Wall clock time and date at job start Mon Mar 30 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38285 * 120.01682 * 2 1 4 4 C 1.38111 * 119.97991 * 180.15339 * 3 2 1 5 5 C 1.38508 * 120.31467 * 359.55276 * 4 3 2 6 6 C 1.38369 * 119.82992 * 0.32322 * 5 4 3 7 7 C 1.37971 * 120.02015 * 179.73246 * 2 1 3 8 8 O 1.35850 * 121.80388 * 179.68781 * 6 5 4 9 9 C 1.42830 * 117.85438 * 17.20631 * 8 6 5 10 10 C 1.53005 * 109.68042 * 191.09645 * 9 8 6 11 11 C 1.52994 * 109.68418 * 70.54264 * 9 8 6 12 12 C 1.53402 * 108.38002 * 310.81461 * 9 8 6 13 13 C 1.50765 * 118.75784 * 180.46976 * 5 4 3 14 14 H 1.08997 * 109.43698 * 77.58704 * 13 5 4 15 15 C 1.50700 * 109.43557 * 317.66664 * 13 5 4 16 16 H 1.07995 * 120.00316 * 324.88473 * 15 13 5 17 17 C 1.37877 * 119.99628 * 144.87686 * 15 13 5 18 18 N 1.31517 * 120.00230 * 5.12560 * 17 15 13 19 19 Si 1.86798 * 119.99958 * 185.12451 * 17 15 13 20 20 H 1.48493 * 109.47517 * 89.99942 * 19 17 15 21 21 H 1.48509 * 109.47178 * 210.00224 * 19 17 15 22 22 H 1.48499 * 109.47052 * 329.99785 * 19 17 15 23 23 H 1.08994 * 109.47258 * 270.26874 * 1 2 3 24 24 H 1.09003 * 109.47364 * 30.27444 * 1 2 3 25 25 H 1.09007 * 109.46878 * 150.27363 * 1 2 3 26 26 H 1.08000 * 120.01290 * 359.89640 * 3 2 1 27 27 H 1.07994 * 119.84073 * 179.83078 * 4 3 2 28 28 H 1.08000 * 119.89131 * 359.96815 * 7 2 1 29 29 H 1.09001 * 109.47243 * 178.91933 * 10 9 8 30 30 H 1.08996 * 109.46962 * 298.92181 * 10 9 8 31 31 H 1.08998 * 109.46952 * 58.91900 * 10 9 8 32 32 H 1.09003 * 109.47252 * 301.07568 * 11 9 8 33 33 H 1.09005 * 109.47596 * 61.07907 * 11 9 8 34 34 H 1.09007 * 109.47083 * 181.08103 * 11 9 8 35 35 H 1.09004 * 109.70007 * 305.01937 * 12 9 8 36 36 H 1.08997 * 109.70361 * 184.42115 * 12 9 8 37 37 H 0.96998 * 119.99908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1974 0.0000 4 6 3.5799 1.1965 -0.0032 5 6 4.2783 0.0004 0.0029 6 6 3.5887 -1.1992 0.0055 7 6 2.1973 -1.1946 0.0056 8 8 4.2329 -2.3953 0.0052 9 6 5.6122 -2.4105 0.3758 10 6 6.2181 -3.7772 0.0502 11 6 5.7465 -2.1302 1.8738 12 6 6.3392 -1.3200 -0.4213 13 6 5.7854 0.0404 0.0100 14 1 6.1373 0.2733 1.0150 15 6 6.2633 1.1017 -0.9473 16 1 5.7208 1.2874 -1.8624 17 6 7.3933 1.8356 -0.6546 18 7 8.1107 1.5428 0.4080 19 14 7.9051 3.2459 -1.7675 20 1 7.2691 4.5029 -1.2980 21 1 9.3823 3.3947 -1.7305 22 1 7.4711 2.9612 -3.1588 23 1 -0.3633 0.0048 1.0276 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6593 2.1330 -0.0017 27 1 4.1179 2.1329 -0.0060 28 1 1.6559 -2.1291 0.0105 29 1 7.2751 -3.7788 0.3165 30 1 5.6992 -4.5493 0.6181 31 1 6.1118 -3.9771 -1.0160 32 1 5.3051 -1.1602 2.1029 33 1 5.2288 -2.9070 2.4367 34 1 6.8012 -2.1237 2.1491 35 1 6.1653 -1.4662 -1.4873 36 1 7.4083 -1.3639 -0.2135 37 1 8.9059 2.0589 0.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260888571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:50 Heat of formation + Delta-G solvation = -52.079519 kcal Electronic energy + Delta-G solvation = -18368.577629 eV Core-core repulsion = 15688.346672 eV Total energy + Delta-G solvation = -2680.230957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74387 -38.87846 -36.38370 -34.56614 -33.66302 -31.27367 -30.39935 -28.33809 -27.21162 -27.07448 -23.57480 -23.21186 -22.71536 -19.49893 -18.55370 -17.86689 -17.21168 -16.68876 -16.26392 -15.76790 -15.28351 -15.07704 -14.64539 -14.39228 -14.30514 -13.77048 -13.72212 -13.25768 -13.08358 -12.98576 -12.86534 -12.82648 -12.73855 -12.58859 -12.29346 -12.15684 -11.97741 -11.70960 -11.38724 -11.07802 -10.86271 -10.44516 -9.38729 -8.83934 -8.17057 -6.27055 0.60286 0.65922 1.37221 1.38687 1.48624 2.37732 2.43728 2.99400 3.10292 3.91896 3.97904 4.07190 4.12556 4.15360 4.34500 4.43620 4.54979 4.66217 4.69767 4.74761 4.82869 4.90921 4.93906 4.98847 5.00603 5.07755 5.14810 5.19474 5.32008 5.39275 5.45939 5.55899 5.65680 5.74433 5.81296 6.02654 6.12014 6.32187 6.70028 6.85569 7.38644 8.89985 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.009742 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.636219 B = 2873.515643 C = 4097.132186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.072 4.072 3 C -0.164 4.164 4 C -0.088 4.088 5 C -0.152 4.152 6 C 0.105 3.895 7 C -0.165 4.165 8 O -0.322 6.322 9 C 0.104 3.896 10 C -0.127 4.127 11 C -0.160 4.160 12 C -0.119 4.119 13 C 0.074 3.926 14 H 0.040 0.960 15 C -0.516 4.516 16 H 0.043 0.957 17 C 0.019 3.981 18 N -0.919 5.919 19 Si 0.951 3.049 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.272 1.272 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -6.091 1.076 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.106 4.106 5 C -0.153 4.153 6 C 0.061 3.939 7 C -0.184 4.184 8 O -0.238 6.238 9 C 0.066 3.934 10 C -0.184 4.184 11 C -0.217 4.217 12 C -0.157 4.157 13 C 0.056 3.944 14 H 0.058 0.942 15 C -0.554 4.554 16 H 0.062 0.938 17 C -0.180 4.180 18 N -0.558 5.558 19 Si 0.776 3.224 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.196 1.196 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.126 0.874 28 H 0.157 0.843 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.651 -6.229 1.126 11.542 hybrid contribution 1.124 1.234 -0.497 1.742 sum -8.527 -4.995 0.630 9.902 Atomic orbital electron populations 1.20766 0.88086 1.03699 1.03246 1.19953 0.97661 0.91447 0.98154 1.21150 0.93164 0.98724 1.05130 1.21058 0.94430 0.97375 0.97731 1.20630 0.98091 0.92742 1.03857 1.18999 0.92122 0.84401 0.98412 1.20603 0.90210 0.99401 1.08173 1.85863 1.25785 1.28136 1.84004 1.22139 0.78904 0.97816 0.94500 1.21743 1.01117 0.92900 1.02678 1.22252 1.02924 1.01532 0.94987 1.22181 0.99667 0.95854 0.98008 1.17748 0.86495 0.92913 0.97276 0.94231 1.21187 1.10099 1.18659 1.05474 0.93846 1.25677 0.96248 0.99444 0.96626 1.70028 1.16756 1.41145 1.27899 0.85664 0.77394 0.79937 0.79376 1.19857 1.20645 1.19639 0.90000 0.90367 0.90525 0.84289 0.87384 0.84284 0.89514 0.90181 0.91901 0.94219 0.90498 0.90865 0.94126 0.92463 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.01 71.24 0.71 -1.42 16 2 C -0.07 -2.27 5.87 -19.91 -0.12 -2.38 16 3 C -0.16 -5.74 9.70 22.25 0.22 -5.52 16 4 C -0.09 -3.84 9.10 22.30 0.20 -3.64 16 5 C -0.15 -7.13 4.85 -19.75 -0.10 -7.23 16 6 C 0.11 4.44 6.02 22.52 0.14 4.57 16 7 C -0.17 -5.81 9.59 22.42 0.22 -5.60 16 8 O -0.32 -13.05 9.67 -91.86 -0.89 -13.93 16 9 C 0.10 3.96 1.13 -10.66 -0.01 3.95 16 10 C -0.13 -3.75 8.88 71.98 0.64 -3.11 16 11 C -0.16 -5.81 8.15 71.98 0.59 -5.23 16 12 C -0.12 -5.53 4.39 30.76 0.14 -5.39 16 13 C 0.07 3.82 1.73 -12.24 -0.02 3.80 16 14 H 0.04 2.28 6.24 -2.39 -0.01 2.26 16 15 C -0.52 -28.83 7.01 25.60 0.18 -28.65 16 16 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.07 5.45 84.65 0.46 1.53 16 18 N -0.92 -52.99 12.84 21.45 0.28 -52.72 16 19 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 26 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 27 H 0.11 5.03 7.37 -2.91 -0.02 5.01 16 28 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.65 5.88 -2.39 -0.01 1.63 16 33 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.04 1.95 8.10 -2.38 -0.02 1.93 16 36 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -62.90 298.24 5.69 -57.22 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.04 Total: 17.90 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 3.24 Total: -54.31 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.72 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.89 Total: -13.93 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -62.90 5.69 -57.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.136 kcal (2) G-P(sol) polarization free energy of solvation -62.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds