Wall clock time and date at job start Mon Mar 30 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.68009 * 2 1 4 4 C 1.53406 * 109.68868 * 120.52187 * 2 1 3 5 5 C 1.53072 * 108.29598 * 55.01170 * 4 2 1 6 6 C 1.50765 * 109.68229 * 48.21505 * 5 4 2 7 7 C 1.38505 * 118.76937 * 162.17234 * 6 5 4 8 8 C 1.38101 * 120.31795 * 179.84071 * 7 6 5 9 9 C 1.38288 * 119.98629 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.02407 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47507 * 89.99497 * 10 9 8 12 12 H 1.08000 * 119.99459 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00268 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00288 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47202 * 90.00324 * 15 13 11 17 17 H 1.48497 * 109.47488 * 210.00282 * 15 13 11 18 18 H 1.48500 * 109.47237 * 330.00910 * 15 13 11 19 19 C 1.37969 * 119.95680 * 0.08187 * 9 8 7 20 20 C 1.38369 * 121.40256 * 342.14897 * 6 5 4 21 21 O 1.35846 * 121.80672 * 0.52514 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.47778 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.47969 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.47950 * 1 2 3 25 25 H 1.08995 * 109.46969 * 60.00277 * 3 2 1 26 26 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46699 * 299.99959 * 3 2 1 28 28 H 1.08992 * 109.70629 * 174.71708 * 4 2 1 29 29 H 1.09009 * 109.69505 * 295.27677 * 4 2 1 30 30 H 1.09001 * 109.43322 * 168.28069 * 5 4 2 31 31 H 1.09008 * 109.44006 * 288.18790 * 5 4 2 32 32 H 1.08006 * 119.83999 * 359.82171 * 7 6 5 33 33 H 1.08004 * 120.00723 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47439 * 210.00644 * 10 9 8 35 35 H 1.09005 * 109.47015 * 329.99926 * 10 9 8 36 36 H 0.97008 * 120.00169 * 179.97438 * 14 13 11 37 37 H 1.07998 * 119.89144 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4407 0.0000 4 6 2.0468 -0.7335 1.2442 5 6 1.4241 -2.1316 1.2711 6 6 1.5711 -2.7791 -0.0824 7 6 1.4231 -4.1525 -0.1840 8 6 1.5479 -4.7784 -1.4087 9 6 1.8215 -4.0332 -2.5410 10 6 1.9573 -4.7153 -3.8779 11 6 0.6099 -4.7759 -4.5502 12 1 -0.2579 -4.3616 -4.0586 13 6 0.4853 -5.3594 -5.7931 14 7 1.5421 -5.8635 -6.3919 15 14 -1.1847 -5.4340 -6.6268 16 1 -1.3801 -4.2160 -7.4536 17 1 -1.2517 -6.6372 -7.4945 18 1 -2.2502 -5.5078 -5.5950 19 6 1.9711 -2.6650 -2.4458 20 6 1.8482 -2.0312 -1.2131 21 8 2.0111 -0.6837 -1.1581 22 1 -0.3633 0.5057 0.8946 23 1 -0.3633 -1.0276 -0.0093 24 1 -0.3634 0.5219 -0.8853 25 1 1.6838 1.9558 0.8900 26 1 3.1352 1.4368 -0.0005 27 1 1.6838 1.9558 -0.8900 28 1 3.1326 -0.8159 1.1978 29 1 1.7580 -0.1847 2.1407 30 1 1.9301 -2.7397 2.0210 31 1 0.3662 -2.0528 1.5219 32 1 1.2093 -4.7367 0.6989 33 1 1.4311 -5.8496 -1.4822 34 1 2.6507 -4.1535 -4.5037 35 1 2.3367 -5.7268 -3.7329 36 1 1.4544 -6.2744 -7.2662 37 1 2.1843 -2.0840 -3.3309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260815704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:57 Heat of formation + Delta-G solvation = -40.007611 kcal Electronic energy + Delta-G solvation = -17737.278836 eV Core-core repulsion = 15057.571356 eV Total energy + Delta-G solvation = -2679.707480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60329 -37.59099 -34.59860 -33.59464 -32.10605 -29.98248 -28.97645 -27.47829 -26.61882 -23.98757 -22.56207 -22.09356 -21.24371 -18.33773 -16.76924 -16.25474 -15.96904 -15.37176 -14.89307 -14.48192 -14.37950 -13.98580 -13.34554 -13.03619 -12.71021 -12.67083 -12.35234 -12.21030 -12.04770 -11.93798 -11.82781 -11.27824 -11.03044 -10.87960 -10.73971 -10.54107 -10.48800 -10.35028 -10.04079 -9.46193 -9.38079 -8.40506 -7.88868 -7.46582 -6.02369 -4.05959 2.03908 2.10425 3.32156 3.38077 3.42281 3.52042 4.35267 4.50967 4.63088 4.72487 4.82589 5.06409 5.17394 5.32334 5.37366 5.42074 5.50756 5.56109 5.67092 5.71172 5.78339 5.81896 5.95448 5.98742 6.05549 6.20871 6.23916 6.29240 6.49312 6.72146 6.93569 7.10841 7.21520 7.46969 7.59798 7.87412 7.93509 8.02466 8.33677 8.99012 9.57597 11.07650 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.005485 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.609136 B = 5103.701264 C = 5402.359829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.112 3.888 3 C -0.137 4.137 4 C -0.145 4.145 5 C -0.069 4.069 6 C -0.192 4.192 7 C -0.090 4.090 8 C -0.153 4.153 9 C -0.002 4.002 10 C 0.047 3.953 11 C -0.510 4.510 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.153 4.153 20 C 0.130 3.870 21 O -0.312 6.312 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 10.523 15.430 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.074 3.926 3 C -0.194 4.194 4 C -0.182 4.182 5 C -0.106 4.106 6 C -0.193 4.193 7 C -0.108 4.108 8 C -0.171 4.171 9 C -0.002 4.002 10 C 0.011 3.989 11 C -0.548 4.548 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.172 4.172 20 C 0.086 3.914 21 O -0.227 6.227 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.149 10.561 15.135 18.456 hybrid contribution -1.028 -0.216 -0.368 1.113 sum -0.879 10.345 14.766 18.051 Atomic orbital electron populations 1.22412 0.94852 1.03472 1.02489 1.21751 0.93726 0.92339 0.84807 1.21761 1.02002 0.92982 1.02682 1.22226 1.01445 0.96588 0.97987 1.20377 1.00868 0.94935 0.94454 1.19474 1.11449 0.94430 0.93928 1.20749 0.99608 0.92950 0.97510 1.20974 1.04000 1.00119 0.92011 1.20469 0.90224 0.92231 0.97294 1.18377 0.97850 0.95577 0.87132 1.21041 0.93560 1.38088 1.02153 0.92457 1.25000 0.96784 0.95325 0.97184 1.69961 1.28823 1.39031 1.15530 0.86535 0.84181 0.77554 0.79441 1.20573 1.21150 1.19817 1.20533 1.07142 0.94670 0.94808 1.18629 0.97701 0.81640 0.93428 1.86013 1.77083 1.17556 1.42062 0.91513 0.91314 0.91661 0.90837 0.91680 0.91498 0.90795 0.90534 0.90947 0.91157 0.86964 0.86281 0.95167 0.95063 0.92845 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.14 37.16 0.30 -1.80 16 2 C 0.11 1.43 1.13 -90.41 -0.10 1.32 16 3 C -0.14 -1.37 8.88 37.16 0.33 -1.04 16 4 C -0.14 -1.65 5.10 -26.48 -0.14 -1.78 16 5 C -0.07 -0.88 5.21 -27.81 -0.14 -1.02 16 6 C -0.19 -3.23 5.18 -104.44 -0.54 -3.77 16 7 C -0.09 -1.55 9.67 -39.53 -0.38 -1.93 16 8 C -0.15 -3.08 9.70 -39.61 -0.38 -3.46 16 9 C 0.00 -0.05 5.06 -104.70 -0.53 -0.58 16 10 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 11 C -0.51 -14.54 9.09 -34.44 -0.31 -14.85 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 15 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.15 -3.27 9.59 -39.34 -0.38 -3.65 16 20 C 0.13 2.45 6.02 -39.19 -0.24 2.22 16 21 O -0.31 -5.36 9.68 -19.26 -0.19 -5.54 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.94 5.88 -51.93 -0.31 0.63 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.82 7.00 -51.92 -0.36 0.46 16 32 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 34 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.12 2.68 8.06 -52.49 -0.42 2.25 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -30.61 301.56 -8.38 -39.00 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.70 Total: -1.16 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.76 Total: -27.67 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.19 Total: -5.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.61 -8.38 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.009 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds