Wall clock time and date at job start Mon Mar 30 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37874 * 119.68427 * 2 1 4 4 C 1.38724 * 119.71033 * 179.97438 * 3 2 1 5 5 O 1.35908 * 120.17236 * 180.02562 * 4 3 2 6 6 C 1.38463 * 119.65355 * 0.10616 * 4 3 2 7 7 C 1.50699 * 119.74716 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47319 * 89.99627 * 7 6 4 9 9 H 1.07995 * 120.00061 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99425 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00329 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99695 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47473 * 89.99315 * 12 10 8 14 14 H 1.48504 * 109.47375 * 209.99907 * 12 10 8 15 15 H 1.48506 * 109.46817 * 329.99939 * 12 10 8 16 16 C 1.38786 * 120.50311 * 0.02562 * 6 4 3 17 17 C 1.37759 * 119.73939 * 359.82062 * 16 6 4 18 18 C 1.50652 * 122.53828 * 180.30865 * 17 16 6 19 19 C 1.52731 * 110.59467 * 342.45054 * 18 17 16 20 20 C 1.53325 * 108.37546 * 51.09148 * 19 18 17 21 21 C 1.50640 * 117.69747 * 179.76079 * 16 6 4 22 22 H 1.08998 * 109.47242 * 269.98269 * 1 2 3 23 23 H 1.09001 * 109.47018 * 29.98641 * 1 2 3 24 24 H 1.09002 * 109.47019 * 149.97695 * 1 2 3 25 25 H 1.08001 * 120.14563 * 359.95002 * 3 2 1 26 26 H 0.96701 * 113.99722 * 90.00239 * 5 4 3 27 27 H 1.09009 * 109.46528 * 209.99530 * 7 6 4 28 28 H 1.08997 * 109.47317 * 329.98790 * 7 6 4 29 29 H 0.97006 * 119.99703 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.25052 * 222.16197 * 18 17 16 31 31 H 1.08997 * 109.25054 * 102.73742 * 18 17 16 32 32 H 1.09008 * 109.67627 * 291.37355 * 19 18 17 33 33 H 1.08999 * 109.68515 * 170.81487 * 19 18 17 34 34 H 1.08998 * 109.68293 * 170.32448 * 20 19 18 35 35 H 1.08996 * 109.71752 * 49.78418 * 20 19 18 36 36 H 1.08999 * 109.25698 * 42.22585 * 21 16 6 37 37 H 1.08997 * 109.25381 * 282.80031 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.1978 0.0000 4 6 3.5770 1.1984 0.0005 5 8 4.2596 2.3737 0.0011 6 6 4.2626 -0.0045 -0.0012 7 6 5.7696 -0.0063 -0.0012 8 6 6.2720 -0.0088 1.4196 9 1 5.5703 -0.0087 2.2405 10 6 7.6276 -0.0113 1.6714 11 7 8.4821 -0.0120 0.6717 12 14 8.2504 -0.0137 3.4325 13 1 8.4130 -1.4144 3.8983 14 1 9.5598 0.6841 3.4955 15 1 7.2734 0.6874 4.3039 16 6 3.5725 -1.2087 -0.0039 17 6 2.1950 -1.2068 -0.0012 18 6 1.3829 -2.4758 0.0028 19 6 2.2407 -3.6639 -0.4276 20 6 3.5210 -3.6666 0.4161 21 6 4.3816 -2.4793 -0.0112 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6470 2.1315 -0.0008 26 1 4.4568 2.7136 0.8847 27 1 6.1318 -0.8962 -0.5162 28 1 6.1340 0.8838 -0.5139 29 1 9.4359 -0.0141 0.8490 30 1 0.5454 -2.3687 -0.6865 31 1 1.0001 -2.6542 1.0076 32 1 2.4967 -3.5686 -1.4829 33 1 1.6917 -4.5913 -0.2647 34 1 4.0677 -4.5949 0.2507 35 1 3.2659 -3.5740 1.4718 36 1 5.2194 -2.3760 0.6784 37 1 4.7641 -2.6561 -1.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:08 Heat of formation + Delta-G solvation = -72.231743 kcal Electronic energy + Delta-G solvation = -18118.491828 eV Core-core repulsion = 15437.387005 eV Total energy + Delta-G solvation = -2681.104823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34036 -38.62496 -36.28952 -35.80461 -34.16512 -30.86209 -30.32830 -30.12202 -27.03626 -24.45894 -24.34270 -23.52985 -20.89846 -20.41555 -18.62347 -18.23476 -17.43339 -16.70608 -16.26949 -15.97358 -15.05060 -14.88663 -14.73170 -14.46822 -14.12139 -14.05680 -13.86276 -13.33611 -13.24452 -13.13846 -12.96366 -12.71524 -12.46732 -12.18172 -12.02944 -11.90732 -11.65617 -11.51826 -11.39329 -11.13109 -10.78448 -10.59726 -9.26524 -9.01154 -8.18842 -6.33043 0.45868 0.55377 1.37258 1.38036 1.49196 2.37387 2.76499 3.10617 3.52531 3.85204 3.87739 4.10319 4.17047 4.32476 4.33777 4.40833 4.58579 4.62113 4.73013 4.80982 4.92038 5.00322 5.02430 5.09110 5.11857 5.18535 5.26023 5.31390 5.33801 5.44955 5.47638 5.51231 5.65302 5.75172 5.84491 6.02454 6.12913 6.23207 6.79283 6.96314 7.34953 8.89828 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.008050 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.080768 B = 3477.300584 C = 4248.796089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.153 4.153 4 C 0.075 3.925 5 O -0.510 6.510 6 C -0.109 4.109 7 C 0.069 3.931 8 C -0.515 4.515 9 H 0.050 0.950 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.963 3.037 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.265 1.265 16 C -0.075 4.075 17 C -0.094 4.094 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.079 4.079 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.395 0.605 27 H 0.004 0.996 28 H -0.006 1.006 29 H 0.264 0.736 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -4.921 0.506 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.172 4.172 4 C 0.031 3.969 5 O -0.321 6.321 6 C -0.109 4.109 7 C 0.032 3.968 8 C -0.553 4.553 9 H 0.069 0.931 10 C -0.192 4.192 11 N -0.570 5.570 12 Si 0.787 3.213 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.189 1.189 16 C -0.075 4.075 17 C -0.094 4.094 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.116 4.116 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.157 0.843 26 H 0.251 0.749 27 H 0.022 0.978 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.572 -4.967 -0.147 17.301 hybrid contribution 1.533 0.648 1.107 1.999 sum -15.039 -4.319 0.960 15.676 Atomic orbital electron populations 1.20860 0.88185 1.03901 1.03218 1.20046 0.97790 0.91234 1.00469 1.21305 0.92130 0.99395 1.04332 1.18480 0.90541 0.84862 1.03025 1.84666 1.76948 1.36150 1.34321 1.20871 0.97551 0.93299 0.99222 1.17885 0.87271 0.95268 0.96403 1.21185 0.91550 1.50692 0.91893 0.93150 1.25896 0.97072 0.94692 1.01509 1.70101 1.02485 1.51377 1.33076 0.85483 0.77743 0.78561 0.79497 1.19714 1.20642 1.18887 1.19556 0.93594 0.93962 1.00405 1.19810 0.91868 0.96388 1.01312 1.20561 0.97296 0.90027 1.02997 1.21565 0.95558 0.98740 0.99326 1.21542 0.96700 0.96661 1.00110 1.20413 0.97798 0.92454 1.00929 0.90134 0.90921 0.89521 0.84286 0.74854 0.97779 0.98804 0.92679 0.88445 0.89607 0.92333 0.88759 0.90585 0.91933 0.92592 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.52 71.24 0.68 -1.37 16 2 C -0.10 -2.86 5.88 -19.79 -0.12 -2.98 16 3 C -0.15 -5.30 9.63 22.30 0.21 -5.09 16 4 C 0.08 3.24 6.67 22.44 0.15 3.39 16 5 O -0.51 -22.05 12.53 -92.51 -1.16 -23.21 16 6 C -0.11 -5.18 5.09 -19.68 -0.10 -5.28 16 7 C 0.07 3.87 4.19 29.10 0.12 3.99 16 8 C -0.52 -29.78 8.53 25.60 0.22 -29.56 16 9 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 10 C 0.01 0.37 5.46 84.66 0.46 0.83 16 11 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 12 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 16 C -0.08 -3.06 5.74 -19.87 -0.11 -3.17 16 17 C -0.09 -3.03 5.74 -19.83 -0.11 -3.15 16 18 C -0.07 -1.63 4.97 29.74 0.15 -1.49 16 19 C -0.11 -2.55 5.98 30.61 0.18 -2.37 16 20 C -0.11 -3.18 5.98 30.62 0.18 -3.00 16 21 C -0.08 -3.06 4.44 29.74 0.13 -2.93 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 24 H 0.09 1.35 5.93 -2.39 -0.01 1.34 16 25 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 26 H 0.39 14.41 9.06 -74.06 -0.67 13.74 16 27 H 0.00 0.24 6.70 -2.38 -0.02 0.22 16 28 H -0.01 -0.40 7.51 -2.39 -0.02 -0.42 16 29 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 30 H 0.10 1.71 6.27 -2.39 -0.01 1.70 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.37 8.10 -2.38 -0.02 1.35 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16 36 H 0.06 2.58 6.71 -2.39 -0.02 2.56 16 37 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -70.30 295.71 3.60 -66.71 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.40 Total: 19.00 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 2.05 Total: -52.17 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.16 Total: -23.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.30 3.60 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.524 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds