Wall clock time and date at job start Mon Mar 30 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38291 * 120.02106 * 2 1 4 4 C 1.38108 * 119.98749 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.31296 * 359.96866 * 4 3 2 6 6 C 1.38369 * 119.82999 * 359.87203 * 5 4 3 7 7 C 1.37974 * 120.02405 * 179.97438 * 2 1 3 8 8 O 1.35850 * 121.80463 * 180.47961 * 6 5 4 9 9 C 1.42830 * 117.84844 * 342.72805 * 8 6 5 10 10 C 1.53003 * 109.68584 * 289.49447 * 9 8 6 11 11 C 1.53004 * 109.71354 * 168.95933 * 9 8 6 12 12 C 1.53403 * 108.37578 * 49.21902 * 9 8 6 13 13 C 1.50772 * 118.76104 * 179.84631 * 5 4 3 14 14 H 1.09000 * 109.39942 * 282.26977 * 13 5 4 15 15 C 1.50697 * 109.43390 * 42.16546 * 13 5 4 16 16 H 1.07995 * 120.00624 * 35.28284 * 15 13 5 17 17 C 1.37885 * 119.99580 * 215.28449 * 15 13 5 18 18 N 1.31513 * 120.00051 * 5.66949 * 17 15 13 19 19 Si 1.86798 * 119.99808 * 185.66514 * 17 15 13 20 20 H 1.48507 * 109.46877 * 60.00388 * 19 17 15 21 21 H 1.48498 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47282 * 300.00257 * 19 17 15 23 23 H 1.08999 * 109.46946 * 270.02032 * 1 2 3 24 24 H 1.08996 * 109.46968 * 30.02334 * 1 2 3 25 25 H 1.09002 * 109.46374 * 150.02374 * 1 2 3 26 26 H 1.08004 * 120.00514 * 0.09280 * 3 2 1 27 27 H 1.07997 * 119.84299 * 180.02562 * 4 3 2 28 28 H 1.07998 * 119.88875 * 0.05209 * 7 2 1 29 29 H 1.08994 * 109.47171 * 178.91328 * 10 9 8 30 30 H 1.09000 * 109.46317 * 58.91791 * 10 9 8 31 31 H 1.08999 * 109.47569 * 298.92005 * 10 9 8 32 32 H 1.09000 * 109.47445 * 180.54078 * 11 9 8 33 33 H 1.08999 * 109.47010 * 300.54723 * 11 9 8 34 34 H 1.09004 * 109.47172 * 60.53995 * 11 9 8 35 35 H 1.09008 * 109.69454 * 54.99499 * 12 9 8 36 36 H 1.08997 * 109.69948 * 175.57838 * 12 9 8 37 37 H 0.97001 * 119.99681 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1974 0.0000 4 6 3.5800 1.1966 -0.0005 5 6 4.2783 0.0005 -0.0004 6 6 3.5888 -1.1992 0.0029 7 6 2.1974 -1.1946 0.0005 8 8 4.2329 -2.3952 0.0128 9 6 5.6129 -2.4129 -0.3552 10 6 5.7498 -2.1422 -1.8549 11 6 6.2188 -3.7774 -0.0206 12 6 6.3385 -1.3172 0.4360 13 6 5.7855 0.0404 -0.0046 14 1 6.1389 0.2667 -1.0105 15 6 6.2614 1.1083 0.9463 16 1 5.7185 1.2986 1.8603 17 6 7.3902 1.8424 0.6494 18 7 7.9873 1.6895 -0.5123 19 14 8.0710 3.0543 1.8973 20 1 8.4307 2.3316 3.1438 21 1 9.2806 3.7114 1.3401 22 1 7.0435 4.0827 2.2002 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6593 2.1330 0.0015 27 1 4.1179 2.1330 -0.0001 28 1 1.6560 -2.1291 0.0001 29 1 6.8049 -2.1374 -2.1283 30 1 5.3089 -1.1737 -2.0909 31 1 5.2332 -2.9225 -2.4137 32 1 7.2739 -3.7834 -0.2941 33 1 6.1194 -3.9668 1.0482 34 1 5.6947 -4.5542 -0.5775 35 1 6.1628 -1.4568 1.5028 36 1 7.4080 -1.3626 0.2304 37 1 8.7811 2.2063 -0.7213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260888574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:52 Heat of formation + Delta-G solvation = -51.808156 kcal Electronic energy + Delta-G solvation = -18365.477828 eV Core-core repulsion = 15685.258638 eV Total energy + Delta-G solvation = -2680.219190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74441 -38.87871 -36.38314 -34.57285 -33.65897 -31.28043 -30.39981 -28.33878 -27.20383 -27.07823 -23.57936 -23.21295 -22.71527 -19.50492 -18.54387 -17.86421 -17.21756 -16.67919 -16.28021 -15.77143 -15.27714 -15.08732 -14.64526 -14.40846 -14.26088 -13.79213 -13.71461 -13.23935 -13.10447 -12.99557 -12.85319 -12.83551 -12.74733 -12.59194 -12.29494 -12.16357 -11.97688 -11.71969 -11.38205 -11.08708 -10.76274 -10.53484 -9.38607 -8.83953 -8.16644 -6.26389 0.60560 0.65971 1.38135 1.39058 1.47161 2.37660 2.43522 2.99363 3.10434 3.91402 3.97624 4.06695 4.12438 4.15383 4.34479 4.43052 4.54494 4.66254 4.69576 4.74697 4.82893 4.90984 4.93488 4.97868 5.00121 5.07919 5.14750 5.19338 5.31910 5.39308 5.44406 5.57234 5.66090 5.73926 5.81265 6.02638 6.11893 6.32627 6.69955 6.86410 7.38573 8.89998 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.009602 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.423558 B = 2915.322925 C = 4084.043905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.072 4.072 3 C -0.164 4.164 4 C -0.088 4.088 5 C -0.151 4.151 6 C 0.105 3.895 7 C -0.165 4.165 8 O -0.322 6.322 9 C 0.104 3.896 10 C -0.160 4.160 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.071 3.929 14 H 0.044 0.956 15 C -0.517 4.517 16 H 0.043 0.957 17 C 0.020 3.980 18 N -0.921 5.921 19 Si 0.950 3.050 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.271 1.271 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -6.616 -0.675 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.106 4.106 5 C -0.152 4.152 6 C 0.060 3.940 7 C -0.184 4.184 8 O -0.237 6.237 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.184 4.184 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.062 0.938 15 C -0.555 4.555 16 H 0.061 0.939 17 C -0.179 4.179 18 N -0.560 5.560 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.196 1.196 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.156 0.844 27 H 0.124 0.876 28 H 0.157 0.843 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.240 -6.740 -0.738 11.461 hybrid contribution 1.170 1.183 0.559 1.755 sum -8.071 -5.557 -0.179 9.800 Atomic orbital electron populations 1.20763 0.88080 1.03764 1.03176 1.19951 0.97662 0.91434 0.98207 1.21145 0.93159 0.98721 1.05161 1.21046 0.94419 0.97371 0.97748 1.20626 0.98124 0.92680 1.03744 1.18993 0.92118 0.84387 0.98481 1.20605 0.90222 0.99385 1.08143 1.85864 1.25713 1.28187 1.83980 1.22133 0.78911 0.97784 0.94494 1.22259 1.02945 1.01562 0.94997 1.21747 1.01139 0.92888 1.02668 1.22214 0.99594 0.95876 0.98240 1.17790 0.86597 0.92818 0.97567 0.93805 1.21155 1.10353 1.18572 1.05424 0.93863 1.25670 0.97114 0.98378 0.96718 1.70007 1.20865 1.42849 1.22247 0.85731 0.77960 0.79239 0.79513 1.19781 1.20614 1.19640 0.90188 0.90306 0.90401 0.84374 0.87564 0.84251 0.90821 0.94252 0.90493 0.89440 0.91865 0.90195 0.93896 0.92487 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.07 -2.29 5.87 -19.91 -0.12 -2.41 16 3 C -0.16 -5.81 9.70 22.25 0.22 -5.60 16 4 C -0.09 -3.88 9.10 22.30 0.20 -3.68 16 5 C -0.15 -7.10 4.85 -19.75 -0.10 -7.19 16 6 C 0.10 4.42 6.02 22.52 0.14 4.56 16 7 C -0.17 -5.82 9.59 22.42 0.22 -5.60 16 8 O -0.32 -12.98 9.68 -91.86 -0.89 -13.87 16 9 C 0.10 3.95 1.13 -10.66 -0.01 3.93 16 10 C -0.16 -5.81 8.15 71.98 0.59 -5.23 16 11 C -0.13 -3.69 8.88 71.98 0.64 -3.05 16 12 C -0.12 -5.57 4.39 30.75 0.14 -5.43 16 13 C 0.07 3.64 1.81 -12.24 -0.02 3.62 16 14 H 0.04 2.53 6.09 -2.39 -0.01 2.51 16 15 C -0.52 -28.88 7.00 25.60 0.18 -28.70 16 16 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 17 C 0.02 1.13 5.45 84.66 0.46 1.59 16 18 N -0.92 -53.21 12.76 21.45 0.27 -52.93 16 19 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 26 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 27 H 0.11 5.06 7.36 -2.91 -0.02 5.04 16 28 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.04 1.64 5.88 -2.39 -0.01 1.62 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 2.03 8.10 -2.38 -0.02 2.01 16 36 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -62.96 298.09 5.69 -57.28 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 1.04 Total: 18.33 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 3.24 Total: -54.63 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.27 Total: -52.93 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.89 Total: -13.87 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -62.96 5.69 -57.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.468 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds