Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38008 * 119.89571 * 2 1 4 4 C 1.38250 * 119.96101 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.98238 * 0.09093 * 4 3 2 6 6 C 1.38465 * 120.31684 * 359.97438 * 5 4 3 7 7 C 1.38419 * 119.82953 * 359.82796 * 6 5 4 8 8 O 1.35844 * 121.79438 * 180.54507 * 7 6 5 9 9 C 1.42818 * 117.85981 * 342.59201 * 8 7 6 10 10 C 1.53001 * 109.68337 * 168.94613 * 9 8 7 11 11 C 1.53002 * 109.68117 * 289.49330 * 9 8 7 12 12 C 1.53405 * 108.39334 * 49.21703 * 9 8 7 13 13 C 1.50768 * 118.77473 * 179.56332 * 6 5 4 14 14 H 1.08994 * 109.43545 * 282.27134 * 13 6 5 15 15 C 1.50701 * 109.43365 * 42.14449 * 13 6 5 16 16 H 1.07998 * 120.00254 * 35.06839 * 15 13 6 17 17 C 1.37881 * 119.99425 * 215.06476 * 15 13 6 18 18 N 1.31513 * 120.00189 * 5.70061 * 17 15 13 19 19 Si 1.86801 * 119.99545 * 185.70081 * 17 15 13 20 20 H 1.48496 * 109.47273 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47097 * 120.00580 * 19 17 15 22 22 H 1.48506 * 109.46850 * 240.00106 * 19 17 15 23 23 H 1.09006 * 109.47159 * 90.00032 * 1 2 3 24 24 H 1.08999 * 109.47277 * 209.99708 * 1 2 3 25 25 H 1.09001 * 109.47242 * 330.00253 * 1 2 3 26 26 H 1.08006 * 120.01971 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.00803 * 180.10478 * 4 3 2 28 28 H 1.08002 * 119.84403 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46919 * 59.99697 * 10 9 8 30 30 H 1.08994 * 109.47465 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.46410 * 300.00169 * 10 9 8 32 32 H 1.09000 * 109.47303 * 60.00310 * 11 9 8 33 33 H 1.09001 * 109.47185 * 180.02562 * 11 9 8 34 34 H 1.08993 * 109.47531 * 300.00328 * 11 9 8 35 35 H 1.09006 * 109.69244 * 55.02056 * 12 9 8 36 36 H 1.09000 * 109.69314 * 175.61256 * 12 9 8 37 37 H 0.97003 * 119.99654 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1964 0.0000 4 6 3.5773 1.1980 0.0005 5 6 4.2691 0.0022 -0.0008 6 6 3.5844 -1.2013 -0.0022 7 6 2.2002 -1.2060 0.0014 8 8 1.4884 -2.3630 0.0112 9 6 2.1639 -3.5653 -0.3600 10 6 1.2873 -4.7736 -0.0245 11 6 2.4634 -3.5460 -1.8603 12 6 3.4777 -3.6455 0.4280 13 6 4.3741 -2.4856 -0.0137 14 1 4.7435 -2.6751 -1.0215 15 6 5.5407 -2.3653 0.9328 16 1 5.4381 -1.8001 1.8473 17 6 6.7389 -2.9771 0.6311 18 7 6.9002 -3.5700 -0.5317 19 14 8.1333 -2.9636 1.8741 20 1 7.7014 -2.2364 3.0946 21 1 8.4926 -4.3598 2.2300 22 1 9.3148 -2.2833 1.2852 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6534 2.1310 0.0004 27 1 4.1164 2.1339 0.0022 28 1 5.3491 0.0060 -0.0008 29 1 0.3472 -4.7035 -0.5716 30 1 1.8061 -5.6890 -0.3087 31 1 1.0843 -4.7888 1.0463 32 1 3.0958 -2.6894 -2.0936 33 1 2.9784 -4.4650 -2.1399 34 1 1.5291 -3.4699 -2.4164 35 1 3.2713 -3.5655 1.4953 36 1 3.9740 -4.5932 0.2192 37 1 7.7434 -4.0001 -0.7440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260783340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -36.624228 kcal Electronic energy + Delta-G solvation = -18547.459041 eV Core-core repulsion = 15867.898275 eV Total energy + Delta-G solvation = -2679.560765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20388 -37.22008 -34.75012 -32.73695 -31.84131 -30.59399 -27.68264 -26.94405 -26.24705 -25.03255 -22.68116 -21.50593 -20.25951 -18.19782 -16.59540 -16.39504 -15.55411 -14.89124 -14.56128 -14.30049 -13.74682 -13.38011 -13.17131 -12.95093 -12.48508 -12.24082 -12.16945 -11.85536 -11.70567 -11.54158 -11.42948 -11.20729 -11.01884 -10.85843 -10.65720 -10.54232 -10.22349 -10.12171 -9.78320 -9.16201 -8.91718 -8.57110 -7.72369 -7.26228 -6.11767 -4.14348 2.15364 2.22463 3.23927 3.32952 3.37973 3.94179 4.35013 4.58214 5.13667 5.37519 5.45759 5.50119 5.52863 5.61857 5.80885 5.88371 5.99289 6.01056 6.04421 6.13239 6.21259 6.24956 6.31208 6.39502 6.47284 6.48167 6.66020 6.80698 6.85282 6.94890 7.12800 7.24097 7.32029 7.60045 7.67379 7.75056 7.83239 8.26786 8.34437 8.94089 9.48804 10.96438 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.009387 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.089377 B = 2981.979922 C = 3907.298607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.134 4.134 3 C -0.114 4.114 4 C -0.164 4.164 5 C -0.074 4.074 6 C -0.112 4.112 7 C 0.118 3.882 8 O -0.316 6.316 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.166 4.166 12 C -0.127 4.127 13 C 0.067 3.933 14 H 0.078 0.922 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 2.520 -0.935 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C -0.133 4.133 4 C -0.182 4.182 5 C -0.092 4.092 6 C -0.113 4.113 7 C 0.073 3.927 8 O -0.232 6.232 9 C 0.067 3.933 10 C -0.190 4.190 11 C -0.224 4.224 12 C -0.165 4.165 13 C 0.049 3.951 14 H 0.096 0.904 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.212 2.371 -0.994 9.564 hybrid contribution 1.152 -0.070 0.624 1.312 sum -8.060 2.301 -0.370 8.390 Atomic orbital electron populations 1.20488 0.91738 1.01744 1.01251 1.19238 0.95579 0.90923 1.07692 1.20552 0.94149 0.95967 1.02586 1.20953 0.94020 0.97836 1.05410 1.21084 1.00616 0.90800 0.96728 1.20746 0.91460 0.98825 1.00236 1.18580 0.90174 0.85147 0.98776 1.85846 1.39632 1.13980 1.83697 1.22002 0.93782 0.82878 0.94602 1.21734 0.99292 0.95895 1.02073 1.22322 1.01287 1.03528 0.95213 1.22398 0.93274 1.02201 0.98655 1.18008 0.91517 0.85542 1.00013 0.90379 1.21021 0.95177 1.32468 1.05583 0.92449 1.24984 0.98397 0.95178 0.95101 1.69911 1.25627 1.36674 1.20693 0.86554 0.82046 0.77855 0.81743 1.19621 1.20909 1.20959 0.92410 0.91663 0.92701 0.86948 0.87155 0.85337 0.92508 0.90907 0.92102 0.91368 0.91331 0.93099 0.92505 0.91163 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.76 36.00 0.35 -1.08 16 2 C -0.13 -2.47 5.90 -104.39 -0.62 -3.09 16 3 C -0.11 -1.98 9.69 -39.66 -0.38 -2.36 16 4 C -0.16 -3.00 10.04 -39.61 -0.40 -3.40 16 5 C -0.07 -1.59 9.10 -39.53 -0.36 -1.95 16 6 C -0.11 -2.53 4.86 -104.44 -0.51 -3.04 16 7 C 0.12 2.47 6.01 -39.19 -0.24 2.23 16 8 O -0.32 -6.34 8.60 -19.25 -0.17 -6.51 16 9 C 0.10 1.97 1.13 -90.41 -0.10 1.87 16 10 C -0.13 -2.02 8.88 37.16 0.33 -1.69 16 11 C -0.17 -2.99 8.17 37.16 0.30 -2.69 16 12 C -0.13 -2.79 4.39 -26.47 -0.12 -2.91 16 13 C 0.07 1.64 1.81 -92.84 -0.17 1.47 16 14 H 0.08 2.09 6.06 -51.93 -0.31 1.78 16 15 C -0.50 -13.41 7.00 -34.44 -0.24 -13.65 16 16 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 17 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 18 N -0.89 -24.72 12.77 55.43 0.71 -24.01 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.00 7.44 -51.93 -0.39 0.62 16 25 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.13 2.86 7.35 -52.49 -0.39 2.48 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.37 5.85 -51.93 -0.30 1.07 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -27.96 296.53 -7.83 -35.80 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.58 Total: 3.08 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -2.24 Total: -28.62 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.71 Total: -24.01 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.17 Total: -6.51 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.96 -7.83 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.829 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds