Wall clock time and date at job start Mon Mar 30 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38291 * 119.94533 * 2 1 4 4 C 1.38117 * 120.05662 * 180.02562 * 3 2 1 5 5 C 1.38758 * 119.94697 * 359.68027 * 4 3 2 6 6 O 1.35897 * 120.05850 * 180.32100 * 5 4 3 7 7 C 1.42903 * 117.00133 * 354.41797 * 6 5 4 8 8 C 1.53001 * 117.49656 * 224.84796 * 7 6 5 9 9 C 1.52994 * 117.49799 * 156.22713 * 7 6 5 10 10 C 1.38715 * 119.88517 * 0.56910 * 5 4 3 11 11 C 1.50694 * 120.02916 * 179.74756 * 10 5 4 12 12 H 1.09004 * 109.46975 * 359.72922 * 11 10 5 13 13 C 1.53002 * 109.46908 * 119.72561 * 11 10 5 14 14 C 1.50700 * 109.47638 * 239.72645 * 11 10 5 15 15 H 1.08007 * 119.99326 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00241 * 180.02562 * 14 11 10 17 17 N 1.31508 * 120.00314 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99747 * 179.72546 * 16 14 11 19 19 H 1.48498 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47232 * 120.00174 * 18 16 14 21 21 H 1.48504 * 109.46889 * 240.00037 * 18 16 14 22 22 C 1.38167 * 119.94263 * 359.47565 * 10 5 4 23 23 H 1.09006 * 109.46823 * 269.97840 * 1 2 3 24 24 H 1.08994 * 109.47186 * 29.97777 * 1 2 3 25 25 H 1.09000 * 109.47023 * 149.98205 * 1 2 3 26 26 H 1.07993 * 119.97161 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.02929 * 179.97438 * 4 3 2 28 28 H 1.08993 * 115.54845 * 10.54992 * 7 6 5 29 29 H 1.09000 * 117.49918 * 0.02562 * 8 7 6 30 30 H 1.08994 * 117.49672 * 145.02016 * 8 7 6 31 31 H 1.09000 * 117.49749 * 214.97677 * 9 7 6 32 32 H 1.09005 * 117.50265 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47007 * 180.02562 * 13 11 10 34 34 H 1.09004 * 109.47223 * 299.99879 * 13 11 10 35 35 H 1.08990 * 109.47075 * 60.00154 * 13 11 10 36 36 H 0.96993 * 120.00564 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97297 * 180.25030 * 22 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 -0.0005 5 6 4.2734 0.0000 0.0056 6 8 5.6324 0.0000 0.0117 7 6 6.2817 1.2670 -0.1125 8 6 7.4641 1.3630 -1.0787 9 6 7.7066 1.3868 0.4317 10 6 3.5787 -1.2006 0.0004 11 6 4.3303 -2.5068 0.0013 12 1 5.4022 -2.3091 0.0015 13 6 3.9591 -3.3078 1.2509 14 6 3.9655 -3.2973 -1.2288 15 1 3.2602 -2.8938 -1.9403 16 6 4.5320 -4.5353 -1.4458 17 7 5.3912 -5.0263 -0.5796 18 14 4.0739 -5.5184 -2.9667 19 1 3.0895 -4.7529 -3.7731 20 1 5.2914 -5.7697 -3.7790 21 1 3.4761 -6.8146 -2.5568 22 6 2.1970 -1.1979 0.0000 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6559 2.1328 0.0004 27 1 4.1171 2.1371 -0.0010 28 1 5.6334 2.1384 -0.0218 29 1 7.7464 0.4600 -1.6200 30 1 7.5937 2.2978 -1.6240 31 1 7.9958 2.3373 0.8801 32 1 8.1490 0.4992 0.8841 33 1 4.5031 -4.2524 1.2519 34 1 4.2231 -2.7361 2.1407 35 1 2.8873 -3.5054 1.2507 36 1 5.7900 -5.8971 -0.7325 37 1 1.6557 -2.1324 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:12 Heat of formation + Delta-G solvation = -8.674478 kcal Electronic energy + Delta-G solvation = -17778.753096 eV Core-core repulsion = 15100.404323 eV Total energy + Delta-G solvation = -2678.348773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19336 -39.06364 -36.46000 -36.12667 -33.46220 -32.36866 -29.98817 -27.24938 -27.19044 -24.93007 -23.61955 -23.35532 -21.51785 -21.06574 -19.19750 -18.31975 -17.10145 -16.69205 -16.05062 -15.69041 -15.65792 -15.18998 -14.67464 -14.64080 -14.35254 -14.26939 -13.52966 -13.36672 -13.01272 -12.89423 -12.70393 -12.62196 -12.47022 -12.38363 -12.25344 -12.16065 -11.85497 -11.45826 -11.00690 -10.98154 -10.81478 -10.46630 -9.53687 -8.68830 -8.08864 -6.23441 0.57208 0.65540 1.37838 1.38769 1.51248 2.28228 2.41532 2.78870 3.04116 3.18183 3.64721 3.98840 4.00950 4.07234 4.13499 4.21996 4.41569 4.58501 4.63332 4.69506 4.84381 4.86859 4.92860 4.95471 4.96881 5.06504 5.19141 5.22357 5.23363 5.38623 5.48092 5.52706 5.61704 5.82484 6.04311 6.06932 6.12638 6.37074 6.72648 6.86196 7.43547 8.95730 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.008819 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.592084 B = 3174.099107 C = 4405.941194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.131 4.131 3 C -0.098 4.098 4 C -0.204 4.204 5 C 0.091 3.909 6 O -0.309 6.309 7 C -0.026 4.026 8 C -0.184 4.184 9 C -0.162 4.162 10 C -0.098 4.098 11 C 0.080 3.920 12 H 0.000 1.000 13 C -0.118 4.118 14 C -0.517 4.517 15 H 0.048 0.952 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.092 4.092 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 15.329 1.342 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C -0.116 4.116 4 C -0.222 4.222 5 C 0.047 3.953 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.221 4.221 9 C -0.199 4.199 10 C -0.099 4.099 11 C 0.062 3.938 12 H 0.018 0.982 13 C -0.176 4.176 14 C -0.555 4.555 15 H 0.067 0.933 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.110 4.110 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.174 0.826 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.380 15.002 1.391 15.441 hybrid contribution 0.316 -1.101 -0.701 1.343 sum -3.064 13.901 0.689 14.251 Atomic orbital electron populations 1.20710 0.88988 1.03212 1.02825 1.20184 0.97716 0.92401 1.02814 1.21037 0.92799 0.98261 0.99458 1.21382 0.95873 0.96430 1.08538 1.19084 0.82156 0.94527 0.99535 1.86104 1.17292 1.31375 1.87537 1.23463 0.90319 0.86782 1.07665 1.23496 1.00841 1.04309 0.93449 1.23421 0.95394 1.04669 0.96402 1.19917 0.94440 0.94049 1.01450 1.17500 0.93426 0.88636 0.94259 0.98153 1.21606 0.99286 1.01027 0.95656 1.21414 1.25314 1.02309 1.06467 0.93327 1.25762 0.94951 0.98592 0.99419 1.70038 1.30250 1.18698 1.36860 0.85542 0.78105 0.78625 0.79640 1.19219 1.20698 1.20077 1.20787 0.92293 0.98297 0.99596 0.90463 0.89763 0.92166 0.82565 0.82920 0.83640 0.90342 0.84757 0.84210 0.89759 0.92253 0.96475 0.94741 0.92989 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 10.01 71.23 0.71 -1.68 16 2 C -0.13 -4.26 5.88 -19.85 -0.12 -4.38 16 3 C -0.10 -2.83 9.69 22.25 0.22 -2.61 16 4 C -0.20 -6.60 9.19 22.37 0.21 -6.40 16 5 C 0.09 3.88 6.65 22.51 0.15 4.03 16 6 O -0.31 -13.33 9.16 -92.40 -0.85 -14.17 16 7 C -0.03 -0.79 6.21 30.59 0.19 -0.60 16 8 C -0.18 -4.77 10.48 30.59 0.32 -4.45 16 9 C -0.16 -3.98 10.48 30.59 0.32 -3.66 16 10 C -0.10 -4.67 4.75 -19.77 -0.09 -4.76 16 11 C 0.08 4.48 2.44 -12.29 -0.03 4.45 16 12 H 0.00 0.02 6.99 -2.38 -0.02 0.00 16 13 C -0.12 -6.27 8.78 71.98 0.63 -5.64 16 14 C -0.52 -30.38 8.24 25.60 0.21 -30.17 16 15 H 0.05 2.85 7.60 -2.91 -0.02 2.83 16 16 C 0.01 0.63 5.30 84.65 0.45 1.08 16 17 N -0.92 -55.64 11.32 21.45 0.24 -55.40 16 18 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.09 -3.82 8.36 22.26 0.19 -3.63 16 23 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 25 H 0.06 1.46 8.08 -2.39 -0.02 1.45 16 26 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.15 3.76 5.52 -2.91 -0.02 3.74 16 28 H 0.15 3.41 5.33 -2.39 -0.01 3.40 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 34 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.03 1.71 7.39 -2.39 -0.02 1.69 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.11 4.87 7.58 -2.91 -0.02 4.85 16 Total: -1.00 -70.27 305.67 5.83 -64.45 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.05 Total: 16.06 kcal Atomic # 6 Polarization: -61.80 SS G_CDS: 3.35 Total: -58.45 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.24 Total: -55.40 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.85 Total: -14.17 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.27 5.83 -64.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.774 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds