Wall clock time and date at job start Mon Mar 30 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38285 * 120.01682 * 2 1 4 4 C 1.38111 * 119.97991 * 180.15339 * 3 2 1 5 5 C 1.38508 * 120.31467 * 359.55276 * 4 3 2 6 6 C 1.38369 * 119.82992 * 0.32322 * 5 4 3 7 7 C 1.37971 * 120.02015 * 179.73246 * 2 1 3 8 8 O 1.35850 * 121.80388 * 179.68781 * 6 5 4 9 9 C 1.42830 * 117.85438 * 17.20631 * 8 6 5 10 10 C 1.53005 * 109.68042 * 191.09645 * 9 8 6 11 11 C 1.52994 * 109.68418 * 70.54264 * 9 8 6 12 12 C 1.53402 * 108.38002 * 310.81461 * 9 8 6 13 13 C 1.50765 * 118.75784 * 180.46976 * 5 4 3 14 14 H 1.08997 * 109.43698 * 77.58704 * 13 5 4 15 15 C 1.50700 * 109.43557 * 317.66664 * 13 5 4 16 16 H 1.07995 * 120.00316 * 324.88473 * 15 13 5 17 17 C 1.37877 * 119.99628 * 144.87686 * 15 13 5 18 18 N 1.31517 * 120.00230 * 5.12560 * 17 15 13 19 19 Si 1.86798 * 119.99958 * 185.12451 * 17 15 13 20 20 H 1.48493 * 109.47517 * 89.99942 * 19 17 15 21 21 H 1.48509 * 109.47178 * 210.00224 * 19 17 15 22 22 H 1.48499 * 109.47052 * 329.99785 * 19 17 15 23 23 H 1.08994 * 109.47258 * 270.26874 * 1 2 3 24 24 H 1.09003 * 109.47364 * 30.27444 * 1 2 3 25 25 H 1.09007 * 109.46878 * 150.27363 * 1 2 3 26 26 H 1.08000 * 120.01290 * 359.89640 * 3 2 1 27 27 H 1.07994 * 119.84073 * 179.83078 * 4 3 2 28 28 H 1.08000 * 119.89131 * 359.96815 * 7 2 1 29 29 H 1.09001 * 109.47243 * 178.91933 * 10 9 8 30 30 H 1.08996 * 109.46962 * 298.92181 * 10 9 8 31 31 H 1.08998 * 109.46952 * 58.91900 * 10 9 8 32 32 H 1.09003 * 109.47252 * 301.07568 * 11 9 8 33 33 H 1.09005 * 109.47596 * 61.07907 * 11 9 8 34 34 H 1.09007 * 109.47083 * 181.08103 * 11 9 8 35 35 H 1.09004 * 109.70007 * 305.01937 * 12 9 8 36 36 H 1.08997 * 109.70361 * 184.42115 * 12 9 8 37 37 H 0.96998 * 119.99908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1974 0.0000 4 6 3.5799 1.1965 -0.0032 5 6 4.2783 0.0004 0.0029 6 6 3.5887 -1.1992 0.0055 7 6 2.1973 -1.1946 0.0056 8 8 4.2329 -2.3953 0.0052 9 6 5.6122 -2.4105 0.3758 10 6 6.2181 -3.7772 0.0502 11 6 5.7465 -2.1302 1.8738 12 6 6.3392 -1.3200 -0.4213 13 6 5.7854 0.0404 0.0100 14 1 6.1373 0.2733 1.0150 15 6 6.2633 1.1017 -0.9473 16 1 5.7208 1.2874 -1.8624 17 6 7.3933 1.8356 -0.6546 18 7 8.1107 1.5428 0.4080 19 14 7.9051 3.2459 -1.7675 20 1 7.2691 4.5029 -1.2980 21 1 9.3823 3.3947 -1.7305 22 1 7.4711 2.9612 -3.1588 23 1 -0.3633 0.0048 1.0276 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6593 2.1330 -0.0017 27 1 4.1179 2.1329 -0.0060 28 1 1.6559 -2.1291 0.0105 29 1 7.2751 -3.7788 0.3165 30 1 5.6992 -4.5493 0.6181 31 1 6.1118 -3.9771 -1.0160 32 1 5.3051 -1.1602 2.1029 33 1 5.2288 -2.9070 2.4367 34 1 6.8012 -2.1237 2.1491 35 1 6.1653 -1.4662 -1.4873 36 1 7.4083 -1.3639 -0.2135 37 1 8.9059 2.0589 0.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260888571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:51 Heat of formation + Delta-G solvation = -38.001613 kcal Electronic energy + Delta-G solvation = -18367.967166 eV Core-core repulsion = 15688.346672 eV Total energy + Delta-G solvation = -2679.620493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15428 -37.39364 -34.58409 -33.00776 -31.90589 -29.67883 -28.90676 -26.92450 -25.75405 -25.18935 -22.01116 -21.58930 -21.07144 -17.93873 -16.57383 -16.22793 -15.60729 -15.03120 -14.51852 -14.18056 -13.76301 -13.47480 -13.21524 -13.05111 -12.54714 -12.38229 -12.22799 -11.89380 -11.66971 -11.62217 -11.41366 -11.20318 -11.00162 -10.87425 -10.64020 -10.48943 -10.22332 -10.07250 -9.78715 -9.15167 -9.01949 -8.48397 -7.82851 -7.24828 -6.11449 -4.14741 2.13360 2.21135 3.25367 3.32790 3.36643 3.93359 4.34890 4.56069 5.14821 5.37435 5.42087 5.47987 5.51198 5.63817 5.69448 5.86499 5.88791 6.00031 6.06639 6.09565 6.15565 6.17879 6.23799 6.39062 6.48556 6.51769 6.66978 6.78615 6.85576 6.93331 7.10469 7.24159 7.33700 7.58492 7.65255 7.75268 7.83500 8.27163 8.34651 8.93314 9.49010 10.96829 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.009742 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.636219 B = 2873.515643 C = 4097.132186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.084 4.084 3 C -0.166 4.166 4 C -0.067 4.067 5 C -0.119 4.119 6 C 0.121 3.879 7 C -0.163 4.163 8 O -0.320 6.320 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.166 4.166 12 C -0.126 4.126 13 C 0.071 3.929 14 H 0.074 0.926 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 -5.289 1.262 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.085 4.085 5 C -0.120 4.120 6 C 0.076 3.924 7 C -0.182 4.182 8 O -0.235 6.235 9 C 0.067 3.933 10 C -0.190 4.190 11 C -0.223 4.223 12 C -0.164 4.164 13 C 0.053 3.947 14 H 0.091 0.909 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.505 -5.424 1.315 9.353 hybrid contribution 0.558 0.974 -0.568 1.258 sum -6.947 -4.450 0.747 8.284 Atomic orbital electron populations 1.20671 0.91922 1.01953 1.01532 1.19406 0.95056 0.92674 1.01259 1.20850 0.94517 0.96676 1.06354 1.21073 0.92737 0.98572 0.96138 1.20756 0.99172 0.91236 1.00871 1.18752 0.90932 0.84875 0.97821 1.20215 0.91248 0.97615 1.09092 1.85866 1.25464 1.28410 1.83806 1.22030 0.79596 0.97034 0.94665 1.21736 1.00347 0.94828 1.02093 1.22318 1.02579 1.02206 0.95210 1.22375 1.00365 0.95191 0.98467 1.17949 0.84624 0.92437 0.99698 0.90868 1.20993 1.10121 1.17652 1.05570 0.92468 1.24986 0.96226 0.97227 0.95265 1.69921 1.16343 1.40088 1.26487 0.86599 0.77645 0.82698 0.81176 1.20512 1.21225 1.19800 0.91900 0.92054 0.92202 0.87161 0.85313 0.86748 0.90837 0.92550 0.92089 0.91458 0.93119 0.91217 0.92595 0.90843 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.01 36.01 0.36 -0.98 16 2 C -0.08 -1.44 5.87 -104.70 -0.61 -2.05 16 3 C -0.17 -3.03 9.70 -39.61 -0.38 -3.41 16 4 C -0.07 -1.43 9.10 -39.53 -0.36 -1.79 16 5 C -0.12 -2.70 4.85 -104.44 -0.51 -3.21 16 6 C 0.12 2.56 6.02 -39.20 -0.24 2.32 16 7 C -0.16 -3.04 9.59 -39.34 -0.38 -3.42 16 8 O -0.32 -6.58 9.67 -19.27 -0.19 -6.77 16 9 C 0.10 1.99 1.13 -90.41 -0.10 1.89 16 10 C -0.13 -2.06 8.88 37.16 0.33 -1.73 16 11 C -0.17 -3.01 8.15 37.15 0.30 -2.71 16 12 C -0.13 -2.80 4.39 -26.48 -0.12 -2.92 16 13 C 0.07 1.74 1.73 -92.85 -0.16 1.58 16 14 H 0.07 1.96 6.24 -51.93 -0.32 1.63 16 15 C -0.51 -13.44 7.01 -34.44 -0.24 -13.69 16 16 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 17 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 18 N -0.89 -24.69 12.84 55.43 0.71 -23.98 16 19 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.13 2.83 7.37 -52.49 -0.39 2.44 16 28 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.35 5.88 -51.93 -0.31 1.05 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -28.04 298.24 -7.83 -35.87 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.63 Total: 3.05 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -2.20 Total: -28.47 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.71 Total: -23.98 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.19 Total: -6.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.04 -7.83 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.127 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds