Wall clock time and date at job start Mon Mar 30 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99739 * 2 1 4 4 H 1.48502 * 109.46920 * 239.99664 * 3 2 1 5 5 H 1.48497 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47087 * 119.99952 * 3 2 1 7 7 C 1.37868 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 185.73756 * 7 2 1 9 9 C 1.50704 * 120.00022 * 5.74114 * 7 2 1 10 10 H 1.09001 * 109.46885 * 334.78229 * 9 7 2 11 11 C 1.50704 * 109.47089 * 94.77325 * 9 7 2 12 12 C 1.38163 * 120.02617 * 60.02602 * 11 9 7 13 13 C 1.38244 * 120.05466 * 179.97438 * 12 11 9 14 14 C 1.38285 * 120.11290 * 0.02562 * 13 12 11 15 15 C 1.38125 * 120.05595 * 359.95760 * 14 13 12 16 16 C 1.38705 * 120.02764 * 240.00128 * 11 9 7 17 17 O 1.35902 * 120.05714 * 359.75223 * 16 11 9 18 18 C 1.52992 * 109.47425 * 214.77647 * 9 7 2 19 19 C 1.54263 * 110.03545 * 180.54404 * 18 9 7 20 20 C 1.54963 * 104.16302 * 217.13960 * 19 18 9 21 21 C 1.54893 * 102.77882 * 37.88210 * 20 19 18 22 22 C 1.53874 * 110.03479 * 63.32468 * 18 9 7 23 23 H 0.97002 * 120.00355 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.97397 * 0.02562 * 12 11 9 25 25 H 1.07999 * 119.94402 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.96894 * 179.97438 * 14 13 12 27 27 H 1.07992 * 120.02869 * 180.02562 * 15 14 13 28 28 H 0.96698 * 114.00383 * 89.99899 * 17 16 11 29 29 H 1.09004 * 110.01998 * 301.93214 * 18 9 7 30 30 H 1.09005 * 110.48534 * 335.78368 * 19 18 9 31 31 H 1.09001 * 110.48808 * 98.42406 * 19 18 9 32 32 H 1.09011 * 110.71939 * 279.57141 * 20 19 18 33 33 H 1.09005 * 110.92812 * 156.29321 * 20 19 18 34 34 H 1.08996 * 110.48752 * 203.41078 * 21 20 19 35 35 H 1.09003 * 110.59326 * 80.82353 * 21 20 19 36 36 H 1.08994 * 110.03744 * 238.57435 * 22 18 9 37 37 H 1.09007 * 110.02990 * 359.95208 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0804 -1.1962 0.0940 9 6 1.2568 -2.4959 -0.1294 10 1 0.2354 -2.3655 0.2282 11 6 1.2323 -2.9189 -1.5757 12 6 2.4168 -3.1465 -2.2496 13 6 2.3950 -3.5351 -3.5761 14 6 1.1884 -3.6965 -4.2320 15 6 0.0015 -3.4706 -3.5627 16 6 0.0207 -3.0807 -2.2312 17 8 -1.1459 -2.8628 -1.5689 18 6 1.9559 -3.5711 0.7047 19 6 1.2083 -4.9137 0.5700 20 6 1.3014 -5.5430 1.9831 21 6 1.1429 -4.3163 2.9155 22 6 1.9148 -3.1915 2.1953 23 1 -0.4851 0.8400 0.0004 24 1 3.3605 -3.0215 -1.7394 25 1 3.3220 -3.7121 -4.1013 26 1 1.1742 -3.9998 -5.2685 27 1 -0.9406 -3.5972 -4.0753 28 1 -1.4643 -1.9513 -1.6223 29 1 2.9892 -3.6846 0.3767 30 1 0.1670 -4.7447 0.2958 31 1 1.6988 -5.5514 -0.1655 32 1 2.2716 -6.0175 2.1308 33 1 0.4947 -6.2580 2.1448 34 1 1.5854 -4.5187 3.8908 35 1 0.0914 -4.0495 3.0225 36 1 2.9280 -3.1215 2.5909 37 1 1.3975 -2.2407 2.3243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:33 Heat of formation + Delta-G solvation = -60.826600 kcal Electronic energy + Delta-G solvation = -18441.849979 eV Core-core repulsion = 15761.239720 eV Total energy + Delta-G solvation = -2680.610259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73814 -38.80857 -37.17969 -35.26059 -33.02460 -30.63297 -29.81950 -29.22969 -27.46115 -24.75334 -23.22136 -22.01527 -21.28561 -20.01390 -18.91771 -18.31825 -17.01246 -16.58963 -16.38061 -16.09763 -15.68500 -15.45603 -14.54459 -14.46845 -14.12680 -13.98586 -13.27522 -13.09586 -12.93495 -12.85052 -12.65160 -12.33118 -12.21083 -11.81337 -11.76111 -11.62046 -11.51214 -11.35022 -11.19417 -10.82444 -10.64940 -10.42573 -9.47780 -9.07519 -8.07362 -6.12914 0.59804 0.76465 1.40663 1.41820 1.47715 2.43975 2.99073 3.24666 3.73387 3.94402 3.99938 4.06650 4.25349 4.31209 4.49987 4.65336 4.72309 4.76935 4.86402 4.92494 4.93976 5.02663 5.09115 5.18356 5.21415 5.25831 5.45226 5.47089 5.52534 5.59711 5.66884 5.69228 5.74718 5.86100 5.99976 6.15331 6.25069 6.48398 6.98505 7.07109 7.50335 8.99528 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.012480 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.207249 B = 2243.031103 C = 3444.204576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.046 0.954 9 C 0.076 3.924 10 H 0.043 0.957 11 C -0.066 4.066 12 C -0.121 4.121 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.159 4.159 16 C 0.071 3.929 17 O -0.507 6.507 18 C -0.072 4.072 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.107 4.107 23 H 0.259 0.741 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.390 0.610 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -7.829 -2.726 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.057 3.943 10 H 0.061 0.939 11 C -0.067 4.067 12 C -0.139 4.139 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.177 4.177 16 C 0.026 3.974 17 O -0.317 6.317 18 C -0.091 4.091 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.131 0.869 25 H 0.161 0.839 26 H 0.167 0.833 27 H 0.150 0.850 28 H 0.246 0.754 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.372 -8.290 -2.575 8.999 hybrid contribution 0.125 1.968 -0.079 1.973 sum 2.497 -6.323 -2.654 7.298 Atomic orbital electron populations 1.69985 1.06713 1.26925 1.51510 1.25535 0.95569 1.01535 0.94930 0.85931 0.78691 0.80375 0.78553 1.20225 1.21288 1.19888 1.21215 0.92890 0.91369 1.48961 0.93536 1.17942 0.97577 0.91746 0.87031 0.93854 1.21053 0.92180 0.93771 0.99688 1.20977 0.97422 1.00359 0.95162 1.21380 0.98988 1.00559 0.94270 1.21132 0.91329 1.01827 1.00631 1.21551 0.99835 1.03185 0.93170 1.18703 0.85588 1.01976 0.91090 1.84620 1.37399 1.34160 1.75534 1.21719 0.97882 0.94154 0.95307 1.22364 0.99281 0.96147 0.97338 1.22471 1.01985 0.96847 0.93881 1.22343 0.99599 0.95092 0.98700 1.21996 0.99418 0.98156 0.94889 0.93143 0.86891 0.83903 0.83263 0.85007 0.75418 0.93295 0.94021 0.92602 0.90495 0.91009 0.90396 0.93162 0.92550 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.50 12.77 21.44 0.27 -50.22 16 2 C 0.02 1.27 5.45 84.65 0.46 1.73 16 3 Si 0.94 43.07 29.54 68.60 2.03 45.09 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.51 -26.70 7.01 25.60 0.18 -26.52 16 8 H 0.05 2.45 7.82 -2.91 -0.02 2.43 16 9 C 0.08 3.67 1.34 -12.29 -0.02 3.66 16 10 H 0.04 2.41 6.09 -2.39 -0.01 2.39 16 11 C -0.07 -2.97 4.05 -19.77 -0.08 -3.05 16 12 C -0.12 -4.86 8.84 22.25 0.20 -4.66 16 13 C -0.13 -4.43 10.04 22.28 0.22 -4.21 16 14 C -0.13 -4.12 10.04 22.25 0.22 -3.90 16 15 C -0.16 -5.74 9.99 22.37 0.22 -5.52 16 16 C 0.07 3.07 6.68 22.51 0.15 3.22 16 17 O -0.51 -22.60 12.27 -92.45 -1.13 -23.74 16 18 C -0.07 -3.00 2.27 -10.07 -0.02 -3.03 16 19 C -0.11 -4.22 5.66 31.69 0.18 -4.04 16 20 C -0.11 -3.45 6.91 31.91 0.22 -3.23 16 21 C -0.12 -3.91 6.83 31.67 0.22 -3.69 16 22 C -0.11 -4.24 6.06 31.32 0.19 -4.06 16 23 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 24 H 0.11 4.48 7.61 -2.91 -0.02 4.45 16 25 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 26 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.39 16.75 9.06 -74.06 -0.67 16.08 16 29 H 0.05 2.02 7.49 -2.39 -0.02 2.00 16 30 H 0.04 1.74 7.83 -2.38 -0.02 1.72 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.97 7.24 -2.38 -0.02 1.95 16 Total: -1.00 -58.84 301.57 3.89 -54.95 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.38 Total: 31.21 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 2.35 Total: -57.30 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.27 Total: -50.22 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.13 Total: -23.74 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -58.84 3.89 -54.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.876 kcal (2) G-P(sol) polarization free energy of solvation -58.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds