Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 C 1.50699 * 109.47271 * 119.99902 * 2 1 3 5 5 C 1.38014 * 119.89086 * 300.00393 * 4 2 1 6 6 C 1.38250 * 119.95496 * 180.02562 * 5 4 2 7 7 C 1.38148 * 119.98610 * 359.90045 * 6 5 4 8 8 C 1.38458 * 120.31390 * 0.26010 * 7 6 5 9 9 C 1.38415 * 119.83156 * 359.65113 * 8 7 6 10 10 O 1.35847 * 121.79336 * 179.83184 * 9 8 7 11 11 C 1.42819 * 117.86881 * 17.55330 * 10 9 8 12 12 C 1.53402 * 108.39617 * 310.82952 * 11 10 9 13 13 H 1.09003 * 109.69178 * 304.95087 * 12 11 10 14 14 C 1.50692 * 109.70267 * 184.39869 * 12 11 10 15 15 H 1.08000 * 120.00207 * 240.00048 * 14 12 11 16 16 C 1.37873 * 120.00038 * 59.99282 * 14 12 11 17 17 N 1.31514 * 120.00066 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99920 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47026 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47196 * 120.00133 * 18 16 14 21 21 H 1.48504 * 109.46773 * 240.00242 * 18 16 14 22 22 C 1.50773 * 118.76719 * 180.60686 * 8 7 6 23 23 H 1.08997 * 109.47052 * 60.00291 * 1 2 3 24 24 H 1.08999 * 109.46606 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47066 * 299.99514 * 1 2 3 26 26 H 1.09002 * 109.47155 * 240.00331 * 2 1 3 27 27 H 1.08993 * 109.47285 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.47290 * 300.00213 * 3 2 1 29 29 H 1.08999 * 109.47193 * 59.99745 * 3 2 1 30 30 H 1.07997 * 120.02214 * 0.06443 * 5 4 2 31 31 H 1.08003 * 120.00130 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.84014 * 179.97438 * 7 6 5 33 33 H 1.09010 * 109.67921 * 70.55212 * 11 10 9 34 34 H 1.08999 * 109.68508 * 191.06465 * 11 10 9 35 35 H 0.97001 * 119.99892 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.62926 * 77.28144 * 22 8 7 37 37 H 1.09004 * 109.26960 * 317.35520 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6976 -0.2369 2.4829 6 6 2.1582 -0.8873 3.6126 7 6 2.9513 -2.0114 3.4870 8 6 3.2932 -2.4890 2.2332 9 6 2.8320 -1.8411 1.1003 10 8 3.1456 -2.2732 -0.1489 11 6 3.6343 -3.6076 -0.2907 12 6 4.7548 -3.8243 0.7343 13 1 5.5198 -3.0579 0.6097 14 6 5.3655 -5.1880 0.5387 15 1 5.3433 -5.9099 1.3417 16 6 5.9525 -5.5142 -0.6654 17 7 5.9799 -4.6350 -1.6431 18 14 6.7090 -7.2049 -0.9081 19 1 6.5490 -8.0017 0.3348 20 1 6.0263 -7.8960 -2.0312 21 1 8.1536 -7.0605 -1.2205 22 6 4.1490 -3.7266 2.1367 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.0757 0.6406 2.5803 31 1 1.8969 -0.5172 4.5930 32 1 3.3101 -2.5174 4.3711 33 1 2.8263 -4.3159 -0.1066 34 1 4.0250 -3.7504 -1.2982 35 1 6.3932 -4.8644 -2.4902 36 1 3.5396 -4.6092 2.3309 37 1 4.9494 -3.6689 2.8744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = -56.635346 kcal Electronic energy + Delta-G solvation = -18028.412951 eV Core-core repulsion = 15347.984438 eV Total energy + Delta-G solvation = -2680.428513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55710 -38.65896 -36.72126 -35.65872 -33.52712 -31.22151 -30.25394 -27.92915 -27.15824 -26.36069 -24.06080 -23.80299 -21.16025 -20.10057 -18.68140 -18.40782 -17.50482 -16.55750 -16.31809 -15.66395 -15.35105 -15.09014 -14.77220 -14.52512 -14.32003 -14.22203 -14.00077 -13.58535 -13.01955 -12.95237 -12.89085 -12.80448 -12.53215 -12.32826 -12.15272 -11.86525 -11.66902 -11.56258 -11.52495 -11.16396 -10.78601 -10.57358 -9.43337 -8.88032 -8.22161 -6.37658 0.47206 0.62085 1.39550 1.41247 1.53496 2.36590 2.67636 2.91005 3.08562 3.76339 3.94513 4.11143 4.27658 4.29844 4.36986 4.39490 4.43785 4.57163 4.68583 4.72321 4.76131 4.85781 4.92143 4.99602 5.01825 5.08067 5.19092 5.27952 5.38549 5.41421 5.45485 5.60467 5.64938 5.69554 5.74461 5.79998 6.01963 6.19913 6.69614 6.78540 7.32429 8.84805 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032511 B = 0.006324 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.047335 B = 4426.291703 C = 5034.056876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.100 4.100 8 C -0.175 4.175 9 C 0.102 3.898 10 O -0.340 6.340 11 C 0.075 3.925 12 C 0.016 3.984 13 H -0.002 1.002 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.063 4.063 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.266 0.734 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 8.968 7.059 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 C -0.191 4.191 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.168 4.168 7 C -0.118 4.118 8 C -0.176 4.176 9 C 0.056 3.944 10 O -0.255 6.255 11 C 0.001 3.999 12 C -0.003 4.003 13 H 0.016 0.984 14 C -0.573 4.573 15 H 0.082 0.918 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.100 4.100 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.836 9.079 6.694 14.966 hybrid contribution 0.998 -1.378 -0.510 1.776 sum -8.838 7.701 6.184 13.254 Atomic orbital electron populations 1.21780 0.92768 1.01367 1.03023 1.19978 0.96941 0.96184 0.94376 1.21788 1.00109 0.94152 1.03036 1.19678 0.99530 0.95795 0.97198 1.21043 0.99378 1.00091 0.90176 1.21304 0.99668 0.96060 0.99803 1.21147 0.98088 0.97115 0.95495 1.20286 1.02887 1.00480 0.93936 1.19163 0.95469 0.95509 0.84224 1.85882 1.80152 1.33264 1.26196 1.23145 0.94752 0.77998 1.04037 1.19184 0.92923 0.96546 0.91619 0.98393 1.21420 1.37458 0.98999 0.99390 0.91789 1.25888 0.95956 1.01233 0.95613 1.69971 1.44985 1.36215 1.04715 0.85379 0.77952 0.79201 0.78400 1.18781 1.20265 1.20549 1.20484 0.97208 0.94007 0.98317 0.91164 0.94192 0.90749 0.92790 0.94573 0.91119 0.90710 0.82697 0.82708 0.84504 0.94838 0.87505 0.92437 0.91549 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.01 71.98 0.65 -2.41 16 2 C -0.06 -1.66 3.04 -11.54 -0.04 -1.70 16 3 C -0.13 -3.22 9.00 71.98 0.65 -2.58 16 4 C -0.12 -4.10 4.80 -19.71 -0.09 -4.20 16 5 C -0.09 -2.37 8.70 22.22 0.19 -2.18 16 6 C -0.15 -3.90 10.04 22.25 0.22 -3.68 16 7 C -0.10 -3.19 9.67 22.30 0.22 -2.97 16 8 C -0.18 -7.09 5.75 -19.75 -0.11 -7.20 16 9 C 0.10 4.31 6.46 22.52 0.15 4.46 16 10 O -0.34 -16.58 8.92 -91.83 -0.82 -17.40 16 11 C 0.08 3.91 6.14 72.12 0.44 4.35 16 12 C 0.02 0.85 2.33 -11.38 -0.03 0.82 16 13 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 14 C -0.53 -29.56 8.55 25.60 0.22 -29.34 16 15 H 0.06 3.42 7.75 -2.91 -0.02 3.39 16 16 C 0.01 0.67 5.30 84.65 0.45 1.12 16 17 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 18 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.06 -2.79 5.14 29.89 0.15 -2.64 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.38 7.38 -2.39 -0.02 1.36 16 26 H 0.05 1.94 6.89 -2.39 -0.02 1.92 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.45 7.38 -2.39 -0.02 1.43 16 30 H 0.16 2.95 7.08 -2.91 -0.02 2.93 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.11 6.09 6.02 -2.39 -0.01 6.07 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.07 2.86 8.09 -2.39 -0.02 2.84 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -63.22 297.03 5.56 -57.66 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.04 Total: 15.86 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 3.07 Total: -48.15 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.82 Total: -17.40 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.22 5.56 -57.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.027 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds