Wall clock time and date at job start Mon Mar 30 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38291 * 120.02106 * 2 1 4 4 C 1.38108 * 119.98749 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.31296 * 359.96866 * 4 3 2 6 6 C 1.38369 * 119.82999 * 359.87203 * 5 4 3 7 7 C 1.37974 * 120.02405 * 179.97438 * 2 1 3 8 8 O 1.35850 * 121.80463 * 180.47961 * 6 5 4 9 9 C 1.42830 * 117.84844 * 342.72805 * 8 6 5 10 10 C 1.53003 * 109.68584 * 289.49447 * 9 8 6 11 11 C 1.53004 * 109.71354 * 168.95933 * 9 8 6 12 12 C 1.53403 * 108.37578 * 49.21902 * 9 8 6 13 13 C 1.50772 * 118.76104 * 179.84631 * 5 4 3 14 14 H 1.09000 * 109.39942 * 282.26977 * 13 5 4 15 15 C 1.50697 * 109.43390 * 42.16546 * 13 5 4 16 16 H 1.07995 * 120.00624 * 35.28284 * 15 13 5 17 17 C 1.37885 * 119.99580 * 215.28449 * 15 13 5 18 18 N 1.31513 * 120.00051 * 5.66949 * 17 15 13 19 19 Si 1.86798 * 119.99808 * 185.66514 * 17 15 13 20 20 H 1.48507 * 109.46877 * 60.00388 * 19 17 15 21 21 H 1.48498 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47282 * 300.00257 * 19 17 15 23 23 H 1.08999 * 109.46946 * 270.02032 * 1 2 3 24 24 H 1.08996 * 109.46968 * 30.02334 * 1 2 3 25 25 H 1.09002 * 109.46374 * 150.02374 * 1 2 3 26 26 H 1.08004 * 120.00514 * 0.09280 * 3 2 1 27 27 H 1.07997 * 119.84299 * 180.02562 * 4 3 2 28 28 H 1.07998 * 119.88875 * 0.05209 * 7 2 1 29 29 H 1.08994 * 109.47171 * 178.91328 * 10 9 8 30 30 H 1.09000 * 109.46317 * 58.91791 * 10 9 8 31 31 H 1.08999 * 109.47569 * 298.92005 * 10 9 8 32 32 H 1.09000 * 109.47445 * 180.54078 * 11 9 8 33 33 H 1.08999 * 109.47010 * 300.54723 * 11 9 8 34 34 H 1.09004 * 109.47172 * 60.53995 * 11 9 8 35 35 H 1.09008 * 109.69454 * 54.99499 * 12 9 8 36 36 H 1.08997 * 109.69948 * 175.57838 * 12 9 8 37 37 H 0.97001 * 119.99681 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1974 0.0000 4 6 3.5800 1.1966 -0.0005 5 6 4.2783 0.0005 -0.0004 6 6 3.5888 -1.1992 0.0029 7 6 2.1974 -1.1946 0.0005 8 8 4.2329 -2.3952 0.0128 9 6 5.6129 -2.4129 -0.3552 10 6 5.7498 -2.1422 -1.8549 11 6 6.2188 -3.7774 -0.0206 12 6 6.3385 -1.3172 0.4360 13 6 5.7855 0.0404 -0.0046 14 1 6.1389 0.2667 -1.0105 15 6 6.2614 1.1083 0.9463 16 1 5.7185 1.2986 1.8603 17 6 7.3902 1.8424 0.6494 18 7 7.9873 1.6895 -0.5123 19 14 8.0710 3.0543 1.8973 20 1 8.4307 2.3316 3.1438 21 1 9.2806 3.7114 1.3401 22 1 7.0435 4.0827 2.2002 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6593 2.1330 0.0015 27 1 4.1179 2.1330 -0.0001 28 1 1.6560 -2.1291 0.0001 29 1 6.8049 -2.1374 -2.1283 30 1 5.3089 -1.1737 -2.0909 31 1 5.2332 -2.9225 -2.4137 32 1 7.2739 -3.7834 -0.2941 33 1 6.1194 -3.9668 1.0482 34 1 5.6947 -4.5542 -0.5775 35 1 6.1628 -1.4568 1.5028 36 1 7.4080 -1.3626 0.2304 37 1 8.7811 2.2063 -0.7213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260888574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:52 Heat of formation + Delta-G solvation = -37.725478 kcal Electronic energy + Delta-G solvation = -18364.867157 eV Core-core repulsion = 15685.258638 eV Total energy + Delta-G solvation = -2679.608519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15492 -37.39020 -34.58567 -33.01546 -31.89951 -29.68202 -28.90443 -26.93393 -25.75885 -25.18242 -22.01248 -21.58890 -21.06959 -17.94555 -16.56427 -16.23038 -15.60980 -15.01718 -14.53886 -14.18674 -13.75387 -13.51477 -13.16453 -13.04248 -12.54272 -12.40025 -12.23160 -11.88817 -11.66381 -11.62911 -11.42425 -11.23152 -10.97883 -10.89268 -10.63579 -10.50008 -10.22563 -10.09223 -9.78808 -9.16902 -8.93281 -8.55638 -7.81745 -7.24283 -6.11103 -4.14067 2.14413 2.22089 3.27008 3.32047 3.35425 3.92828 4.34934 4.56958 5.14359 5.36867 5.42112 5.47275 5.51577 5.62460 5.69811 5.87258 5.89813 5.98959 6.06364 6.09800 6.14788 6.17544 6.23146 6.38216 6.47784 6.51194 6.66360 6.77641 6.85385 6.92439 7.10288 7.23038 7.34399 7.59883 7.66063 7.75151 7.83291 8.27148 8.34862 8.93927 9.48932 10.96911 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.009602 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.423558 B = 2915.322925 C = 4084.043905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.084 4.084 3 C -0.165 4.165 4 C -0.066 4.066 5 C -0.118 4.118 6 C 0.120 3.880 7 C -0.163 4.163 8 O -0.320 6.320 9 C 0.105 3.895 10 C -0.166 4.166 11 C -0.133 4.133 12 C -0.127 4.127 13 C 0.068 3.932 14 H 0.078 0.922 15 C -0.506 4.506 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 -5.620 -0.985 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.084 4.084 5 C -0.119 4.119 6 C 0.075 3.925 7 C -0.182 4.182 8 O -0.235 6.235 9 C 0.067 3.933 10 C -0.224 4.224 11 C -0.190 4.190 12 C -0.166 4.166 13 C 0.050 3.950 14 H 0.096 0.904 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.136 4.136 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.213 -5.741 -1.053 9.279 hybrid contribution 0.646 0.859 0.672 1.268 sum -6.567 -4.881 -0.381 8.192 Atomic orbital electron populations 1.20668 0.91931 1.01905 1.01562 1.19406 0.95050 0.92677 1.01309 1.20853 0.94529 0.96666 1.06329 1.21081 0.92717 0.98614 0.96018 1.20743 0.99134 0.91210 1.00820 1.18755 0.90938 0.84855 0.97959 1.20212 0.91241 0.97604 1.09103 1.85866 1.25333 1.28523 1.83802 1.22012 0.79635 0.96962 0.94662 1.22323 1.02551 1.02302 0.95186 1.21739 1.00319 0.94869 1.02094 1.22397 1.00141 0.95367 0.98647 1.17983 0.84782 0.92243 0.99975 0.90408 1.20945 1.10265 1.17675 1.05535 0.92558 1.24981 0.96857 0.96658 0.95105 1.69891 1.20459 1.41768 1.20808 0.86661 0.78506 0.81240 0.81690 1.20166 1.21249 1.20112 0.91895 0.92062 0.92220 0.87171 0.85249 0.86765 0.91266 0.91375 0.93082 0.90864 0.92083 0.92508 0.92499 0.91139 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.01 36.01 0.36 -0.98 16 2 C -0.08 -1.45 5.87 -104.70 -0.61 -2.07 16 3 C -0.17 -3.04 9.70 -39.61 -0.38 -3.43 16 4 C -0.07 -1.42 9.10 -39.53 -0.36 -1.78 16 5 C -0.12 -2.68 4.85 -104.44 -0.51 -3.19 16 6 C 0.12 2.53 6.02 -39.20 -0.24 2.30 16 7 C -0.16 -3.05 9.59 -39.34 -0.38 -3.43 16 8 O -0.32 -6.56 9.68 -19.27 -0.19 -6.75 16 9 C 0.10 1.99 1.13 -90.41 -0.10 1.89 16 10 C -0.17 -3.01 8.15 37.16 0.30 -2.71 16 11 C -0.13 -2.05 8.88 37.16 0.33 -1.72 16 12 C -0.13 -2.82 4.39 -26.49 -0.12 -2.93 16 13 C 0.07 1.67 1.81 -92.86 -0.17 1.50 16 14 H 0.08 2.09 6.09 -51.93 -0.32 1.77 16 15 C -0.51 -13.47 7.00 -34.44 -0.24 -13.71 16 16 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 17 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -24.75 12.76 55.43 0.71 -24.04 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.13 2.89 7.36 -52.49 -0.39 2.50 16 28 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.37 5.88 -51.93 -0.31 1.07 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.30 8.10 -51.92 -0.42 0.88 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -28.04 298.09 -7.84 -35.88 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.62 Total: 3.20 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.21 Total: -28.58 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.71 Total: -24.04 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.19 Total: -6.75 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.04 -7.84 -35.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.849 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds