Wall clock time and date at job start Mon Mar 30 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 C 1.50704 * 109.47105 * 120.00376 * 2 1 3 5 5 C 1.38008 * 119.89011 * 300.01567 * 4 2 1 6 6 C 1.38243 * 119.95965 * 179.97438 * 5 4 2 7 7 C 1.38154 * 119.98324 * 0.08223 * 6 5 4 8 8 C 1.38464 * 120.31242 * 359.97438 * 7 6 5 9 9 C 1.38411 * 119.83593 * 359.87815 * 8 7 6 10 10 O 1.35839 * 121.80500 * 180.24831 * 9 8 7 11 11 C 1.42826 * 117.85991 * 342.92397 * 10 9 8 12 12 C 1.53407 * 108.37454 * 49.15428 * 11 10 9 13 13 H 1.08995 * 109.69682 * 54.94293 * 12 11 10 14 14 C 1.50704 * 109.73314 * 175.52526 * 12 11 10 15 15 H 1.08001 * 120.00004 * 118.85886 * 14 12 11 16 16 C 1.37871 * 119.99985 * 298.85458 * 14 12 11 17 17 N 1.31520 * 119.99904 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00161 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47182 * 60.00373 * 18 16 14 20 20 H 1.48506 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47257 * 300.00324 * 18 16 14 22 22 C 1.50771 * 118.75843 * 179.83527 * 8 7 6 23 23 H 1.09001 * 109.46738 * 299.99799 * 1 2 3 24 24 H 1.08998 * 109.47148 * 59.99908 * 1 2 3 25 25 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47031 * 239.99775 * 2 1 3 27 27 H 1.08998 * 109.47087 * 300.00129 * 3 2 1 28 28 H 1.09001 * 109.47053 * 60.00393 * 3 2 1 29 29 H 1.09007 * 109.47001 * 180.02562 * 3 2 1 30 30 H 1.07995 * 120.02253 * 359.97438 * 5 4 2 31 31 H 1.08003 * 120.01323 * 180.09979 * 6 5 4 32 32 H 1.07995 * 119.84309 * 180.02562 * 7 6 5 33 33 H 1.09012 * 109.68118 * 289.43727 * 11 10 9 34 34 H 1.09000 * 109.72242 * 168.89639 * 11 10 9 35 35 H 0.97003 * 119.99949 * 179.97438 * 17 16 14 36 36 H 1.08989 * 109.43940 * 42.27930 * 22 8 7 37 37 H 1.09008 * 109.43562 * 282.40219 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6973 -0.2373 2.4828 6 6 2.1569 -0.8883 3.6125 7 6 2.9525 -2.0107 3.4869 8 6 3.2928 -2.4894 2.2330 9 6 2.8317 -1.8415 1.1002 10 8 3.1368 -2.2793 -0.1490 11 6 4.2310 -3.1865 -0.2897 12 6 4.0569 -4.3163 0.7334 13 1 3.0781 -4.7788 0.6069 14 6 5.1362 -5.3499 0.5385 15 1 5.8335 -5.5595 1.3362 16 6 5.2335 -6.0279 -0.6580 17 7 4.3846 -5.7723 -1.6295 18 14 6.5717 -7.3085 -0.8999 19 1 6.4149 -8.3852 0.1108 20 1 6.4616 -7.8883 -2.2626 21 1 7.9028 -6.6698 -0.7403 22 6 4.1659 -3.7148 2.1368 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.0765 0.6410 2.5803 31 1 1.8939 -0.5196 4.5930 32 1 3.3099 -2.5177 4.3710 33 1 5.1685 -2.6628 -0.1024 34 1 4.2374 -3.6016 -1.2975 35 1 4.4532 -6.2491 -2.4715 36 1 3.8414 -4.4502 2.8728 37 1 5.2019 -3.4384 2.3335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:15 Heat of formation + Delta-G solvation = -43.205020 kcal Electronic energy + Delta-G solvation = -18024.943574 eV Core-core repulsion = 15345.097444 eV Total energy + Delta-G solvation = -2679.846130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04139 -37.14316 -35.33066 -33.86399 -31.76549 -29.62315 -28.86959 -26.91606 -25.22754 -24.62509 -22.77063 -22.16934 -19.68113 -18.56285 -17.00257 -16.58018 -15.87687 -15.06291 -14.53036 -14.09641 -14.00106 -13.76769 -13.15355 -13.05352 -12.88711 -12.69106 -12.34964 -12.13081 -11.90756 -11.68851 -11.35076 -11.04727 -10.97412 -10.78767 -10.64765 -10.38866 -10.26087 -10.08992 -9.73788 -9.35678 -8.93403 -8.51677 -8.07757 -7.38407 -6.16234 -4.23200 1.81284 2.00381 3.24754 3.30194 3.32237 4.18538 4.29168 4.41959 5.01099 5.14169 5.17116 5.44474 5.48126 5.49581 5.62213 5.74216 5.79821 5.92631 6.00020 6.05982 6.12687 6.20153 6.28211 6.33192 6.43444 6.49185 6.60381 6.62622 6.70758 6.86657 6.98156 7.01054 7.20429 7.33545 7.46145 7.66736 7.82077 8.15671 8.45914 8.80591 9.42810 10.91171 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032522 B = 0.006317 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.738555 B = 4431.235312 C = 5036.518083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.167 4.167 7 C -0.095 4.095 8 C -0.150 4.150 9 C 0.149 3.851 10 O -0.324 6.324 11 C 0.062 3.938 12 C 0.017 3.983 13 H 0.040 0.960 14 C -0.517 4.517 15 H 0.061 0.939 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.073 4.073 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.036 0.964 34 H 0.133 0.867 35 H 0.266 0.734 36 H 0.065 0.935 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 10.541 5.019 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.185 4.185 7 C -0.114 4.114 8 C -0.151 4.151 9 C 0.103 3.897 10 O -0.237 6.237 11 C -0.012 4.012 12 C -0.001 4.001 13 H 0.058 0.942 14 C -0.555 4.555 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.673 10.515 4.627 12.402 hybrid contribution 0.896 -0.932 0.074 1.295 sum -3.776 9.583 4.701 11.322 Atomic orbital electron populations 1.21823 0.95006 1.01825 1.00992 1.19920 0.95198 0.95281 0.96596 1.21826 1.01162 0.95572 1.01048 1.19295 1.02315 0.95320 0.95116 1.20581 0.99899 0.99481 0.91400 1.20803 1.01936 0.97912 0.97889 1.20875 0.97910 0.96268 0.96301 1.20256 1.03009 0.99389 0.92460 1.18678 0.94337 0.91648 0.85063 1.85938 1.51764 1.61959 1.24085 1.23574 0.84068 0.87912 1.05641 1.19282 0.98870 0.93124 0.88865 0.94184 1.21023 1.14335 1.20443 0.99715 0.92112 1.25043 0.96098 0.96940 0.95981 1.69827 1.36171 1.41989 1.04876 0.86553 0.81988 0.81581 0.77334 1.20113 1.21128 1.20122 1.20669 0.97046 0.92464 1.00777 0.93016 0.92904 0.92594 0.89437 0.92890 0.92987 0.92769 0.86555 0.86910 0.86663 0.94586 0.84959 0.92446 0.91658 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.00 37.16 0.33 -1.49 16 2 C -0.05 -0.79 3.04 -91.77 -0.28 -1.06 16 3 C -0.14 -1.77 9.00 37.16 0.33 -1.43 16 4 C -0.12 -2.09 4.80 -104.38 -0.50 -2.59 16 5 C -0.10 -1.46 8.69 -39.66 -0.34 -1.80 16 6 C -0.17 -2.53 10.04 -39.61 -0.40 -2.93 16 7 C -0.10 -1.62 9.67 -39.53 -0.38 -2.00 16 8 C -0.15 -3.02 5.75 -104.44 -0.60 -3.62 16 9 C 0.15 3.09 6.46 -39.19 -0.25 2.84 16 10 O -0.32 -7.38 8.92 -19.23 -0.17 -7.55 16 11 C 0.06 1.50 6.15 37.37 0.23 1.73 16 12 C 0.02 0.43 2.31 -91.52 -0.21 0.22 16 13 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.52 -13.78 8.54 -34.44 -0.29 -14.07 16 15 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.73 11.41 55.43 0.63 -24.10 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 C -0.07 -1.56 5.14 -27.81 -0.14 -1.70 16 23 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.51 6.89 -51.93 -0.36 1.15 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.12 1.46 7.08 -52.49 -0.37 1.09 16 31 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.13 3.48 6.12 -51.93 -0.32 3.16 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.06 1.33 8.14 -51.94 -0.42 0.91 16 37 H 0.07 1.37 8.09 -51.92 -0.42 0.95 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -27.58 297.18 -8.26 -35.84 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.58 Total: 2.09 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.60 Total: -26.37 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.63 Total: -24.10 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.17 Total: -7.55 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.58 -8.26 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.365 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds