Wall clock time and date at job start Mon Mar 30 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48510 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47430 * 300.00272 * 3 2 1 6 6 H 1.48496 * 109.46953 * 60.00545 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00696 * 185.76681 * 7 2 1 9 9 C 1.50701 * 119.99906 * 5.76060 * 7 2 1 10 10 H 1.09002 * 109.47212 * 24.99106 * 9 7 2 11 11 C 1.50711 * 109.47201 * 264.99136 * 9 7 2 12 12 C 1.38165 * 120.02672 * 299.82515 * 11 9 7 13 13 C 1.38243 * 120.05431 * 179.97438 * 12 11 9 14 14 C 1.38287 * 120.11173 * 359.97350 * 13 12 11 15 15 C 1.38130 * 120.05534 * 0.02615 * 14 13 12 16 16 C 1.38710 * 120.02565 * 119.54338 * 11 9 7 17 17 O 1.35898 * 120.05469 * 0.02562 * 16 11 9 18 18 C 1.52995 * 109.47382 * 144.99204 * 9 7 2 19 19 C 1.54270 * 110.03086 * 297.16923 * 18 9 7 20 20 C 1.54895 * 104.19455 * 217.10311 * 19 18 9 21 21 C 1.54895 * 102.74674 * 37.94083 * 20 19 18 22 22 C 1.53873 * 110.03712 * 179.97438 * 18 9 7 23 23 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.97277 * 359.96988 * 12 11 9 25 25 H 1.07998 * 119.94528 * 179.97438 * 13 12 11 26 26 H 1.07998 * 119.97319 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.02607 * 179.97438 * 15 14 13 28 28 H 0.96699 * 114.00025 * 90.00324 * 17 16 11 29 29 H 1.09001 * 110.01604 * 58.60835 * 18 9 7 30 30 H 1.08992 * 110.48260 * 335.78184 * 19 18 9 31 31 H 1.08996 * 110.48686 * 98.42626 * 19 18 9 32 32 H 1.08999 * 110.75419 * 279.62829 * 20 19 18 33 33 H 1.08998 * 110.75236 * 156.25653 * 20 19 18 34 34 H 1.09001 * 110.48346 * 203.37807 * 21 20 19 35 35 H 1.09002 * 110.59694 * 80.79345 * 21 20 19 36 36 H 1.08997 * 110.03517 * 238.57421 * 22 18 9 37 37 H 1.09003 * 110.02871 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1965 0.0934 9 6 1.2567 -2.4958 -0.1321 10 1 0.3095 -2.3208 -0.6423 11 6 0.9916 -3.0636 1.2385 12 6 2.0470 -3.3719 2.0752 13 6 1.8044 -3.8922 3.3328 14 6 0.5055 -4.1051 3.7568 15 6 -0.5531 -3.7985 2.9241 16 6 -0.3124 -3.2717 1.6633 17 8 -1.3523 -2.9644 0.8441 18 6 2.0962 -3.4867 -0.9409 19 6 2.3156 -2.9498 -2.3705 20 6 2.2509 -4.2129 -3.2646 21 6 1.1327 -5.0493 -2.5943 22 6 1.3445 -4.8218 -1.0827 23 1 -0.4850 0.8400 0.0004 24 1 3.0624 -3.2062 1.7465 25 1 2.6307 -4.1329 3.9852 26 1 0.3186 -4.5121 4.7395 27 1 -1.5673 -3.9653 3.2556 28 1 -1.6316 -3.6930 0.2729 29 1 3.0562 -3.6494 -0.4510 30 1 1.5248 -2.2502 -2.6407 31 1 3.2924 -2.4734 -2.4533 32 1 3.1995 -4.7495 -3.2444 33 1 1.9766 -3.9494 -4.2861 34 1 1.2464 -6.1051 -2.8405 35 1 0.1499 -4.6908 -2.9003 36 1 1.9401 -5.6321 -0.6626 37 1 0.3817 -4.7639 -0.5749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:34 Heat of formation + Delta-G solvation = -59.306397 kcal Electronic energy + Delta-G solvation = -18446.055498 eV Core-core repulsion = 15765.511160 eV Total energy + Delta-G solvation = -2680.544338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75806 -38.77695 -37.20828 -35.24153 -33.01005 -30.61341 -29.80256 -29.23519 -27.45909 -24.71112 -23.20266 -22.06006 -21.26354 -19.92895 -18.97653 -18.42391 -16.87419 -16.58635 -16.28190 -16.10585 -15.83241 -15.35440 -14.56751 -14.29723 -14.15157 -14.00984 -13.34114 -13.10937 -12.92947 -12.80600 -12.57071 -12.34001 -12.14504 -11.82231 -11.70993 -11.65573 -11.49237 -11.35016 -11.11567 -10.81565 -10.68633 -10.38351 -9.45300 -9.04297 -8.01136 -6.11408 0.63385 0.78890 1.36611 1.39639 1.48918 2.44402 3.04824 3.28727 3.67007 3.95552 4.00618 4.07200 4.27445 4.32761 4.51873 4.67146 4.72277 4.80686 4.87795 4.94220 4.96154 5.04876 5.09775 5.20980 5.23220 5.28223 5.41794 5.47746 5.56693 5.62715 5.64927 5.70725 5.75133 5.86815 6.01468 6.16637 6.29135 6.48912 7.02015 7.19699 7.52452 9.02244 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.012352 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.497626 B = 2266.269359 C = 3458.057476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.018 3.982 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.081 3.919 10 H 0.039 0.961 11 C -0.064 4.064 12 C -0.123 4.123 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.162 4.162 16 C 0.077 3.923 17 O -0.496 6.496 18 C -0.075 4.075 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.114 4.114 23 H 0.254 0.746 24 H 0.111 0.889 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.383 0.617 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -11.225 0.206 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.062 3.938 10 H 0.057 0.943 11 C -0.065 4.065 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.180 4.180 16 C 0.032 3.968 17 O -0.305 6.305 18 C -0.094 4.094 19 C -0.141 4.141 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.151 4.151 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.159 0.841 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.238 0.762 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.940 -10.546 0.470 10.733 hybrid contribution 0.127 1.130 -0.114 1.143 sum 2.067 -9.416 0.356 9.647 Atomic orbital electron populations 1.70178 1.06750 1.26265 1.50539 1.25655 0.95461 1.01827 0.95295 0.85852 0.79556 0.81157 0.77198 1.18976 1.20727 1.21616 1.21245 0.92612 0.91363 1.49477 0.93538 1.17913 0.96137 0.91463 0.88276 0.94263 1.21034 0.92112 0.93432 0.99895 1.20967 0.98537 1.00014 0.94575 1.21353 0.97706 1.00458 0.95865 1.21110 0.91892 1.01907 1.00174 1.21556 1.00392 1.01543 0.94529 1.18647 0.87015 0.99648 0.91452 1.84979 1.49242 1.41231 1.55093 1.21771 0.97719 0.94225 0.95671 1.22162 1.00049 0.97043 0.94812 1.22512 0.99097 0.95679 0.98344 1.22328 0.98552 1.00172 0.94424 1.22177 0.99473 0.96676 0.96811 0.93721 0.87067 0.84072 0.83450 0.85128 0.76193 0.93427 0.94281 0.93149 0.90721 0.91229 0.90145 0.92479 0.91958 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.75 12.85 21.44 0.28 -53.47 16 2 C 0.02 1.00 5.45 84.66 0.46 1.46 16 3 Si 0.94 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.51 -27.59 7.34 25.60 0.19 -27.41 16 8 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 9 C 0.08 3.90 1.30 -12.28 -0.02 3.88 16 10 H 0.04 2.16 6.22 -2.39 -0.01 2.14 16 11 C -0.06 -2.87 3.74 -19.77 -0.07 -2.95 16 12 C -0.12 -4.98 8.84 22.25 0.20 -4.78 16 13 C -0.14 -4.57 10.04 22.28 0.22 -4.34 16 14 C -0.13 -4.25 10.04 22.26 0.22 -4.02 16 15 C -0.16 -5.89 9.99 22.37 0.22 -5.67 16 16 C 0.08 3.32 6.39 22.51 0.14 3.46 16 17 O -0.50 -21.80 12.27 -92.40 -1.13 -22.94 16 18 C -0.08 -3.00 2.28 -10.07 -0.02 -3.02 16 19 C -0.10 -3.92 5.77 31.67 0.18 -3.74 16 20 C -0.12 -3.42 6.91 31.89 0.22 -3.20 16 21 C -0.12 -3.29 6.83 31.69 0.22 -3.07 16 22 C -0.11 -3.76 6.03 31.34 0.19 -3.57 16 23 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 24 H 0.11 4.46 7.60 -2.91 -0.02 4.44 16 25 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.38 12.93 9.06 -74.06 -0.67 12.26 16 29 H 0.05 1.91 7.47 -2.39 -0.02 1.89 16 30 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.60 6.87 -2.39 -0.02 1.58 16 Total: -1.00 -65.12 301.12 3.90 -61.22 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.38 Total: 25.30 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 2.36 Total: -56.96 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.28 Total: -53.47 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -1.13 Total: -22.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.12 3.90 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.915 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds