Wall clock time and date at job start Mon Mar 30 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.24682 * 2 1 4 4 C 1.50641 * 109.25441 * 240.57498 * 2 1 3 5 5 C 1.38824 * 117.70880 * 77.44418 * 4 2 1 6 6 C 1.38423 * 120.50905 * 180.24348 * 5 4 2 7 7 O 1.35898 * 120.17495 * 180.02562 * 6 5 4 8 8 C 1.38763 * 119.65019 * 0.03605 * 6 5 4 9 9 C 1.37826 * 119.71443 * 359.88055 * 8 6 5 10 10 C 1.37714 * 122.55714 * 257.49614 * 4 2 1 11 11 C 1.50646 * 122.53857 * 359.25074 * 10 4 2 12 12 C 1.52726 * 110.59802 * 17.81004 * 11 10 4 13 13 C 1.52731 * 109.25649 * 119.46092 * 2 1 3 14 14 H 1.08991 * 109.68798 * 188.90160 * 13 2 1 15 15 C 1.50698 * 109.68176 * 309.45894 * 13 2 1 16 16 H 1.07995 * 120.00277 * 358.92230 * 15 13 2 17 17 C 1.37877 * 119.99953 * 178.91829 * 15 13 2 18 18 N 1.31511 * 120.00199 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99926 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47134 * 59.99909 * 19 17 15 21 21 H 1.48507 * 109.46798 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46822 * 299.99435 * 19 17 15 23 23 H 1.08999 * 109.47281 * 300.53261 * 1 2 3 24 24 H 1.08997 * 109.47260 * 60.54216 * 1 2 3 25 25 H 1.09001 * 109.46718 * 180.53435 * 1 2 3 26 26 H 1.08996 * 109.47190 * 179.46612 * 3 2 1 27 27 H 1.08994 * 109.46815 * 299.46654 * 3 2 1 28 28 H 1.09002 * 109.46731 * 59.46384 * 3 2 1 29 29 H 1.08002 * 119.74127 * 0.26356 * 5 4 2 30 30 H 0.96699 * 114.00309 * 89.99832 * 7 6 5 31 31 H 1.08006 * 120.14164 * 179.85797 * 8 6 5 32 32 H 1.08001 * 119.69255 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.25362 * 257.52157 * 11 10 4 34 34 H 1.09000 * 109.25303 * 138.10051 * 11 10 4 35 35 H 1.08993 * 109.68869 * 189.13628 * 12 11 10 36 36 H 1.09005 * 109.68055 * 68.58504 * 12 11 10 37 37 H 0.97005 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0267 -0.6987 -1.2387 5 6 1.9874 0.0035 -2.4356 6 6 2.4247 -0.5843 -3.6100 7 8 2.3836 0.1095 -4.7777 8 6 2.9052 -1.8860 -3.5886 9 6 2.9447 -2.5801 -2.3986 10 6 2.5084 -1.9887 -1.2192 11 6 2.5938 -2.8027 0.0456 12 6 1.7049 -2.2017 1.1324 13 6 2.0337 -0.7091 1.2554 14 1 3.1119 -0.5769 1.3442 15 6 1.3498 -0.1372 2.4704 16 1 0.6382 0.6677 2.3607 17 6 1.6324 -0.6416 3.7220 18 7 2.4992 -1.6216 3.8557 19 14 0.7841 0.0669 5.2280 20 1 -0.6849 -0.1049 5.0953 21 1 1.2583 -0.6431 6.4431 22 1 1.1052 1.5121 5.3428 23 1 -0.3634 0.5221 0.8852 24 1 -0.3633 0.5054 -0.8948 25 1 -0.3633 -1.0277 0.0096 26 1 3.1243 1.4488 0.0096 27 1 1.6768 1.9541 -0.8947 28 1 1.6611 1.9596 0.8852 29 1 1.6129 1.0165 -2.4504 30 1 3.1873 0.6140 -4.9640 31 1 3.2463 -2.3532 -4.5006 32 1 3.3183 -3.5933 -2.3824 33 1 3.6265 -2.8183 0.3939 34 1 2.2694 -3.8226 -0.1608 35 1 1.8986 -2.6998 2.0823 36 1 0.6568 -2.3255 0.8595 37 1 2.6979 -1.9767 4.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260732776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:17 Heat of formation + Delta-G solvation = -54.638516 kcal Electronic energy + Delta-G solvation = -18406.431767 eV Core-core repulsion = 15726.089843 eV Total energy + Delta-G solvation = -2680.341923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43214 -39.10538 -36.82970 -34.90546 -33.89610 -31.05562 -29.96745 -27.98793 -27.79643 -25.90429 -23.64580 -23.07479 -21.65184 -20.01544 -18.41956 -18.07686 -16.97685 -16.68951 -16.22640 -16.02897 -15.27481 -15.06315 -14.57531 -14.36828 -14.22334 -14.05596 -13.55411 -13.16565 -12.95396 -12.77150 -12.65432 -12.59433 -12.29392 -12.25880 -12.12954 -11.94650 -11.63271 -11.37065 -11.21360 -10.62903 -10.41053 -10.28137 -9.60977 -9.18598 -8.00502 -6.11109 0.40263 0.50542 1.44715 1.45094 1.51740 2.47922 2.76321 3.26899 3.38676 3.91299 3.96943 4.14969 4.32090 4.38447 4.40198 4.52244 4.62073 4.69522 4.83892 4.91082 4.95005 5.06068 5.11369 5.17262 5.22858 5.34793 5.39893 5.43580 5.49651 5.53554 5.58538 5.59921 5.75988 6.00979 6.02647 6.07790 6.22699 6.50258 6.93765 6.98645 7.55079 9.03910 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037263 B = 0.006992 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.229706 B = 4003.800893 C = 4500.309316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.023 4.023 3 C -0.123 4.123 4 C -0.052 4.052 5 C -0.153 4.153 6 C 0.093 3.907 7 O -0.507 6.507 8 C -0.153 4.153 9 C -0.109 4.109 10 C -0.096 4.096 11 C -0.074 4.074 12 C -0.111 4.111 13 C 0.067 3.933 14 H -0.011 1.011 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.944 3.056 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.133 0.867 30 H 0.407 0.593 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 1.204 -12.985 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.180 4.180 4 C -0.052 4.052 5 C -0.172 4.172 6 C 0.048 3.952 7 O -0.319 6.319 8 C -0.171 4.171 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.111 4.111 12 C -0.149 4.149 13 C 0.049 3.951 14 H 0.007 0.993 15 C -0.551 4.551 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.770 3.230 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.265 0.735 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.348 0.867 -12.901 12.935 hybrid contribution 0.248 0.377 1.319 1.394 sum 0.596 1.244 -11.582 11.664 Atomic orbital electron populations 1.21755 0.94027 1.00874 1.00825 1.19472 0.95679 0.95069 0.92075 1.21780 0.99813 0.95089 1.01304 1.19775 0.97060 0.93527 0.94837 1.21547 1.03168 1.01117 0.91332 1.18388 0.99957 0.91770 0.85036 1.84752 1.44717 1.65853 1.36601 1.21475 1.01973 0.94773 0.98877 1.21250 0.99527 1.00730 0.91210 1.19982 0.99398 0.94440 0.95823 1.20451 1.00070 0.97940 0.92615 1.21538 0.96522 0.99105 0.97751 1.18524 0.93730 0.91847 0.91034 0.99330 1.21551 1.23934 1.17771 0.91797 0.92026 1.25656 0.95949 0.95585 1.01435 1.70010 1.35237 1.27251 1.23405 0.85834 0.79114 0.78574 0.79444 1.19797 1.21562 1.19903 0.92387 0.92822 0.94115 0.94283 0.91618 0.92924 0.84963 0.73486 0.83408 0.84040 0.92479 0.90792 0.91622 0.94730 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 7.80 71.98 0.56 -3.95 16 2 C -0.02 -0.92 0.41 -53.03 -0.02 -0.94 16 3 C -0.12 -4.51 7.83 71.98 0.56 -3.95 16 4 C -0.05 -1.91 4.71 -19.87 -0.09 -2.00 16 5 C -0.15 -4.84 8.83 22.45 0.20 -4.64 16 6 C 0.09 2.59 6.70 22.44 0.15 2.74 16 7 O -0.51 -11.64 13.51 -92.40 -1.25 -12.89 16 8 C -0.15 -4.02 9.99 22.30 0.22 -3.80 16 9 C -0.11 -3.20 9.60 22.35 0.21 -2.98 16 10 C -0.10 -3.48 5.74 -19.83 -0.11 -3.60 16 11 C -0.07 -2.90 5.67 29.74 0.17 -2.73 16 12 C -0.11 -5.24 5.10 30.61 0.16 -5.08 16 13 C 0.07 3.27 1.35 -11.52 -0.02 3.26 16 14 H -0.01 -0.64 8.08 -2.39 -0.02 -0.66 16 15 C -0.51 -27.03 7.16 25.60 0.18 -26.84 16 16 H 0.06 3.16 5.65 -2.91 -0.02 3.14 16 17 C 0.01 0.63 5.28 84.66 0.45 1.07 16 18 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 19 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H 0.06 2.32 6.10 -2.39 -0.01 2.30 16 24 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 25 H 0.04 1.61 6.43 -2.39 -0.02 1.59 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 2.00 6.34 -2.39 -0.02 1.98 16 28 H 0.05 2.03 7.20 -2.39 -0.02 2.02 16 29 H 0.13 3.85 6.30 -2.91 -0.02 3.83 16 30 H 0.41 5.20 9.06 -74.06 -0.67 4.53 16 31 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.14 3.41 8.05 -2.91 -0.02 3.39 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 35 H 0.07 3.51 5.93 -2.39 -0.01 3.49 16 36 H 0.03 1.60 6.25 -2.38 -0.01 1.58 16 37 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -61.31 286.08 4.05 -57.25 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.41 Total: 16.15 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 2.62 Total: -53.45 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.24 Total: -52.24 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.25 Total: -12.89 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.31 4.05 -57.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -61.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds