 1.99 6.30 -52.49 -0.33 1.66 16 30 H 0.38 3.30 9.06 45.56 0.41 3.71 16 31 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.12 1.63 8.05 -52.49 -0.42 1.20 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 35 H 0.10 2.50 5.93 -51.93 -0.31 2.19 16 36 H 0.04 0.85 6.25 -51.93 -0.32 0.53 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 286.08 15.07 4.31 4.31 Total: -1.00 -28.09 286.08 -7.35 -35.44 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.29 Total: 4.96 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.72 Total: -29.34 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.63 Total: -23.88 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.26 Total: -7.13 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.09 -7.35 -35.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.267 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds