Wall clock time and date at job start Mon Mar 30 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37874 * 119.68427 * 2 1 4 4 C 1.38724 * 119.71033 * 179.97438 * 3 2 1 5 5 O 1.35908 * 120.17236 * 180.02562 * 4 3 2 6 6 C 1.38463 * 119.65355 * 0.10616 * 4 3 2 7 7 C 1.50699 * 119.74716 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47319 * 89.99627 * 7 6 4 9 9 H 1.07995 * 120.00061 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99425 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00329 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99695 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47473 * 89.99315 * 12 10 8 14 14 H 1.48504 * 109.47375 * 209.99907 * 12 10 8 15 15 H 1.48506 * 109.46817 * 329.99939 * 12 10 8 16 16 C 1.38786 * 120.50311 * 0.02562 * 6 4 3 17 17 C 1.37759 * 119.73939 * 359.82062 * 16 6 4 18 18 C 1.50652 * 122.53828 * 180.30865 * 17 16 6 19 19 C 1.52731 * 110.59467 * 342.45054 * 18 17 16 20 20 C 1.53325 * 108.37546 * 51.09148 * 19 18 17 21 21 C 1.50640 * 117.69747 * 179.76079 * 16 6 4 22 22 H 1.08998 * 109.47242 * 269.98269 * 1 2 3 23 23 H 1.09001 * 109.47018 * 29.98641 * 1 2 3 24 24 H 1.09002 * 109.47019 * 149.97695 * 1 2 3 25 25 H 1.08001 * 120.14563 * 359.95002 * 3 2 1 26 26 H 0.96701 * 113.99722 * 90.00239 * 5 4 3 27 27 H 1.09009 * 109.46528 * 209.99530 * 7 6 4 28 28 H 1.08997 * 109.47317 * 329.98790 * 7 6 4 29 29 H 0.97006 * 119.99703 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.25052 * 222.16197 * 18 17 16 31 31 H 1.08997 * 109.25054 * 102.73742 * 18 17 16 32 32 H 1.09008 * 109.67627 * 291.37355 * 19 18 17 33 33 H 1.08999 * 109.68515 * 170.81487 * 19 18 17 34 34 H 1.08998 * 109.68293 * 170.32448 * 20 19 18 35 35 H 1.08996 * 109.71752 * 49.78418 * 20 19 18 36 36 H 1.08999 * 109.25698 * 42.22585 * 21 16 6 37 37 H 1.08997 * 109.25381 * 282.80031 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.1978 0.0000 4 6 3.5770 1.1984 0.0005 5 8 4.2596 2.3737 0.0011 6 6 4.2626 -0.0045 -0.0012 7 6 5.7696 -0.0063 -0.0012 8 6 6.2720 -0.0088 1.4196 9 1 5.5703 -0.0087 2.2405 10 6 7.6276 -0.0113 1.6714 11 7 8.4821 -0.0120 0.6717 12 14 8.2504 -0.0137 3.4325 13 1 8.4130 -1.4144 3.8983 14 1 9.5598 0.6841 3.4955 15 1 7.2734 0.6874 4.3039 16 6 3.5725 -1.2087 -0.0039 17 6 2.1950 -1.2068 -0.0012 18 6 1.3829 -2.4758 0.0028 19 6 2.2407 -3.6639 -0.4276 20 6 3.5210 -3.6666 0.4161 21 6 4.3816 -2.4793 -0.0112 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6470 2.1315 -0.0008 26 1 4.4568 2.7136 0.8847 27 1 6.1318 -0.8962 -0.5162 28 1 6.1340 0.8838 -0.5139 29 1 9.4359 -0.0141 0.8490 30 1 0.5454 -2.3687 -0.6865 31 1 1.0001 -2.6542 1.0076 32 1 2.4967 -3.5686 -1.4829 33 1 1.6917 -4.5913 -0.2647 34 1 4.0677 -4.5949 0.2507 35 1 3.2659 -3.5740 1.4718 36 1 5.2194 -2.3760 0.6784 37 1 4.7641 -2.6561 -1.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:09 Heat of formation + Delta-G solvation = -54.025408 kcal Electronic energy + Delta-G solvation = -18117.702342 eV Core-core repulsion = 15437.387005 eV Total energy + Delta-G solvation = -2680.315337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90349 -37.16065 -34.92964 -34.06421 -32.31188 -29.44534 -28.85948 -28.65445 -25.33241 -23.17022 -22.49896 -22.21103 -19.37139 -19.11644 -16.88284 -16.27481 -16.00157 -14.99956 -14.82735 -14.33291 -13.73775 -13.67970 -13.29356 -13.10065 -12.74828 -12.41939 -12.34593 -12.01182 -11.89913 -11.61507 -11.36168 -11.03809 -10.80147 -10.55520 -10.47260 -10.39653 -10.31261 -10.07786 -9.77036 -9.42784 -9.17229 -8.41205 -7.78626 -7.46933 -6.03580 -4.07938 1.92886 2.04240 3.28209 3.35230 3.38017 4.19877 4.44435 4.97166 5.05226 5.09919 5.19379 5.30379 5.39749 5.53607 5.60721 5.69979 5.76357 5.80523 5.88877 5.94680 6.02873 6.12831 6.18612 6.22920 6.32596 6.45910 6.59084 6.69915 6.76706 6.90340 7.03893 7.16243 7.28954 7.54278 7.66931 7.87224 7.94001 8.32484 8.48391 8.97680 9.55390 11.05774 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.008050 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.080768 B = 3477.300584 C = 4248.796089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.151 4.151 4 C 0.097 3.903 5 O -0.495 6.495 6 C -0.065 4.065 7 C 0.050 3.950 8 C -0.509 4.509 9 H 0.053 0.947 10 C 0.061 3.939 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.060 4.060 17 C -0.093 4.093 18 C -0.073 4.073 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.081 4.081 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.386 0.614 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 -3.789 -0.609 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.170 4.170 4 C 0.052 3.948 5 O -0.304 6.304 6 C -0.066 4.066 7 C 0.014 3.986 8 C -0.547 4.547 9 H 0.072 0.928 10 C -0.141 4.141 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.060 4.060 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.118 4.118 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.241 0.759 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.160 -3.836 -1.266 13.766 hybrid contribution 0.530 0.281 1.507 1.622 sum -12.630 -3.555 0.241 13.123 Atomic orbital electron populations 1.20757 0.92075 1.02048 1.01563 1.19447 0.95121 0.92310 1.03624 1.21040 0.93609 0.97408 1.04945 1.18201 0.89057 0.85594 1.01912 1.84710 1.76462 1.35987 1.33238 1.21019 0.99646 0.90986 0.94949 1.18283 0.84019 0.98701 0.97643 1.20970 0.91241 1.51164 0.91343 0.92838 1.24986 0.96914 0.95272 0.96934 1.69961 1.02130 1.50276 1.30582 0.86604 0.78278 0.78170 0.85030 1.20629 1.21177 1.19920 1.19355 0.91904 0.94820 0.99947 1.19328 0.92918 0.93849 1.03217 1.20423 0.97234 0.92208 1.01153 1.21558 0.96672 0.97231 1.00195 1.21556 0.95993 0.98243 0.99738 1.20495 0.98204 0.90589 1.02476 0.91931 0.92331 0.91688 0.86713 0.75902 0.95115 0.94702 0.92863 0.91303 0.91424 0.91887 0.92234 0.92006 0.91971 0.88492 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.52 36.01 0.34 -0.99 16 2 C -0.10 -1.73 5.88 -104.50 -0.61 -2.35 16 3 C -0.15 -2.72 9.63 -39.54 -0.38 -3.11 16 4 C 0.10 2.03 6.67 -39.32 -0.26 1.77 16 5 O -0.49 -10.17 12.53 -19.45 -0.24 -10.41 16 6 C -0.07 -1.48 5.09 -104.34 -0.53 -2.01 16 7 C 0.05 1.31 4.19 -29.04 -0.12 1.18 16 8 C -0.51 -13.93 8.53 -34.44 -0.29 -14.22 16 9 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C -0.06 -1.20 5.74 -104.62 -0.60 -1.80 16 17 C -0.09 -1.61 5.74 -104.57 -0.60 -2.21 16 18 C -0.07 -0.99 4.97 -28.04 -0.14 -1.13 16 19 C -0.12 -1.54 5.98 -26.70 -0.16 -1.70 16 20 C -0.12 -1.74 5.98 -26.70 -0.16 -1.90 16 21 C -0.08 -1.50 4.44 -28.05 -0.12 -1.63 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.06 0.71 5.93 -51.93 -0.31 0.40 16 25 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.39 6.62 9.06 45.56 0.41 7.03 16 27 H 0.03 0.83 6.70 -51.92 -0.35 0.48 16 28 H 0.03 0.99 7.51 -51.93 -0.39 0.60 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.07 0.82 6.27 -51.93 -0.33 0.49 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.83 8.10 -51.92 -0.42 0.41 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.10 2.07 6.71 -51.93 -0.35 1.72 16 37 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -30.37 295.71 -8.46 -38.83 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.64 Total: 4.82 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.74 Total: -28.50 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.24 Total: -10.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.37 -8.46 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.198 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds