Wall clock time and date at job start Mon Mar 30 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99739 * 2 1 4 4 H 1.48502 * 109.46920 * 239.99664 * 3 2 1 5 5 H 1.48497 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47087 * 119.99952 * 3 2 1 7 7 C 1.37868 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 185.73756 * 7 2 1 9 9 C 1.50704 * 120.00022 * 5.74114 * 7 2 1 10 10 H 1.09001 * 109.46885 * 334.78229 * 9 7 2 11 11 C 1.50704 * 109.47089 * 94.77325 * 9 7 2 12 12 C 1.38163 * 120.02617 * 60.02602 * 11 9 7 13 13 C 1.38244 * 120.05466 * 179.97438 * 12 11 9 14 14 C 1.38285 * 120.11290 * 0.02562 * 13 12 11 15 15 C 1.38125 * 120.05595 * 359.95760 * 14 13 12 16 16 C 1.38705 * 120.02764 * 240.00128 * 11 9 7 17 17 O 1.35902 * 120.05714 * 359.75223 * 16 11 9 18 18 C 1.52992 * 109.47425 * 214.77647 * 9 7 2 19 19 C 1.54263 * 110.03545 * 180.54404 * 18 9 7 20 20 C 1.54963 * 104.16302 * 217.13960 * 19 18 9 21 21 C 1.54893 * 102.77882 * 37.88210 * 20 19 18 22 22 C 1.53874 * 110.03479 * 63.32468 * 18 9 7 23 23 H 0.97002 * 120.00355 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.97397 * 0.02562 * 12 11 9 25 25 H 1.07999 * 119.94402 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.96894 * 179.97438 * 14 13 12 27 27 H 1.07992 * 120.02869 * 180.02562 * 15 14 13 28 28 H 0.96698 * 114.00383 * 89.99899 * 17 16 11 29 29 H 1.09004 * 110.01998 * 301.93214 * 18 9 7 30 30 H 1.09005 * 110.48534 * 335.78368 * 19 18 9 31 31 H 1.09001 * 110.48808 * 98.42406 * 19 18 9 32 32 H 1.09011 * 110.71939 * 279.57141 * 20 19 18 33 33 H 1.09005 * 110.92812 * 156.29321 * 20 19 18 34 34 H 1.08996 * 110.48752 * 203.41078 * 21 20 19 35 35 H 1.09003 * 110.59326 * 80.82353 * 21 20 19 36 36 H 1.08994 * 110.03744 * 238.57435 * 22 18 9 37 37 H 1.09007 * 110.02990 * 359.95208 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0804 -1.1962 0.0940 9 6 1.2568 -2.4959 -0.1294 10 1 0.2354 -2.3655 0.2282 11 6 1.2323 -2.9189 -1.5757 12 6 2.4168 -3.1465 -2.2496 13 6 2.3950 -3.5351 -3.5761 14 6 1.1884 -3.6965 -4.2320 15 6 0.0015 -3.4706 -3.5627 16 6 0.0207 -3.0807 -2.2312 17 8 -1.1459 -2.8628 -1.5689 18 6 1.9559 -3.5711 0.7047 19 6 1.2083 -4.9137 0.5700 20 6 1.3014 -5.5430 1.9831 21 6 1.1429 -4.3163 2.9155 22 6 1.9148 -3.1915 2.1953 23 1 -0.4851 0.8400 0.0004 24 1 3.3605 -3.0215 -1.7394 25 1 3.3220 -3.7121 -4.1013 26 1 1.1742 -3.9998 -5.2685 27 1 -0.9406 -3.5972 -4.0753 28 1 -1.4643 -1.9513 -1.6223 29 1 2.9892 -3.6846 0.3767 30 1 0.1670 -4.7447 0.2958 31 1 1.6988 -5.5514 -0.1655 32 1 2.2716 -6.0175 2.1308 33 1 0.4947 -6.2580 2.1448 34 1 1.5854 -4.5187 3.8908 35 1 0.0914 -4.0495 3.0225 36 1 2.9280 -3.1215 2.5909 37 1 1.3975 -2.2407 2.3243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:33 Heat of formation + Delta-G solvation = -47.060508 kcal Electronic energy + Delta-G solvation = -18441.253037 eV Core-core repulsion = 15761.239720 eV Total energy + Delta-G solvation = -2680.013316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.15890 -37.27834 -35.59321 -33.46503 -31.26590 -29.10678 -28.27124 -27.72681 -25.65968 -23.04035 -21.66809 -20.43806 -19.87118 -18.35292 -17.32827 -16.38171 -15.50909 -14.83918 -14.76830 -14.50465 -14.15349 -13.89948 -13.01779 -12.73994 -12.60383 -12.43264 -11.53613 -11.40613 -11.35816 -11.10776 -10.95549 -10.69538 -10.49795 -10.43484 -10.26085 -10.07109 -9.93094 -9.76837 -9.48202 -9.09901 -8.87169 -8.47782 -7.94914 -7.48384 -6.09491 -4.10139 2.13347 2.28152 3.28007 3.32706 3.36163 4.36862 4.55140 5.21621 5.28264 5.40347 5.45151 5.51685 5.63211 5.72022 5.93653 6.15599 6.19128 6.24303 6.28826 6.38129 6.43315 6.49330 6.57312 6.61751 6.73718 6.78591 6.98440 7.00207 7.11733 7.14201 7.19276 7.33230 7.41828 7.60532 7.75422 7.83446 8.03019 8.37089 8.67754 8.98955 9.52142 10.98843 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.012480 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.207249 B = 2243.031103 C = 3444.204576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.069 3.931 10 H 0.081 0.919 11 C -0.040 4.040 12 C -0.105 4.105 13 C -0.140 4.140 14 C -0.141 4.141 15 C -0.157 4.157 16 C 0.100 3.900 17 O -0.498 6.498 18 C -0.071 4.071 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.107 4.107 23 H 0.262 0.738 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.391 0.609 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -6.472 -1.664 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.050 3.950 10 H 0.099 0.901 11 C -0.042 4.042 12 C -0.123 4.123 13 C -0.159 4.159 14 C -0.159 4.159 15 C -0.175 4.175 16 C 0.055 3.945 17 O -0.308 6.308 18 C -0.090 4.090 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.144 4.144 23 H 0.071 0.929 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.248 0.752 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.177 -6.925 -1.515 7.186 hybrid contribution 0.475 1.584 -0.347 1.689 sum 1.653 -5.342 -1.862 5.893 Atomic orbital electron populations 1.69868 1.05824 1.26705 1.50335 1.24929 0.94855 0.98993 0.94594 0.86744 0.79788 0.83355 0.78683 1.20297 1.21352 1.20221 1.20993 0.93192 0.90036 1.49624 0.92798 1.18170 0.99873 0.91567 0.85356 0.90117 1.21123 0.90908 0.91775 1.00351 1.20869 0.98278 0.99420 0.93739 1.20993 0.97068 1.02424 0.95371 1.20655 0.92402 1.03878 0.98957 1.21263 0.97961 1.04087 0.94238 1.18387 0.85970 1.00410 0.89724 1.84635 1.37043 1.34199 1.74933 1.21756 0.98165 0.93801 0.95253 1.22491 1.01211 0.96890 0.95196 1.22494 1.00088 0.97095 0.96498 1.22377 1.00473 0.95905 0.97461 1.22041 0.98853 0.98760 0.94763 0.92870 0.86623 0.87424 0.87363 0.87090 0.75246 0.93184 0.91486 0.93244 0.92572 0.92861 0.93124 0.92130 0.93612 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 12.77 55.43 0.71 -22.98 16 2 C 0.07 1.79 5.45 -17.83 -0.10 1.69 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -12.79 7.01 -34.44 -0.24 -13.03 16 8 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 9 C 0.07 1.61 1.34 -92.92 -0.12 1.48 16 10 H 0.08 2.12 6.09 -51.93 -0.32 1.80 16 11 C -0.04 -0.90 4.05 -104.47 -0.42 -1.32 16 12 C -0.10 -2.14 8.84 -39.61 -0.35 -2.49 16 13 C -0.14 -2.53 10.04 -39.56 -0.40 -2.92 16 14 C -0.14 -2.45 10.04 -39.61 -0.40 -2.85 16 15 C -0.16 -2.97 9.99 -39.43 -0.39 -3.36 16 16 C 0.10 2.14 6.68 -39.22 -0.26 1.88 16 17 O -0.50 -10.65 12.27 -19.43 -0.24 -10.89 16 18 C -0.07 -1.46 2.27 -89.51 -0.20 -1.66 16 19 C -0.12 -2.25 5.66 -25.03 -0.14 -2.39 16 20 C -0.12 -2.00 6.91 -24.70 -0.17 -2.17 16 21 C -0.12 -2.10 6.83 -25.07 -0.17 -2.27 16 22 C -0.11 -2.09 6.06 -25.61 -0.16 -2.24 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.12 2.30 7.61 -52.48 -0.40 1.90 16 25 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.39 7.90 9.06 45.56 0.41 8.31 16 29 H 0.05 1.03 7.49 -51.93 -0.39 0.64 16 30 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.76 7.24 -51.92 -0.38 1.39 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -26.65 301.57 -8.36 -35.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.82 Total: 10.37 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -3.53 Total: -31.67 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.71 Total: -22.98 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.24 Total: -10.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.65 -8.36 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.043 kcal (2) G-P(sol) polarization free energy of solvation -26.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds