Wall clock time and date at job start Mon Mar 30 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48510 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47430 * 300.00272 * 3 2 1 6 6 H 1.48496 * 109.46953 * 60.00545 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00696 * 185.76681 * 7 2 1 9 9 C 1.50701 * 119.99906 * 5.76060 * 7 2 1 10 10 H 1.09002 * 109.47212 * 24.99106 * 9 7 2 11 11 C 1.50711 * 109.47201 * 264.99136 * 9 7 2 12 12 C 1.38165 * 120.02672 * 299.82515 * 11 9 7 13 13 C 1.38243 * 120.05431 * 179.97438 * 12 11 9 14 14 C 1.38287 * 120.11173 * 359.97350 * 13 12 11 15 15 C 1.38130 * 120.05534 * 0.02615 * 14 13 12 16 16 C 1.38710 * 120.02565 * 119.54338 * 11 9 7 17 17 O 1.35898 * 120.05469 * 0.02562 * 16 11 9 18 18 C 1.52995 * 109.47382 * 144.99204 * 9 7 2 19 19 C 1.54270 * 110.03086 * 297.16923 * 18 9 7 20 20 C 1.54895 * 104.19455 * 217.10311 * 19 18 9 21 21 C 1.54895 * 102.74674 * 37.94083 * 20 19 18 22 22 C 1.53873 * 110.03712 * 179.97438 * 18 9 7 23 23 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.97277 * 359.96988 * 12 11 9 25 25 H 1.07998 * 119.94528 * 179.97438 * 13 12 11 26 26 H 1.07998 * 119.97319 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.02607 * 179.97438 * 15 14 13 28 28 H 0.96699 * 114.00025 * 90.00324 * 17 16 11 29 29 H 1.09001 * 110.01604 * 58.60835 * 18 9 7 30 30 H 1.08992 * 110.48260 * 335.78184 * 19 18 9 31 31 H 1.08996 * 110.48686 * 98.42626 * 19 18 9 32 32 H 1.08999 * 110.75419 * 279.62829 * 20 19 18 33 33 H 1.08998 * 110.75236 * 156.25653 * 20 19 18 34 34 H 1.09001 * 110.48346 * 203.37807 * 21 20 19 35 35 H 1.09002 * 110.59694 * 80.79345 * 21 20 19 36 36 H 1.08997 * 110.03517 * 238.57421 * 22 18 9 37 37 H 1.09003 * 110.02871 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1965 0.0934 9 6 1.2567 -2.4958 -0.1321 10 1 0.3095 -2.3208 -0.6423 11 6 0.9916 -3.0636 1.2385 12 6 2.0470 -3.3719 2.0752 13 6 1.8044 -3.8922 3.3328 14 6 0.5055 -4.1051 3.7568 15 6 -0.5531 -3.7985 2.9241 16 6 -0.3124 -3.2717 1.6633 17 8 -1.3523 -2.9644 0.8441 18 6 2.0962 -3.4867 -0.9409 19 6 2.3156 -2.9498 -2.3705 20 6 2.2509 -4.2129 -3.2646 21 6 1.1327 -5.0493 -2.5943 22 6 1.3445 -4.8218 -1.0827 23 1 -0.4850 0.8400 0.0004 24 1 3.0624 -3.2062 1.7465 25 1 2.6307 -4.1329 3.9852 26 1 0.3186 -4.5121 4.7395 27 1 -1.5673 -3.9653 3.2556 28 1 -1.6316 -3.6930 0.2729 29 1 3.0562 -3.6494 -0.4510 30 1 1.5248 -2.2502 -2.6407 31 1 3.2924 -2.4734 -2.4533 32 1 3.1995 -4.7495 -3.2444 33 1 1.9766 -3.9494 -4.2861 34 1 1.2464 -6.1051 -2.8405 35 1 0.1499 -4.6908 -2.9003 36 1 1.9401 -5.6321 -0.6626 37 1 0.3817 -4.7639 -0.5749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:35 Heat of formation + Delta-G solvation = -42.676007 kcal Electronic energy + Delta-G solvation = -18445.334351 eV Core-core repulsion = 15765.511160 eV Total energy + Delta-G solvation = -2679.823190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19485 -37.32027 -35.63767 -33.42462 -31.21776 -29.08864 -28.29688 -27.82944 -25.64278 -22.98318 -21.65289 -20.51146 -19.91803 -18.36450 -17.39720 -16.47520 -15.31949 -14.94861 -14.69458 -14.45782 -14.29930 -13.84137 -13.00471 -12.74558 -12.67440 -12.39541 -11.58748 -11.43229 -11.29145 -11.06577 -10.91197 -10.66950 -10.54346 -10.41704 -10.32763 -10.12923 -10.00842 -9.84751 -9.41926 -9.09712 -8.86226 -8.39815 -7.91858 -7.45147 -5.94095 -3.99941 2.15808 2.31190 3.31318 3.40017 3.42703 4.44646 4.59763 5.16285 5.24450 5.35517 5.39277 5.42516 5.65051 5.74096 5.94605 6.04350 6.13913 6.16790 6.27235 6.31771 6.36376 6.46005 6.50090 6.54127 6.69637 6.76411 6.81241 7.00026 7.07540 7.13794 7.18695 7.25737 7.42716 7.61526 7.79759 7.86124 8.04664 8.41623 8.66617 9.06599 9.62110 11.10675 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.012352 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.497626 B = 2266.269359 C = 3458.057476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.075 3.925 10 H 0.075 0.925 11 C -0.037 4.037 12 C -0.106 4.106 13 C -0.140 4.140 14 C -0.142 4.142 15 C -0.156 4.156 16 C 0.099 3.901 17 O -0.474 6.474 18 C -0.076 4.076 19 C -0.100 4.100 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.119 4.119 23 H 0.259 0.741 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.366 0.634 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -9.449 -0.630 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.056 3.944 10 H 0.093 0.907 11 C -0.038 4.038 12 C -0.125 4.125 13 C -0.158 4.158 14 C -0.161 4.161 15 C -0.175 4.175 16 C 0.054 3.946 17 O -0.281 6.281 18 C -0.095 4.095 19 C -0.137 4.137 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.219 0.781 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.089 -8.754 -0.356 8.829 hybrid contribution 0.378 0.646 0.089 0.753 sum 1.467 -8.108 -0.267 8.244 Atomic orbital electron populations 1.70035 1.05544 1.26183 1.48309 1.25006 0.94795 0.98951 0.94839 0.86699 0.80338 0.84444 0.77516 1.19760 1.21010 1.21232 1.20932 0.92836 0.89712 1.51057 0.92785 1.18125 0.97773 0.91509 0.86980 0.90701 1.21119 0.90980 0.91385 1.00345 1.20860 0.99169 0.99083 0.93351 1.20983 0.96130 1.02008 0.96673 1.20642 0.92725 1.03684 0.99026 1.21270 0.98647 1.02144 0.95434 1.18362 0.87320 0.98617 0.90306 1.85044 1.49106 1.39564 1.54409 1.21852 0.98309 0.93394 0.95941 1.22202 1.01628 0.95775 0.94122 1.22558 0.97968 0.97669 0.98474 1.22337 0.98878 0.98484 0.96251 1.22259 1.00217 0.98097 0.95105 0.93138 0.86686 0.87481 0.87427 0.87150 0.78088 0.92967 0.91119 0.92624 0.92561 0.92668 0.93074 0.92068 0.93339 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 12.85 55.43 0.71 -24.16 16 2 C 0.07 1.87 5.45 -17.83 -0.10 1.78 16 3 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -13.34 7.34 -34.44 -0.25 -13.59 16 8 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.07 1.74 1.30 -92.92 -0.12 1.62 16 10 H 0.07 1.95 6.22 -51.93 -0.32 1.63 16 11 C -0.04 -0.83 3.74 -104.47 -0.39 -1.22 16 12 C -0.11 -2.20 8.84 -39.61 -0.35 -2.54 16 13 C -0.14 -2.54 10.04 -39.56 -0.40 -2.94 16 14 C -0.14 -2.52 10.04 -39.60 -0.40 -2.92 16 15 C -0.16 -2.99 9.99 -39.43 -0.39 -3.38 16 16 C 0.10 2.13 6.39 -39.22 -0.25 1.87 16 17 O -0.47 -10.13 12.27 -19.42 -0.24 -10.37 16 18 C -0.08 -1.50 2.28 -89.50 -0.20 -1.70 16 19 C -0.10 -1.87 5.77 -25.07 -0.14 -2.01 16 20 C -0.13 -1.97 6.91 -24.73 -0.17 -2.14 16 21 C -0.12 -1.83 6.83 -25.04 -0.17 -2.00 16 22 C -0.12 -2.02 6.03 -25.59 -0.15 -2.17 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.12 2.31 7.60 -52.48 -0.40 1.91 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.37 5.94 9.06 45.56 0.41 6.36 16 29 H 0.05 1.04 7.47 -51.93 -0.39 0.65 16 30 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.96 6.87 -51.93 -0.36 0.61 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -29.51 301.12 -8.32 -37.82 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.81 Total: 7.25 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -3.50 Total: -31.36 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.71 Total: -24.16 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.24 Total: -10.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.51 -8.32 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.852 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds