Wall clock time and date at job start Mon Mar 30 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47225 * 270.00281 * 3 2 1 5 5 H 1.48500 * 109.46816 * 30.00335 * 3 2 1 6 6 H 1.48502 * 109.47281 * 149.99936 * 3 2 1 7 7 C 1.37876 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00177 * 188.06473 * 7 2 1 9 9 C 1.50700 * 120.00144 * 8.06603 * 7 2 1 10 10 H 1.09002 * 109.47481 * 182.68740 * 9 7 2 11 11 C 1.50703 * 109.47371 * 62.68378 * 9 7 2 12 12 C 1.38264 * 119.94217 * 273.46041 * 11 9 7 13 13 C 1.38150 * 120.05168 * 179.72571 * 12 11 9 14 14 C 1.38736 * 119.94362 * 0.53986 * 13 12 11 15 15 O 1.35896 * 120.05363 * 179.75396 * 14 13 12 16 16 C 1.38733 * 119.88646 * 359.73159 * 14 13 12 17 17 C 1.38143 * 119.94529 * 359.97438 * 16 14 13 18 18 C 1.53003 * 109.47115 * 302.68681 * 9 7 2 19 19 C 1.54272 * 110.03162 * 297.90592 * 18 9 7 20 20 C 1.54963 * 104.15940 * 217.13657 * 19 18 9 21 21 C 1.54883 * 102.77771 * 37.88693 * 20 19 18 22 22 C 1.53878 * 110.03280 * 180.68948 * 18 9 7 23 23 H 0.97007 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.97424 * 359.97438 * 12 11 9 25 25 H 1.07998 * 120.02685 * 180.27007 * 13 12 11 26 26 H 0.96708 * 113.99900 * 269.98017 * 15 14 13 27 27 H 1.08001 * 120.02504 * 179.97438 * 16 14 13 28 28 H 1.07997 * 119.96963 * 180.02562 * 17 16 14 29 29 H 1.08996 * 110.01834 * 59.29492 * 18 9 7 30 30 H 1.09000 * 110.48445 * 335.78588 * 19 18 9 31 31 H 1.08997 * 110.48393 * 98.42722 * 19 18 9 32 32 H 1.09005 * 110.71764 * 279.57295 * 20 19 18 33 33 H 1.09002 * 110.92421 * 156.29623 * 20 19 18 34 34 H 1.09003 * 110.48668 * 203.40249 * 21 20 19 35 35 H 1.09008 * 110.59757 * 80.81652 * 21 20 19 36 36 H 1.08999 * 110.02790 * 238.56364 * 22 18 9 37 37 H 1.08997 * 110.03137 * 359.95023 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0763 -1.1988 0.1307 9 6 1.2621 -2.4926 -0.1842 10 1 1.9618 -3.3250 -0.1090 11 6 0.6061 -2.5088 -1.5409 12 6 -0.6499 -1.9551 -1.7068 13 6 -1.2509 -1.9636 -2.9507 14 6 -0.5978 -2.5383 -4.0314 15 8 -1.1891 -2.5524 -5.2550 16 6 0.6600 -3.0981 -3.8610 17 6 1.2593 -3.0817 -2.6165 18 6 0.1920 -2.6263 0.9011 19 6 0.8540 -2.6640 2.2941 20 6 -0.0030 -3.6777 3.0938 21 6 -0.3334 -4.7579 2.0342 22 6 -0.5630 -3.9569 0.7359 23 1 -0.4851 0.8401 0.0004 24 1 -1.1599 -1.5121 -0.8642 25 1 -2.2302 -1.5272 -3.0807 26 1 -1.7324 -3.3351 -5.4203 27 1 1.1703 -3.5465 -4.7007 28 1 2.2387 -3.5170 -2.4835 29 1 -0.5059 -1.7912 0.8420 30 1 1.8841 -3.0122 2.2176 31 1 0.8167 -1.6798 2.7609 32 1 -0.9142 -3.2062 3.4620 33 1 0.5684 -4.1062 3.9172 34 1 -1.2366 -5.3012 2.3121 35 1 0.5033 -5.4464 1.9147 36 1 -1.6274 -3.7675 0.5975 37 1 -0.1677 -4.5070 -0.1180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:36 Heat of formation + Delta-G solvation = -49.304913 kcal Electronic energy + Delta-G solvation = -18363.437804 eV Core-core repulsion = 15683.327163 eV Total energy + Delta-G solvation = -2680.110641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64323 -39.12735 -37.27226 -35.07832 -32.31722 -31.56812 -29.47912 -28.83933 -27.60816 -24.41201 -23.37510 -22.08087 -21.15373 -19.95976 -19.11901 -18.22475 -17.03983 -16.50202 -16.19427 -16.03036 -15.74219 -15.23911 -14.72978 -14.39062 -13.97542 -13.90556 -13.29796 -13.08035 -12.88150 -12.85078 -12.67647 -12.41762 -11.98331 -11.73051 -11.63880 -11.54396 -11.29778 -11.28024 -11.18818 -10.77894 -10.51815 -10.29909 -9.55607 -8.95248 -7.92520 -6.12280 0.69335 0.80688 1.39175 1.44159 1.49001 2.44972 3.12205 3.24318 3.53560 4.08178 4.14709 4.15984 4.27742 4.32396 4.66634 4.76910 4.81782 4.93549 5.00516 5.02037 5.03655 5.18932 5.20966 5.28267 5.30991 5.34220 5.46529 5.54576 5.65152 5.66523 5.71340 5.77427 5.92425 6.05747 6.22731 6.33933 6.40974 6.53627 6.90010 7.03585 7.53739 8.94675 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.011126 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.081873 B = 2516.040109 C = 3792.019834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.040 3.960 3 Si 0.930 3.070 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.043 0.957 9 C 0.082 3.918 10 H 0.020 0.980 11 C -0.050 4.050 12 C -0.076 4.076 13 C -0.174 4.174 14 C 0.067 3.933 15 O -0.510 6.510 16 C -0.161 4.161 17 C -0.134 4.134 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.118 4.118 23 H 0.259 0.741 24 H 0.142 0.858 25 H 0.121 0.879 26 H 0.400 0.600 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -7.845 -0.647 8.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.758 3.242 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.061 0.939 9 C 0.063 3.937 10 H 0.039 0.961 11 C -0.050 4.050 12 C -0.095 4.095 13 C -0.192 4.192 14 C 0.023 3.977 15 O -0.322 6.322 16 C -0.179 4.179 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.155 4.155 23 H 0.069 0.931 24 H 0.159 0.841 25 H 0.139 0.861 26 H 0.258 0.742 27 H 0.152 0.848 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.039 -7.167 -0.705 7.817 hybrid contribution 0.419 0.934 -0.209 1.045 sum -2.620 -6.233 -0.914 6.822 Atomic orbital electron populations 1.69740 1.06098 1.26174 1.49770 1.25292 0.95445 1.00642 0.94744 0.85991 0.79294 0.81457 0.77465 1.21571 1.20846 1.19874 1.21211 0.93251 0.92017 1.49191 0.93918 1.17968 0.93005 0.94116 0.88589 0.96146 1.20517 0.93327 0.93721 0.97469 1.21579 0.95485 0.95180 0.97215 1.21588 1.01062 1.03430 0.93162 1.18407 0.93247 1.01536 0.84492 1.84760 1.67805 1.48554 1.31077 1.21331 0.96159 1.02890 0.97568 1.21064 0.99900 1.01580 0.92636 1.21891 0.98073 0.96820 0.93780 1.22077 0.98018 0.97224 0.95988 1.22508 0.99414 0.96400 0.97446 1.22306 1.01139 0.97170 0.94673 1.22236 0.99131 0.96796 0.97360 0.93079 0.84061 0.86139 0.74236 0.84759 0.86261 0.88953 0.93747 0.94768 0.92078 0.91029 0.90949 0.91854 0.93467 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.27 7.76 21.45 0.17 -45.10 16 2 C 0.04 2.04 5.14 84.66 0.43 2.48 16 3 Si 0.93 42.74 29.54 68.60 2.03 44.76 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.52 -26.99 8.06 25.60 0.21 -26.78 16 8 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 9 C 0.08 3.83 1.62 -12.28 -0.02 3.81 16 10 H 0.02 0.94 8.05 -2.39 -0.02 0.92 16 11 C -0.05 -2.25 3.73 -19.85 -0.07 -2.32 16 12 C -0.08 -3.41 7.34 22.25 0.16 -3.24 16 13 C -0.17 -7.02 9.99 22.37 0.22 -6.79 16 14 C 0.07 2.51 6.70 22.51 0.15 2.66 16 15 O -0.51 -16.01 13.50 -92.38 -1.25 -17.26 16 16 C -0.16 -5.97 9.99 22.37 0.22 -5.75 16 17 C -0.13 -5.48 9.68 22.25 0.22 -5.27 16 18 C -0.09 -3.72 1.73 -10.07 -0.02 -3.74 16 19 C -0.10 -3.80 5.75 31.70 0.18 -3.62 16 20 C -0.12 -3.77 6.91 31.91 0.22 -3.55 16 21 C -0.12 -3.46 6.83 31.67 0.22 -3.25 16 22 C -0.12 -4.27 5.66 31.32 0.18 -4.09 16 23 H 0.26 13.04 8.31 -92.70 -0.77 12.26 16 24 H 0.14 6.78 4.78 -2.91 -0.01 6.77 16 25 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 26 H 0.40 8.01 9.06 -74.05 -0.67 7.34 16 27 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 28 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 29 H 0.09 4.48 4.49 -2.39 -0.01 4.47 16 30 H 0.04 1.80 7.84 -2.39 -0.02 1.78 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.70 7.13 -2.39 -0.02 1.68 16 Total: -1.00 -56.28 291.78 3.64 -52.64 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.39 Total: 24.40 kcal Atomic # 6 Polarization: -61.76 SS G_CDS: 2.30 Total: -59.46 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.17 Total: -45.10 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.25 Total: -17.26 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -56.28 3.64 -52.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.339 kcal (2) G-P(sol) polarization free energy of solvation -56.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds