Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38008 * 119.89571 * 2 1 4 4 C 1.38250 * 119.96101 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.98238 * 0.09093 * 4 3 2 6 6 C 1.38465 * 120.31684 * 359.97438 * 5 4 3 7 7 C 1.38419 * 119.82953 * 359.82796 * 6 5 4 8 8 O 1.35844 * 121.79438 * 180.54507 * 7 6 5 9 9 C 1.42818 * 117.85981 * 342.59201 * 8 7 6 10 10 C 1.53001 * 109.68337 * 168.94613 * 9 8 7 11 11 C 1.53002 * 109.68117 * 289.49330 * 9 8 7 12 12 C 1.53405 * 108.39334 * 49.21703 * 9 8 7 13 13 C 1.50768 * 118.77473 * 179.56332 * 6 5 4 14 14 H 1.08994 * 109.43545 * 282.27134 * 13 6 5 15 15 C 1.50701 * 109.43365 * 42.14449 * 13 6 5 16 16 H 1.07998 * 120.00254 * 35.06839 * 15 13 6 17 17 C 1.37881 * 119.99425 * 215.06476 * 15 13 6 18 18 N 1.31513 * 120.00189 * 5.70061 * 17 15 13 19 19 Si 1.86801 * 119.99545 * 185.70081 * 17 15 13 20 20 H 1.48496 * 109.47273 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47097 * 120.00580 * 19 17 15 22 22 H 1.48506 * 109.46850 * 240.00106 * 19 17 15 23 23 H 1.09006 * 109.47159 * 90.00032 * 1 2 3 24 24 H 1.08999 * 109.47277 * 209.99708 * 1 2 3 25 25 H 1.09001 * 109.47242 * 330.00253 * 1 2 3 26 26 H 1.08006 * 120.01971 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.00803 * 180.10478 * 4 3 2 28 28 H 1.08002 * 119.84403 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46919 * 59.99697 * 10 9 8 30 30 H 1.08994 * 109.47465 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.46410 * 300.00169 * 10 9 8 32 32 H 1.09000 * 109.47303 * 60.00310 * 11 9 8 33 33 H 1.09001 * 109.47185 * 180.02562 * 11 9 8 34 34 H 1.08993 * 109.47531 * 300.00328 * 11 9 8 35 35 H 1.09006 * 109.69244 * 55.02056 * 12 9 8 36 36 H 1.09000 * 109.69314 * 175.61256 * 12 9 8 37 37 H 0.97003 * 119.99654 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1964 0.0000 4 6 3.5773 1.1980 0.0005 5 6 4.2691 0.0022 -0.0008 6 6 3.5844 -1.2013 -0.0022 7 6 2.2002 -1.2060 0.0014 8 8 1.4884 -2.3630 0.0112 9 6 2.1639 -3.5653 -0.3600 10 6 1.2873 -4.7736 -0.0245 11 6 2.4634 -3.5460 -1.8603 12 6 3.4777 -3.6455 0.4280 13 6 4.3741 -2.4856 -0.0137 14 1 4.7435 -2.6751 -1.0215 15 6 5.5407 -2.3653 0.9328 16 1 5.4381 -1.8001 1.8473 17 6 6.7389 -2.9771 0.6311 18 7 6.9002 -3.5700 -0.5317 19 14 8.1333 -2.9636 1.8741 20 1 7.7014 -2.2364 3.0946 21 1 8.4926 -4.3598 2.2300 22 1 9.3148 -2.2833 1.2852 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6534 2.1310 0.0004 27 1 4.1164 2.1339 0.0022 28 1 5.3491 0.0060 -0.0008 29 1 0.3472 -4.7035 -0.5716 30 1 1.8061 -5.6890 -0.3087 31 1 1.0843 -4.7888 1.0463 32 1 3.0958 -2.6894 -2.0936 33 1 2.9784 -4.4650 -2.1399 34 1 1.5291 -3.4699 -2.4164 35 1 3.2713 -3.5655 1.4953 36 1 3.9740 -4.5932 0.2192 37 1 7.7434 -4.0001 -0.7440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260783340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -50.581218 kcal Electronic energy + Delta-G solvation = -18548.064261 eV Core-core repulsion = 15867.898275 eV Total energy + Delta-G solvation = -2680.165986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76928 -38.70850 -36.50387 -34.45498 -33.41322 -32.21379 -29.32183 -28.30504 -27.73810 -26.83243 -24.35527 -23.09374 -21.82159 -19.77284 -18.50157 -18.10195 -17.11318 -16.64274 -16.21848 -15.84902 -15.27060 -14.93592 -14.79248 -14.40643 -14.11596 -13.70357 -13.57885 -13.23880 -13.06512 -13.00898 -12.93824 -12.86860 -12.67555 -12.58836 -12.29547 -12.20807 -11.94794 -11.78917 -11.38519 -11.06520 -10.74495 -10.53779 -9.30045 -8.82015 -8.17615 -6.26681 0.61842 0.69100 1.35273 1.38208 1.49583 2.37672 2.46364 3.02040 3.10137 3.92286 3.98543 4.05987 4.11254 4.17531 4.36311 4.49192 4.58138 4.67007 4.73131 4.76788 4.84794 4.88421 4.93538 4.98365 5.01671 5.03861 5.14543 5.22161 5.34981 5.42372 5.49587 5.58897 5.70911 5.74069 5.77665 6.03831 6.14996 6.32913 6.71708 6.86534 7.38356 8.89733 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.009387 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.089377 B = 2981.979922 C = 3907.298607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.158 4.158 5 C -0.101 4.101 6 C -0.143 4.143 7 C 0.099 3.901 8 O -0.316 6.316 9 C 0.105 3.895 10 C -0.127 4.127 11 C -0.160 4.160 12 C -0.120 4.120 13 C 0.069 3.931 14 H 0.044 0.956 15 C -0.514 4.514 16 H 0.042 0.958 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.140 0.860 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 3.665 -0.651 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C -0.122 4.122 4 C -0.176 4.176 5 C -0.119 4.119 6 C -0.144 4.144 7 C 0.055 3.945 8 O -0.231 6.231 9 C 0.067 3.933 10 C -0.184 4.184 11 C -0.217 4.217 12 C -0.159 4.159 13 C 0.051 3.949 14 H 0.062 0.938 15 C -0.552 4.552 16 H 0.061 0.939 17 C -0.180 4.180 18 N -0.560 5.560 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.174 0.826 27 H 0.158 0.842 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.303 3.518 -0.706 11.859 hybrid contribution 1.764 -0.333 0.518 1.868 sum -9.539 3.185 -0.188 10.058 Atomic orbital electron populations 1.20544 0.88862 1.02906 1.02520 1.19778 0.97749 0.90213 1.05864 1.21048 0.93669 0.97333 1.00132 1.21259 0.94989 0.97561 1.03822 1.21050 0.99742 0.92183 0.98916 1.20651 0.92664 0.98175 1.02891 1.18826 0.89632 0.86493 0.99578 1.85847 1.39363 1.14003 1.83868 1.22106 0.92781 0.84033 0.94358 1.21736 0.99659 0.94346 1.02643 1.22255 1.01949 1.02425 0.95096 1.22209 0.95001 1.00412 0.98243 1.17815 0.91745 0.87782 0.97554 0.93821 1.21207 0.96575 1.32061 1.05405 0.93922 1.25671 1.00579 0.95009 0.96701 1.70021 1.26243 1.37612 1.22105 0.85617 0.79268 0.77986 0.79513 1.19537 1.20256 1.20409 0.90936 0.92262 0.89832 0.82563 0.84210 0.87757 0.90163 0.89582 0.91877 0.94330 0.90917 0.90532 0.93912 0.92610 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 9.76 71.24 0.69 -1.70 16 2 C -0.14 -4.66 5.90 -19.71 -0.12 -4.78 16 3 C -0.10 -3.24 9.69 22.22 0.22 -3.02 16 4 C -0.16 -5.55 10.04 22.25 0.22 -5.32 16 5 C -0.10 -4.45 9.10 22.30 0.20 -4.25 16 6 C -0.14 -6.70 4.86 -19.75 -0.10 -6.80 16 7 C 0.10 4.13 6.01 22.52 0.14 4.27 16 8 O -0.32 -12.40 8.60 -91.79 -0.79 -13.19 16 9 C 0.10 3.92 1.13 -10.66 -0.01 3.91 16 10 C -0.13 -3.63 8.88 71.98 0.64 -2.99 16 11 C -0.16 -5.77 8.17 71.98 0.59 -5.18 16 12 C -0.12 -5.52 4.39 30.76 0.14 -5.38 16 13 C 0.07 3.57 1.81 -12.23 -0.02 3.55 16 14 H 0.04 2.52 6.06 -2.39 -0.01 2.50 16 15 C -0.51 -28.78 7.00 25.60 0.18 -28.60 16 16 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 17 C 0.02 1.08 5.45 84.66 0.46 1.54 16 18 N -0.92 -53.22 12.77 21.45 0.27 -52.95 16 19 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.06 1.63 7.44 -2.39 -0.02 1.61 16 25 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 26 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 27 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 28 H 0.10 4.97 7.35 -2.91 -0.02 4.95 16 29 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.60 5.85 -2.39 -0.01 1.59 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.04 2.02 8.10 -2.38 -0.02 2.00 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -63.10 296.53 5.78 -57.33 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.04 Total: 17.60 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.23 Total: -54.76 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.27 Total: -52.95 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.79 Total: -13.19 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -63.10 5.78 -57.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.745 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds