Wall clock time and date at job start Mon Mar 30 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 C 1.50704 * 109.47105 * 120.00376 * 2 1 3 5 5 C 1.38008 * 119.89011 * 300.01567 * 4 2 1 6 6 C 1.38243 * 119.95965 * 179.97438 * 5 4 2 7 7 C 1.38154 * 119.98324 * 0.08223 * 6 5 4 8 8 C 1.38464 * 120.31242 * 359.97438 * 7 6 5 9 9 C 1.38411 * 119.83593 * 359.87815 * 8 7 6 10 10 O 1.35839 * 121.80500 * 180.24831 * 9 8 7 11 11 C 1.42826 * 117.85991 * 342.92397 * 10 9 8 12 12 C 1.53407 * 108.37454 * 49.15428 * 11 10 9 13 13 H 1.08995 * 109.69682 * 54.94293 * 12 11 10 14 14 C 1.50704 * 109.73314 * 175.52526 * 12 11 10 15 15 H 1.08001 * 120.00004 * 118.85886 * 14 12 11 16 16 C 1.37871 * 119.99985 * 298.85458 * 14 12 11 17 17 N 1.31520 * 119.99904 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00161 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47182 * 60.00373 * 18 16 14 20 20 H 1.48506 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47257 * 300.00324 * 18 16 14 22 22 C 1.50771 * 118.75843 * 179.83527 * 8 7 6 23 23 H 1.09001 * 109.46738 * 299.99799 * 1 2 3 24 24 H 1.08998 * 109.47148 * 59.99908 * 1 2 3 25 25 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47031 * 239.99775 * 2 1 3 27 27 H 1.08998 * 109.47087 * 300.00129 * 3 2 1 28 28 H 1.09001 * 109.47053 * 60.00393 * 3 2 1 29 29 H 1.09007 * 109.47001 * 180.02562 * 3 2 1 30 30 H 1.07995 * 120.02253 * 359.97438 * 5 4 2 31 31 H 1.08003 * 120.01323 * 180.09979 * 6 5 4 32 32 H 1.07995 * 119.84309 * 180.02562 * 7 6 5 33 33 H 1.09012 * 109.68118 * 289.43727 * 11 10 9 34 34 H 1.09000 * 109.72242 * 168.89639 * 11 10 9 35 35 H 0.97003 * 119.99949 * 179.97438 * 17 16 14 36 36 H 1.08989 * 109.43940 * 42.27930 * 22 8 7 37 37 H 1.09008 * 109.43562 * 282.40219 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.6973 -0.2373 2.4828 6 6 2.1569 -0.8883 3.6125 7 6 2.9525 -2.0107 3.4869 8 6 3.2928 -2.4894 2.2330 9 6 2.8317 -1.8415 1.1002 10 8 3.1368 -2.2793 -0.1490 11 6 4.2310 -3.1865 -0.2897 12 6 4.0569 -4.3163 0.7334 13 1 3.0781 -4.7788 0.6069 14 6 5.1362 -5.3499 0.5385 15 1 5.8335 -5.5595 1.3362 16 6 5.2335 -6.0279 -0.6580 17 7 4.3846 -5.7723 -1.6295 18 14 6.5717 -7.3085 -0.8999 19 1 6.4149 -8.3852 0.1108 20 1 6.4616 -7.8883 -2.2626 21 1 7.9028 -6.6698 -0.7403 22 6 4.1659 -3.7148 2.1368 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.0765 0.6410 2.5803 31 1 1.8939 -0.5196 4.5930 32 1 3.3099 -2.5177 4.3710 33 1 5.1685 -2.6628 -0.1024 34 1 4.2374 -3.6016 -1.2975 35 1 4.4532 -6.2491 -2.4715 36 1 3.8414 -4.4502 2.8728 37 1 5.2019 -3.4384 2.3335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:15 Heat of formation + Delta-G solvation = -56.737327 kcal Electronic energy + Delta-G solvation = -18025.530379 eV Core-core repulsion = 15345.097444 eV Total energy + Delta-G solvation = -2680.432935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.55915 -38.65942 -36.72072 -35.65190 -33.52604 -31.22681 -30.25323 -27.92890 -27.15133 -26.36506 -24.06082 -23.80402 -21.15969 -20.09899 -18.67608 -18.41239 -17.50211 -16.55996 -16.32049 -15.66508 -15.35238 -15.09075 -14.76757 -14.52116 -14.31576 -14.22281 -14.00314 -13.58207 -13.02148 -12.94825 -12.84964 -12.82172 -12.52775 -12.36876 -12.14739 -11.86383 -11.66807 -11.56268 -11.53342 -11.16008 -10.80051 -10.56329 -9.43293 -8.88000 -8.21882 -6.37386 0.47200 0.62091 1.41192 1.42528 1.50964 2.36934 2.67109 2.91061 3.08856 3.76278 3.94497 4.11198 4.27434 4.29782 4.36870 4.39444 4.43837 4.57129 4.68577 4.72126 4.76000 4.85783 4.92100 4.99268 5.01829 5.07717 5.19096 5.27922 5.38493 5.41077 5.45476 5.60186 5.64913 5.69544 5.74261 5.79542 6.01899 6.19841 6.69581 6.78256 7.32591 8.85046 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032522 B = 0.006317 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.738555 B = 4431.235312 C = 5036.518083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.151 4.151 7 C -0.100 4.100 8 C -0.175 4.175 9 C 0.102 3.898 10 O -0.340 6.340 11 C 0.076 3.924 12 C 0.017 3.983 13 H -0.002 1.002 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.063 4.063 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.266 0.734 36 H 0.070 0.930 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 12.352 7.046 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.168 4.168 7 C -0.118 4.118 8 C -0.176 4.176 9 C 0.057 3.943 10 O -0.255 6.255 11 C 0.002 3.998 12 C -0.002 4.002 13 H 0.016 0.984 14 C -0.575 4.575 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.100 4.100 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.233 12.339 6.674 14.972 hybrid contribution 0.970 -1.404 -0.494 1.777 sum -4.262 10.935 6.180 13.264 Atomic orbital electron populations 1.21789 0.93082 1.01184 1.03035 1.19978 0.96760 0.96363 0.94375 1.21780 1.00260 0.93873 1.03022 1.19678 1.01146 0.94186 0.97199 1.21039 0.99280 1.00186 0.90175 1.21305 0.99511 0.96224 0.99804 1.21148 0.98075 0.97118 0.95493 1.20282 1.04057 0.99330 0.93936 1.19158 0.97084 0.93892 0.84198 1.85877 1.51427 1.61999 1.26181 1.23125 0.84759 0.88075 1.03879 1.19175 0.96222 0.93208 0.91585 0.98371 1.21365 1.14854 1.21174 1.00104 0.91769 1.25888 0.98248 0.98923 0.95588 1.69980 1.37751 1.42895 1.05243 0.85490 0.79266 0.78943 0.77291 1.19434 1.20817 1.19205 1.20484 0.97744 0.93472 0.98324 0.90702 0.91127 0.94577 0.92790 0.91164 0.90751 0.94185 0.82699 0.82709 0.84502 0.94759 0.87728 0.92439 0.91153 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.00 71.98 0.65 -2.58 16 2 C -0.06 -1.66 3.04 -11.54 -0.04 -1.70 16 3 C -0.13 -3.05 9.00 71.98 0.65 -2.40 16 4 C -0.12 -4.10 4.80 -19.71 -0.09 -4.20 16 5 C -0.09 -2.37 8.69 22.22 0.19 -2.18 16 6 C -0.15 -3.90 10.04 22.25 0.22 -3.68 16 7 C -0.10 -3.18 9.67 22.30 0.22 -2.97 16 8 C -0.18 -7.09 5.75 -19.75 -0.11 -7.20 16 9 C 0.10 4.32 6.46 22.52 0.15 4.47 16 10 O -0.34 -16.55 8.92 -91.74 -0.82 -17.37 16 11 C 0.08 3.95 6.15 72.12 0.44 4.40 16 12 C 0.02 0.89 2.31 -11.38 -0.03 0.86 16 13 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 14 C -0.54 -29.69 8.54 25.60 0.22 -29.47 16 15 H 0.06 3.41 7.75 -2.91 -0.02 3.38 16 16 C 0.01 0.70 5.30 84.65 0.45 1.15 16 17 N -0.92 -53.37 11.41 21.45 0.24 -53.12 16 18 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 C -0.06 -2.80 5.14 29.90 0.15 -2.64 16 23 H 0.07 1.45 7.38 -2.39 -0.02 1.43 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.94 6.89 -2.38 -0.02 1.92 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.38 7.38 -2.39 -0.02 1.36 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.16 2.95 7.08 -2.91 -0.02 2.93 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.03 1.72 8.14 -2.38 -0.02 1.71 16 34 H 0.10 5.95 6.12 -2.39 -0.01 5.94 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.07 2.84 8.09 -2.38 -0.02 2.82 16 Total: -1.00 -63.22 297.18 5.56 -57.66 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.04 Total: 15.98 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 3.07 Total: -48.13 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.24 Total: -53.12 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.82 Total: -17.37 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.22 5.56 -57.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.918 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds