Wall clock time and date at job start Mon Mar 30 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38296 * 119.96021 * 2 1 4 4 C 1.38169 * 120.22237 * 180.60183 * 3 2 1 5 5 C 1.50703 * 120.16323 * 179.71238 * 4 3 2 6 6 C 1.38898 * 119.67170 * 359.44129 * 4 3 2 7 7 C 1.37943 * 119.85444 * 359.66679 * 6 4 3 8 8 C 1.38033 * 120.52398 * 0.94076 * 7 6 4 9 9 C 1.51642 * 119.46760 * 181.41049 * 7 6 4 10 10 C 1.52882 * 108.70090 * 291.22278 * 9 7 6 11 11 H 1.08997 * 109.21477 * 322.95785 * 10 9 7 12 12 C 1.50701 * 109.21464 * 203.58733 * 10 9 7 13 13 H 1.08002 * 120.00052 * 0.02562 * 12 10 9 14 14 C 1.37873 * 120.00245 * 180.02562 * 12 10 9 15 15 N 1.31515 * 119.99836 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00242 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46893 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47059 * 120.00214 * 16 14 12 19 19 H 1.48497 * 109.47159 * 240.00232 * 16 14 12 20 20 C 1.52143 * 110.79722 * 83.29766 * 10 9 7 21 21 C 1.51436 * 113.45376 * 292.47921 * 20 10 9 22 22 O 1.36168 * 119.79917 * 178.30834 * 6 4 3 23 23 H 1.08995 * 109.47214 * 270.25298 * 1 2 3 24 24 H 1.09004 * 109.47101 * 30.24861 * 1 2 3 25 25 H 1.08999 * 109.46749 * 150.24864 * 1 2 3 26 26 H 1.07998 * 119.88697 * 0.33096 * 3 2 1 27 27 H 1.09002 * 109.47152 * 269.72627 * 5 4 3 28 28 H 1.09001 * 109.46980 * 149.72728 * 5 4 3 29 29 H 1.09004 * 109.47113 * 29.72708 * 5 4 3 30 30 H 1.08000 * 120.17986 * 179.33137 * 8 7 6 31 31 H 1.08996 * 109.60074 * 50.99217 * 9 7 6 32 32 H 1.09005 * 109.59939 * 171.30503 * 9 7 6 33 33 H 0.96999 * 119.99816 * 180.02562 * 15 14 12 34 34 H 1.08998 * 108.68755 * 53.50541 * 20 10 9 35 35 H 1.09001 * 108.69190 * 171.45245 * 20 10 9 36 36 H 1.08997 * 109.18383 * 185.85497 * 21 20 10 37 37 H 1.08999 * 109.18021 * 305.15112 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5793 1.2045 -0.0125 5 6 4.3305 2.5110 -0.0191 6 6 4.2724 0.0008 -0.0134 7 6 3.5785 -1.1912 0.0052 8 6 2.1982 -1.1989 0.0052 9 6 4.3442 -2.4997 0.0366 10 6 5.0539 -2.6847 -1.3048 11 1 4.4143 -2.3096 -2.1037 12 6 5.3177 -4.1515 -1.5282 13 1 5.0092 -4.8746 -0.7877 14 6 5.9530 -4.5704 -2.6779 15 7 6.3291 -3.6899 -3.5795 16 14 6.2794 -6.3887 -2.9551 17 1 5.7617 -7.1662 -1.8007 18 1 5.5945 -6.8310 -4.1963 19 1 7.7410 -6.6144 -3.0891 20 6 6.3751 -1.9305 -1.3255 21 6 6.2104 -0.4254 -1.2981 22 8 5.6333 0.0037 -0.0606 23 1 -0.3633 0.0045 1.0276 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5100 26 1 1.6552 2.1320 0.0054 27 1 4.5065 2.8237 -1.0483 28 1 5.2856 2.3834 0.4903 29 1 3.7426 3.2707 0.4961 30 1 1.6605 -2.1355 0.0089 31 1 5.0809 -2.4731 0.8394 32 1 3.6516 -3.3248 0.2033 33 1 6.7757 -3.9847 -4.3885 34 1 6.9636 -2.2333 -0.4595 35 1 6.9203 -2.2058 -2.2283 36 1 7.1866 0.0439 -1.4198 37 1 5.5619 -0.1211 -2.1196 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:17 Heat of formation + Delta-G solvation = -52.773413 kcal Electronic energy + Delta-G solvation = -18137.608814 eV Core-core repulsion = 15457.347767 eV Total energy + Delta-G solvation = -2680.261047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46791 -38.65099 -36.88538 -34.36420 -33.67925 -32.66197 -29.70971 -28.15020 -27.15355 -26.81058 -24.57334 -22.21473 -21.31608 -20.90667 -18.74703 -18.41117 -17.44844 -16.57294 -16.17600 -15.47900 -15.25201 -14.87354 -14.79164 -14.42231 -14.22718 -13.97263 -13.84089 -13.54558 -13.33923 -13.05003 -12.89657 -12.77200 -12.69262 -12.21242 -12.15143 -12.08028 -11.79031 -11.49727 -11.26526 -11.01066 -10.70464 -10.37875 -9.46666 -9.11717 -8.11792 -6.28271 0.31844 0.46426 1.38645 1.40615 1.52093 2.40418 2.52734 3.10462 3.17398 3.88904 3.91342 4.00102 4.20762 4.38604 4.43668 4.49682 4.54610 4.58580 4.63825 4.73266 4.79306 4.81762 4.84238 4.91472 5.01026 5.11084 5.16114 5.25037 5.36656 5.45446 5.55367 5.56381 5.66856 5.75668 5.88072 5.99090 6.07259 6.33244 6.66500 6.82903 7.40141 8.91031 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.006870 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.015324 B = 4074.431512 C = 4748.303651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.102 4.102 6 C 0.062 3.938 7 C -0.112 4.112 8 C -0.129 4.129 9 C -0.062 4.062 10 C 0.058 3.942 11 H -0.011 1.011 12 C -0.534 4.534 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.141 4.141 21 C 0.079 3.921 22 O -0.339 6.339 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.156 0.844 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 10.557 5.788 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.158 4.158 6 C 0.019 3.981 7 C -0.112 4.112 8 C -0.147 4.147 9 C -0.100 4.100 10 C 0.040 3.960 11 H 0.007 0.993 12 C -0.572 4.572 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.179 4.179 21 C 0.005 3.995 22 O -0.257 6.257 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.174 0.826 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.677 10.614 5.756 14.308 hybrid contribution 0.531 -1.488 -0.597 1.689 sum -7.146 9.126 5.159 12.687 Atomic orbital electron populations 1.20795 0.88505 1.03631 1.03312 1.20307 0.97887 0.92231 0.98842 1.21087 0.92188 0.98712 1.01845 1.20418 0.94674 0.94836 1.00701 1.20652 0.99971 0.92459 1.02742 1.18630 0.83430 0.92539 1.03504 1.20622 0.95234 0.95488 0.99898 1.21020 0.92290 0.98978 1.02393 1.20780 0.97781 0.92677 0.98746 1.18299 0.92159 0.94574 0.90970 0.99280 1.21626 1.38090 0.92990 1.04450 0.92878 1.25746 0.95258 1.01858 0.95647 1.69948 1.41015 1.34863 1.09690 0.85523 0.77900 0.80294 0.78060 1.19272 1.20526 1.20364 1.21674 1.00668 0.93357 1.02220 1.22545 0.97774 0.95523 0.83626 1.86140 1.16610 1.86345 1.36574 0.89803 0.89827 0.91457 0.82617 0.90940 0.91939 0.89122 0.85517 0.92856 0.92206 0.92797 0.94978 0.89555 0.87707 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.01 71.24 0.71 -1.35 16 2 C -0.09 -2.62 5.89 -19.81 -0.12 -2.73 16 3 C -0.12 -3.25 9.35 22.27 0.21 -3.04 16 4 C -0.11 -3.36 5.90 -19.72 -0.12 -3.48 16 5 C -0.10 -2.52 9.78 71.24 0.70 -1.82 16 6 C 0.06 2.46 5.58 22.36 0.12 2.58 16 7 C -0.11 -4.61 5.07 -19.68 -0.10 -4.71 16 8 C -0.13 -4.51 9.35 22.26 0.21 -4.30 16 9 C -0.06 -2.88 4.92 30.11 0.15 -2.73 16 10 C 0.06 3.07 1.92 -11.86 -0.02 3.05 16 11 H -0.01 -0.64 7.90 -2.39 -0.02 -0.66 16 12 C -0.53 -30.13 8.46 25.60 0.22 -29.91 16 13 H 0.05 2.95 7.64 -2.91 -0.02 2.93 16 14 C 0.01 0.74 5.26 84.65 0.45 1.19 16 15 N -0.92 -52.73 11.15 21.45 0.24 -52.49 16 16 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.14 -7.01 4.73 29.80 0.14 -6.87 16 21 C 0.08 3.33 6.49 71.47 0.46 3.80 16 22 O -0.34 -14.02 9.06 -95.47 -0.86 -14.88 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 25 H 0.07 1.29 8.08 -2.39 -0.02 1.28 16 26 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.66 7.56 -2.39 -0.02 1.65 16 29 H 0.09 1.67 8.09 -2.38 -0.02 1.66 16 30 H 0.13 4.15 7.98 -2.91 -0.02 4.12 16 31 H 0.05 2.47 7.88 -2.39 -0.02 2.46 16 32 H 0.06 2.67 7.64 -2.38 -0.02 2.66 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.03 1.59 8.01 -2.39 -0.02 1.57 16 35 H 0.09 4.72 5.64 -2.39 -0.01 4.71 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 Total: -1.00 -63.64 296.97 5.45 -58.19 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.04 Total: 13.66 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 3.01 Total: -50.31 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.24 Total: -52.49 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.86 Total: -14.88 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.64 5.45 -58.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.418 kcal (2) G-P(sol) polarization free energy of solvation -63.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds