Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 C 1.50700 * 109.47189 * 120.00321 * 2 1 3 5 5 C 1.38298 * 120.00335 * 299.97497 * 4 2 1 6 6 C 1.37962 * 119.95353 * 180.08691 * 5 4 2 7 7 C 1.39151 * 120.21664 * 0.02562 * 6 5 4 8 8 C 1.38369 * 119.69841 * 359.87440 * 7 6 5 9 9 C 1.38100 * 120.00986 * 119.99736 * 4 2 1 10 10 C 1.50764 * 121.40458 * 180.23436 * 8 7 6 11 11 C 1.53082 * 109.68481 * 342.17171 * 10 8 7 12 12 H 1.09001 * 109.69001 * 288.45476 * 11 10 8 13 13 C 1.50692 * 109.69883 * 167.89893 * 11 10 8 14 14 H 1.07999 * 120.00473 * 355.01749 * 13 11 10 15 15 C 1.37875 * 120.00081 * 175.02122 * 13 11 10 16 16 N 1.31511 * 120.00351 * 163.69526 * 15 13 11 17 17 Si 1.86809 * 119.99981 * 343.69126 * 15 13 11 18 18 H 1.48494 * 109.47430 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.46947 * 300.00604 * 17 15 13 20 20 H 1.48506 * 109.46771 * 60.00186 * 17 15 13 21 21 C 1.53404 * 108.33107 * 48.17144 * 11 10 8 22 22 O 1.35848 * 118.49706 * 179.59693 * 7 6 5 23 23 H 1.09003 * 109.47200 * 299.99633 * 1 2 3 24 24 H 1.08993 * 109.47091 * 60.00057 * 1 2 3 25 25 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46797 * 240.00046 * 2 1 3 27 27 H 1.08996 * 109.47516 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46946 * 300.00210 * 3 2 1 29 29 H 1.09001 * 109.46929 * 59.99312 * 3 2 1 30 30 H 1.08000 * 120.02029 * 0.06886 * 5 4 2 31 31 H 1.07999 * 119.89273 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.84163 * 359.95468 * 9 4 2 33 33 H 1.09000 * 109.43538 * 222.10645 * 10 8 7 34 34 H 1.09002 * 109.40242 * 102.20985 * 10 8 7 35 35 H 0.96993 * 120.00216 * 354.57187 * 16 15 13 36 36 H 1.08999 * 109.68245 * 55.03965 * 21 11 10 37 37 H 1.09008 * 109.67578 * 175.59089 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6987 -0.2378 2.4866 6 6 2.1607 -0.8880 3.6123 7 6 2.9624 -2.0186 3.4886 8 6 3.2928 -2.4903 2.2305 9 6 2.8263 -1.8333 1.1039 10 6 4.1543 -3.7146 2.0518 11 6 4.9047 -4.0114 3.3527 12 1 5.6817 -3.2629 3.5075 13 6 5.5271 -5.3818 3.2787 14 1 5.3353 -6.0168 2.4264 15 6 6.3413 -5.8252 4.2992 16 7 6.6239 -7.1051 4.4061 17 14 7.0432 -4.6077 5.5300 18 1 7.8797 -5.3318 6.5205 19 1 7.8755 -3.6064 4.8162 20 1 5.9316 -3.9173 6.2322 21 6 3.9003 -3.9614 4.5111 22 8 3.4047 -2.6265 4.6201 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.0773 0.6398 2.5862 31 1 1.8999 -0.5178 4.5928 32 1 3.0851 -2.2006 0.1218 33 1 4.8725 -3.5390 1.2508 34 1 3.5245 -4.5661 1.7941 35 1 6.1980 -7.7467 3.8165 36 1 3.0744 -4.6439 4.3107 37 1 4.3960 -4.2466 5.4392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = -58.855218 kcal Electronic energy + Delta-G solvation = -17745.178530 eV Core-core repulsion = 15064.653757 eV Total energy + Delta-G solvation = -2680.524773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61289 -39.20061 -36.24364 -35.75173 -34.10014 -31.57637 -30.38774 -27.90222 -26.92641 -26.49240 -24.07189 -23.26951 -21.77782 -19.90527 -19.82305 -18.59397 -17.53830 -16.63186 -16.13872 -15.71579 -15.38027 -15.28425 -14.99135 -14.75480 -14.36403 -14.22478 -13.92861 -13.79971 -13.56649 -13.08546 -12.98298 -12.78537 -12.31779 -12.23123 -11.85669 -11.84855 -11.74017 -11.55670 -11.45797 -11.27876 -10.85550 -10.60772 -9.69318 -8.91594 -8.81981 -6.48483 0.40985 0.49133 1.42176 1.46436 1.68232 2.40502 2.46574 2.80647 2.94413 3.73432 3.85923 3.90644 4.05305 4.16746 4.21727 4.37222 4.40124 4.45777 4.51631 4.62422 4.65597 4.76983 4.80839 4.88638 4.99874 5.06266 5.09434 5.18213 5.21744 5.32082 5.35801 5.46594 5.46939 5.60135 5.72981 5.80617 5.95240 6.00355 6.47002 6.57433 7.27952 8.54793 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042291 B = 0.005595 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.922224 B = 5002.971912 C = 5249.117663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.156 4.156 7 C 0.099 3.901 8 C -0.168 4.168 9 C -0.093 4.093 10 C -0.056 4.056 11 C -0.013 4.013 12 H 0.030 0.970 13 C -0.601 4.601 14 H 0.028 0.972 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 1.073 2.927 18 H -0.282 1.282 19 H -0.268 1.268 20 H -0.246 1.246 21 C 0.060 3.940 22 O -0.338 6.338 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.257 0.743 36 H 0.049 0.951 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 17.435 -6.402 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.110 4.110 5 C -0.099 4.099 6 C -0.174 4.174 7 C 0.055 3.945 8 C -0.169 4.169 9 C -0.111 4.111 10 C -0.094 4.094 11 C -0.033 4.033 12 H 0.048 0.952 13 C -0.639 4.639 14 H 0.047 0.953 15 C -0.210 4.210 16 N -0.564 5.564 17 Si 0.895 3.105 18 H -0.207 1.207 19 H -0.193 1.193 20 H -0.171 1.171 21 C -0.014 4.014 22 O -0.253 6.253 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.790 17.610 -4.930 21.233 hybrid contribution -0.559 -1.425 -1.523 2.159 sum -11.350 16.185 -6.453 20.795 Atomic orbital electron populations 1.21844 0.93445 1.01733 1.02806 1.20087 0.96555 0.96249 0.93949 1.21847 1.00722 0.94477 1.02804 1.19997 0.99046 0.95940 0.95988 1.20975 0.98873 0.99612 0.90392 1.20820 0.99736 0.95895 1.00981 1.19202 0.95369 0.94658 0.85315 1.20166 1.03019 1.00360 0.93368 1.20992 0.97438 0.95421 0.97283 1.20326 0.96673 0.93871 0.98481 1.19553 0.94054 0.96555 0.93096 0.95207 1.22024 1.33675 1.00890 1.07307 0.95328 1.27088 0.94657 0.99238 1.00002 1.70943 1.44356 1.02311 1.38808 0.83694 0.77769 0.73907 0.75129 1.20737 1.19344 1.17134 1.23627 0.96843 0.79275 1.01694 1.85858 1.77612 1.30319 1.31462 0.91877 0.90933 0.93534 0.90571 0.93516 0.90934 0.91872 0.82676 0.84198 0.85199 0.91065 0.92423 0.93390 0.93299 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.01 71.98 0.65 -1.48 16 2 C -0.05 -0.90 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -2.14 9.01 71.98 0.65 -1.50 16 4 C -0.11 -2.72 4.78 -19.88 -0.10 -2.81 16 5 C -0.08 -1.95 8.71 22.22 0.19 -1.76 16 6 C -0.16 -4.68 9.94 22.42 0.22 -4.46 16 7 C 0.10 3.78 6.47 22.52 0.15 3.92 16 8 C -0.17 -6.32 5.75 -19.75 -0.11 -6.43 16 9 C -0.09 -2.84 9.29 22.30 0.21 -2.63 16 10 C -0.06 -2.40 5.14 29.90 0.15 -2.25 16 11 C -0.01 -0.65 1.88 -11.38 -0.02 -0.67 16 12 H 0.03 1.48 6.84 -2.39 -0.02 1.46 16 13 C -0.60 -34.07 8.82 25.60 0.23 -33.84 16 14 H 0.03 1.75 8.00 -2.91 -0.02 1.73 16 15 C -0.01 -0.57 5.34 84.65 0.45 -0.12 16 16 N -0.93 -57.38 13.69 21.45 0.29 -57.09 16 17 Si 1.07 50.03 26.32 68.60 1.81 51.83 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.25 -10.44 5.66 99.48 0.56 -9.88 16 21 C 0.06 2.74 5.99 72.12 0.43 3.18 16 22 O -0.34 -14.34 10.27 -91.84 -0.94 -15.28 16 23 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.35 7.87 -2.39 -0.02 1.33 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.87 7.39 -2.39 -0.02 0.86 16 30 H 0.16 2.66 7.11 -2.91 -0.02 2.64 16 31 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.13 3.53 7.94 -2.91 -0.02 3.51 16 33 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 35 H 0.26 16.01 8.73 -92.71 -0.81 15.20 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 4.55 4.84 -2.38 -0.01 4.54 16 Total: -1.00 -64.23 294.46 5.08 -59.16 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.86 Total: 13.17 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.06 Total: -51.79 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.29 Total: -57.09 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.94 Total: -15.28 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.81 Total: 51.83 kcal Total: -64.23 5.08 -59.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.301 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds