Wall clock time and date at job start Mon Mar 30 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.68009 * 2 1 4 4 C 1.53406 * 109.68868 * 120.52187 * 2 1 3 5 5 C 1.53072 * 108.29598 * 55.01170 * 4 2 1 6 6 C 1.50765 * 109.68229 * 48.21505 * 5 4 2 7 7 C 1.38505 * 118.76937 * 162.17234 * 6 5 4 8 8 C 1.38101 * 120.31795 * 179.84071 * 7 6 5 9 9 C 1.38288 * 119.98629 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.02407 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47507 * 89.99497 * 10 9 8 12 12 H 1.08000 * 119.99459 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00268 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00288 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47202 * 90.00324 * 15 13 11 17 17 H 1.48497 * 109.47488 * 210.00282 * 15 13 11 18 18 H 1.48500 * 109.47237 * 330.00910 * 15 13 11 19 19 C 1.37969 * 119.95680 * 0.08187 * 9 8 7 20 20 C 1.38369 * 121.40256 * 342.14897 * 6 5 4 21 21 O 1.35846 * 121.80672 * 0.52514 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.47778 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.47969 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.47950 * 1 2 3 25 25 H 1.08995 * 109.46969 * 60.00277 * 3 2 1 26 26 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46699 * 299.99959 * 3 2 1 28 28 H 1.08992 * 109.70629 * 174.71708 * 4 2 1 29 29 H 1.09009 * 109.69505 * 295.27677 * 4 2 1 30 30 H 1.09001 * 109.43322 * 168.28069 * 5 4 2 31 31 H 1.09008 * 109.44006 * 288.18790 * 5 4 2 32 32 H 1.08006 * 119.83999 * 359.82171 * 7 6 5 33 33 H 1.08004 * 120.00723 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47439 * 210.00644 * 10 9 8 35 35 H 1.09005 * 109.47015 * 329.99926 * 10 9 8 36 36 H 0.97008 * 120.00169 * 179.97438 * 14 13 11 37 37 H 1.07998 * 119.89144 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4407 0.0000 4 6 2.0468 -0.7335 1.2442 5 6 1.4241 -2.1316 1.2711 6 6 1.5711 -2.7791 -0.0824 7 6 1.4231 -4.1525 -0.1840 8 6 1.5479 -4.7784 -1.4087 9 6 1.8215 -4.0332 -2.5410 10 6 1.9573 -4.7153 -3.8779 11 6 0.6099 -4.7759 -4.5502 12 1 -0.2579 -4.3616 -4.0586 13 6 0.4853 -5.3594 -5.7931 14 7 1.5421 -5.8635 -6.3919 15 14 -1.1847 -5.4340 -6.6268 16 1 -1.3801 -4.2160 -7.4536 17 1 -1.2517 -6.6372 -7.4945 18 1 -2.2502 -5.5078 -5.5950 19 6 1.9711 -2.6650 -2.4458 20 6 1.8482 -2.0312 -1.2131 21 8 2.0111 -0.6837 -1.1581 22 1 -0.3633 0.5057 0.8946 23 1 -0.3633 -1.0276 -0.0093 24 1 -0.3634 0.5219 -0.8853 25 1 1.6838 1.9558 0.8900 26 1 3.1352 1.4368 -0.0005 27 1 1.6838 1.9558 -0.8900 28 1 3.1326 -0.8159 1.1978 29 1 1.7580 -0.1847 2.1407 30 1 1.9301 -2.7397 2.0210 31 1 0.3662 -2.0528 1.5219 32 1 1.2093 -4.7367 0.6989 33 1 1.4311 -5.8496 -1.4822 34 1 2.6507 -4.1535 -4.5037 35 1 2.3367 -5.7268 -3.7329 36 1 1.4544 -6.2744 -7.2662 37 1 2.1843 -2.0840 -3.3309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:57 Heat of formation + Delta-G solvation = -56.691601 kcal Electronic energy + Delta-G solvation = -17738.002308 eV Core-core repulsion = 15057.571356 eV Total energy + Delta-G solvation = -2680.430952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85090 -39.03216 -35.79013 -35.44105 -33.72554 -31.44063 -30.53279 -28.45625 -28.13403 -25.62025 -23.98106 -23.42297 -22.79164 -19.59507 -18.55956 -18.02968 -17.22383 -16.66921 -16.51048 -15.92177 -15.64488 -15.26805 -14.74053 -14.54132 -14.12409 -13.96797 -13.62736 -13.49750 -13.36468 -13.05158 -12.98036 -12.80461 -12.62468 -12.54400 -12.25696 -12.19762 -11.98226 -11.52849 -11.46270 -11.34692 -11.02576 -10.63318 -9.46840 -8.94586 -8.22362 -6.36371 0.51574 0.59284 1.37670 1.39350 1.50917 2.32168 2.39398 2.93033 3.08028 3.68532 3.76308 3.85818 3.94697 4.06926 4.30084 4.35883 4.37819 4.57667 4.62898 4.67121 4.73000 4.82830 4.86099 4.91708 4.96281 5.04233 5.11388 5.21004 5.24134 5.30953 5.35585 5.38296 5.47473 5.61555 5.71134 5.96736 6.05391 6.16681 6.68095 6.75601 7.32020 8.87136 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.005485 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.609136 B = 5103.701264 C = 5402.359829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 C -0.134 4.134 4 C -0.141 4.141 5 C -0.070 4.070 6 C -0.182 4.182 7 C -0.079 4.079 8 C -0.168 4.168 9 C -0.031 4.031 10 C 0.057 3.943 11 C -0.530 4.530 12 H 0.052 0.948 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.265 1.265 19 C -0.178 4.178 20 C 0.131 3.869 21 O -0.333 6.333 22 H 0.102 0.898 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.119 0.881 34 H -0.001 1.001 35 H 0.009 0.991 36 H 0.267 0.733 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 11.822 18.596 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.182 4.182 7 C -0.096 4.096 8 C -0.186 4.186 9 C -0.032 4.032 10 C 0.020 3.980 11 C -0.568 4.568 12 H 0.071 0.929 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.791 3.209 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.197 4.197 20 C 0.087 3.913 21 O -0.248 6.248 22 H 0.121 0.879 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.137 0.863 34 H 0.018 0.982 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.403 11.875 18.315 21.873 hybrid contribution -0.497 -0.512 -1.265 1.452 sum -1.900 11.363 17.050 20.578 Atomic orbital electron populations 1.22416 0.94215 1.02581 1.03770 1.22295 0.94424 0.93440 0.84059 1.21818 1.01959 0.91301 1.04036 1.22258 1.00960 0.95994 0.98571 1.20545 1.02588 0.95731 0.91835 1.20025 1.08423 0.94300 0.95490 1.21139 0.97544 0.93531 0.97416 1.21037 1.04881 1.00138 0.92562 1.20128 0.93701 0.92985 0.96344 1.18104 0.96431 0.94253 0.89191 1.21328 0.94192 1.38337 1.02904 0.92941 1.25943 1.01031 0.94605 0.97743 1.70084 1.31219 1.39625 1.16048 0.85410 0.79074 0.77993 0.78377 1.19779 1.20071 1.18930 1.20421 1.09122 0.94333 0.95835 1.18592 0.96976 0.82819 0.92961 1.85999 1.77265 1.16638 1.44926 0.87922 0.93145 0.92813 0.87370 0.91837 0.92254 0.91385 0.86565 0.88481 0.89243 0.82862 0.86327 0.98236 0.97246 0.92452 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 8.14 71.98 0.59 -3.05 16 2 C 0.09 2.15 1.13 -10.66 -0.01 2.14 16 3 C -0.13 -2.28 8.88 71.98 0.64 -1.64 16 4 C -0.14 -2.56 5.10 30.75 0.16 -2.41 16 5 C -0.07 -1.46 5.21 29.89 0.16 -1.30 16 6 C -0.18 -5.71 5.18 -19.75 -0.10 -5.81 16 7 C -0.08 -2.55 9.67 22.30 0.22 -2.33 16 8 C -0.17 -6.89 9.70 22.25 0.22 -6.68 16 9 C -0.03 -1.51 5.06 -19.92 -0.10 -1.62 16 10 C 0.06 3.25 5.10 29.10 0.15 3.40 16 11 C -0.53 -31.71 9.09 25.60 0.23 -31.48 16 12 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.00 0.29 5.46 84.65 0.46 0.75 16 14 N -0.93 -57.57 13.29 21.44 0.28 -57.29 16 15 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 C -0.18 -8.11 9.59 22.43 0.22 -7.90 16 20 C 0.13 4.96 6.02 22.52 0.14 5.10 16 21 O -0.33 -11.31 9.68 -91.82 -0.89 -12.20 16 22 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.24 5.88 -2.39 -0.01 1.23 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.61 7.00 -2.38 -0.02 1.59 16 32 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 34 H 0.00 -0.04 8.08 -2.39 -0.02 -0.06 16 35 H 0.01 0.55 8.09 -2.38 -0.02 0.53 16 36 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 37 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -70.64 301.56 5.40 -65.23 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.03 Total: 9.52 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 2.95 Total: -52.81 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.89 Total: -12.20 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.64 5.40 -65.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.541 kcal (2) G-P(sol) polarization free energy of solvation -70.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds