Wall clock time and date at job start Mon Mar 30 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38291 * 119.94533 * 2 1 4 4 C 1.38117 * 120.05662 * 180.02562 * 3 2 1 5 5 C 1.38758 * 119.94697 * 359.68027 * 4 3 2 6 6 O 1.35897 * 120.05850 * 180.32100 * 5 4 3 7 7 C 1.42903 * 117.00133 * 354.41797 * 6 5 4 8 8 C 1.53001 * 117.49656 * 224.84796 * 7 6 5 9 9 C 1.52994 * 117.49799 * 156.22713 * 7 6 5 10 10 C 1.38715 * 119.88517 * 0.56910 * 5 4 3 11 11 C 1.50694 * 120.02916 * 179.74756 * 10 5 4 12 12 H 1.09004 * 109.46975 * 359.72922 * 11 10 5 13 13 C 1.53002 * 109.46908 * 119.72561 * 11 10 5 14 14 C 1.50700 * 109.47638 * 239.72645 * 11 10 5 15 15 H 1.08007 * 119.99326 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00241 * 180.02562 * 14 11 10 17 17 N 1.31508 * 120.00314 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99747 * 179.72546 * 16 14 11 19 19 H 1.48498 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47232 * 120.00174 * 18 16 14 21 21 H 1.48504 * 109.46889 * 240.00037 * 18 16 14 22 22 C 1.38167 * 119.94263 * 359.47565 * 10 5 4 23 23 H 1.09006 * 109.46823 * 269.97840 * 1 2 3 24 24 H 1.08994 * 109.47186 * 29.97777 * 1 2 3 25 25 H 1.09000 * 109.47023 * 149.98205 * 1 2 3 26 26 H 1.07993 * 119.97161 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.02929 * 179.97438 * 4 3 2 28 28 H 1.08993 * 115.54845 * 10.54992 * 7 6 5 29 29 H 1.09000 * 117.49918 * 0.02562 * 8 7 6 30 30 H 1.08994 * 117.49672 * 145.02016 * 8 7 6 31 31 H 1.09000 * 117.49749 * 214.97677 * 9 7 6 32 32 H 1.09005 * 117.50265 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47007 * 180.02562 * 13 11 10 34 34 H 1.09004 * 109.47223 * 299.99879 * 13 11 10 35 35 H 1.08990 * 109.47075 * 60.00154 * 13 11 10 36 36 H 0.96993 * 120.00564 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97297 * 180.25030 * 22 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 -0.0005 5 6 4.2734 0.0000 0.0056 6 8 5.6324 0.0000 0.0117 7 6 6.2817 1.2670 -0.1125 8 6 7.4641 1.3630 -1.0787 9 6 7.7066 1.3868 0.4317 10 6 3.5787 -1.2006 0.0004 11 6 4.3303 -2.5068 0.0013 12 1 5.4022 -2.3091 0.0015 13 6 3.9591 -3.3078 1.2509 14 6 3.9655 -3.2973 -1.2288 15 1 3.2602 -2.8938 -1.9403 16 6 4.5320 -4.5353 -1.4458 17 7 5.3912 -5.0263 -0.5796 18 14 4.0739 -5.5184 -2.9667 19 1 3.0895 -4.7529 -3.7731 20 1 5.2914 -5.7697 -3.7790 21 1 3.4761 -6.8146 -2.5568 22 6 2.1970 -1.1979 0.0000 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6559 2.1328 0.0004 27 1 4.1171 2.1371 -0.0010 28 1 5.6334 2.1384 -0.0218 29 1 7.7464 0.4600 -1.6200 30 1 7.5937 2.2978 -1.6240 31 1 7.9958 2.3373 0.8801 32 1 8.1490 0.4992 0.8841 33 1 4.5031 -4.2524 1.2519 34 1 4.2231 -2.7361 2.1407 35 1 2.8873 -3.5054 1.2507 36 1 5.7900 -5.8971 -0.7325 37 1 1.6557 -2.1324 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:13 Heat of formation + Delta-G solvation = 7.337794 kcal Electronic energy + Delta-G solvation = -17778.058752 eV Core-core repulsion = 15100.404323 eV Total energy + Delta-G solvation = -2677.654429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77080 -37.72291 -35.04659 -34.38895 -31.56649 -31.00669 -28.23921 -25.93279 -25.04866 -23.53271 -22.31497 -22.00050 -20.18416 -19.36634 -17.81653 -16.25582 -15.64299 -14.88087 -14.70498 -14.30182 -14.17603 -13.80837 -13.35948 -13.16935 -12.87217 -12.50295 -12.10298 -11.57463 -11.50662 -11.43795 -11.26073 -11.08670 -10.89362 -10.73090 -10.62819 -10.33382 -10.16960 -9.96785 -9.63003 -9.26351 -8.90432 -8.29361 -8.01124 -7.22596 -5.93523 -3.99397 2.01719 2.10814 3.32282 3.40172 3.44853 3.53436 3.92643 4.40791 4.53764 4.79078 5.05112 5.19579 5.31401 5.35550 5.38838 5.46756 5.67434 5.68500 5.72099 5.93095 5.95490 6.04389 6.22633 6.23891 6.36716 6.42942 6.71953 6.87539 6.92615 7.02243 7.23784 7.28387 7.32786 7.58449 7.79798 8.03236 8.14133 8.20503 8.48194 9.03485 9.64035 11.12237 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.008819 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.592084 B = 3174.099107 C = 4405.941194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.132 4.132 3 C -0.109 4.109 4 C -0.212 4.212 5 C 0.112 3.888 6 O -0.269 6.269 7 C 0.004 3.996 8 C -0.187 4.187 9 C -0.176 4.176 10 C -0.055 4.055 11 C 0.076 3.924 12 H 0.044 0.956 13 C -0.130 4.130 14 C -0.502 4.502 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.076 4.076 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.026 0.974 36 H 0.259 0.741 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 12.522 1.864 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.127 4.127 4 C -0.230 4.230 5 C 0.067 3.933 6 O -0.182 6.182 7 C -0.053 4.053 8 C -0.224 4.224 9 C -0.213 4.213 10 C -0.056 4.056 11 C 0.057 3.943 12 H 0.062 0.938 13 C -0.188 4.188 14 C -0.540 4.540 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.094 4.094 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.915 12.188 1.909 12.485 hybrid contribution -0.172 -0.317 -0.892 0.962 sum -2.087 11.871 1.017 12.096 Atomic orbital electron populations 1.20647 0.91980 1.01964 1.01406 1.19775 0.95558 0.93330 1.04532 1.20494 0.93089 0.96949 1.02211 1.21005 0.95144 0.96566 1.10303 1.18900 0.81741 0.93880 0.98746 1.86166 1.16912 1.27938 1.87176 1.22952 0.89265 0.87807 1.05311 1.23421 1.02210 1.03835 0.92981 1.23306 0.97603 1.03619 0.96734 1.20106 0.93338 0.94753 0.97385 1.17763 0.95475 0.86411 0.94622 0.93799 1.21782 0.99414 1.02320 0.95284 1.21169 1.25422 1.01703 1.05754 0.92566 1.24945 0.95056 0.97564 0.96415 1.69899 1.29427 1.18332 1.35197 0.86568 0.78306 0.80023 0.83326 1.19785 1.21094 1.21048 1.20806 0.93123 0.97156 0.98293 0.92091 0.92478 0.91889 0.87062 0.86345 0.86293 0.87666 0.88297 0.88117 0.87793 0.89663 0.97412 0.95442 0.93126 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.01 36.00 0.36 -1.04 16 2 C -0.13 -2.29 5.88 -104.60 -0.62 -2.91 16 3 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 4 C -0.21 -3.69 9.19 -39.43 -0.36 -4.06 16 5 C 0.11 2.34 6.65 -39.21 -0.26 2.08 16 6 O -0.27 -5.59 9.16 -19.42 -0.18 -5.76 16 7 C 0.00 0.06 6.21 -26.73 -0.17 -0.11 16 8 C -0.19 -2.52 10.48 -26.73 -0.28 -2.80 16 9 C -0.18 -2.27 10.48 -26.74 -0.28 -2.55 16 10 C -0.06 -1.27 4.75 -104.47 -0.50 -1.76 16 11 C 0.08 1.98 2.44 -92.93 -0.23 1.76 16 12 H 0.04 1.27 6.99 -51.93 -0.36 0.91 16 13 C -0.13 -3.27 8.78 37.16 0.33 -2.95 16 14 C -0.50 -14.09 8.24 -34.44 -0.28 -14.38 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C -0.08 -1.56 8.36 -39.60 -0.33 -1.89 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 1.71 5.52 -52.48 -0.29 1.42 16 28 H 0.12 1.57 5.33 -51.93 -0.28 1.30 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.03 0.64 7.39 -51.93 -0.38 0.26 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.13 2.63 7.58 -52.49 -0.40 2.23 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -30.29 305.67 -8.42 -38.71 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.36 Total: 2.18 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -3.09 Total: -31.15 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.63 Total: -25.20 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.18 Total: -5.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.29 -8.42 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.048 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds