Wall clock time and date at job start Mon Mar 30 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47273 * 264.65029 * 3 2 1 5 5 H 1.48497 * 109.47371 * 24.65354 * 3 2 1 6 6 H 1.48508 * 109.47008 * 144.65323 * 3 2 1 7 7 C 1.37873 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00100 * 353.74227 * 7 2 1 9 9 C 1.50703 * 120.00120 * 173.74569 * 7 2 1 10 10 H 1.09006 * 109.46757 * 355.07292 * 9 7 2 11 11 C 1.50691 * 109.47498 * 115.07473 * 9 7 2 12 12 C 1.38293 * 119.97062 * 58.56579 * 11 9 7 13 13 C 1.38245 * 120.11042 * 180.27490 * 12 11 9 14 14 C 1.38168 * 120.05773 * 359.75351 * 13 12 11 15 15 C 1.38706 * 119.94327 * 359.97438 * 14 13 12 16 16 O 1.35895 * 120.05751 * 179.97438 * 15 14 13 17 17 C 1.38116 * 119.97721 * 238.33969 * 11 9 7 18 18 C 1.52995 * 109.47281 * 235.08121 * 9 7 2 19 19 C 1.54266 * 110.03718 * 179.53136 * 18 9 7 20 20 C 1.54959 * 104.16366 * 217.13484 * 19 18 9 21 21 C 1.54888 * 102.77837 * 37.88395 * 20 19 18 22 22 C 1.53875 * 110.03629 * 62.30910 * 18 9 7 23 23 H 0.97002 * 119.99564 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.94784 * 0.02562 * 12 11 9 25 25 H 1.08007 * 119.97278 * 179.72601 * 13 12 11 26 26 H 1.07997 * 120.03031 * 179.97438 * 14 13 12 27 27 H 0.96703 * 114.00338 * 270.02286 * 16 15 14 28 28 H 1.08007 * 120.02710 * 359.97438 * 17 11 9 29 29 H 1.09008 * 110.01627 * 300.92022 * 18 9 7 30 30 H 1.09001 * 110.47932 * 335.78120 * 19 18 9 31 31 H 1.09002 * 110.48596 * 98.41594 * 19 18 9 32 32 H 1.09001 * 110.71711 * 279.57039 * 20 19 18 33 33 H 1.08994 * 110.76510 * 156.21886 * 20 19 18 34 34 H 1.08999 * 110.49058 * 203.41094 * 21 20 19 35 35 H 1.08996 * 110.60031 * 80.81785 * 21 20 19 36 36 H 1.09004 * 110.03569 * 238.57245 * 22 18 9 37 37 H 1.09001 * 110.03243 * 359.95334 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6097 1.9811 -1.3939 5 1 1.3947 2.6826 0.5840 6 1 3.4857 1.4754 0.8100 7 6 2.0045 -1.1941 -0.0005 8 1 1.4692 -2.1266 0.1010 9 6 3.5048 -1.1980 -0.1427 10 1 3.8555 -0.1812 -0.3201 11 6 4.1278 -1.7310 1.1216 12 6 3.8065 -2.9997 1.5685 13 6 4.3721 -3.4894 2.7310 14 6 5.2640 -2.7139 3.4468 15 6 5.5922 -1.4433 2.9976 16 8 6.4688 -0.6784 3.7000 17 6 5.0229 -0.9539 1.8306 18 6 3.9030 -2.0877 -1.3220 19 6 5.4368 -2.0917 -1.4867 20 6 5.6533 -2.1199 -3.0208 21 6 4.5213 -1.2010 -3.5435 22 6 3.3209 -1.5220 -2.6293 23 1 -0.4849 0.8401 0.0004 24 1 3.1096 -3.6074 1.0106 25 1 4.1162 -4.4788 3.0804 26 1 5.7052 -3.0967 4.3551 27 1 6.0533 -0.1192 4.3707 28 1 5.2766 0.0353 1.4790 29 1 3.5421 -3.1037 -1.1614 30 1 5.8689 -1.1879 -1.0572 31 1 5.8679 -2.9792 -1.0233 32 1 5.5387 -3.1324 -3.4079 33 1 6.6311 -1.7143 -3.2806 34 1 4.2852 -1.4388 -4.5807 35 1 4.8037 -0.1526 -3.4482 36 1 2.6782 -2.2637 -3.1036 37 1 2.7540 -0.6141 -2.4235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:38 Heat of formation + Delta-G solvation = -45.195513 kcal Electronic energy + Delta-G solvation = -18176.047095 eV Core-core repulsion = 15496.114651 eV Total energy + Delta-G solvation = -2679.932444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37137 -37.82367 -36.11781 -33.36492 -31.57779 -29.54696 -28.45160 -27.92363 -26.02490 -22.90549 -22.06052 -20.57763 -20.05104 -18.64429 -17.38129 -16.93081 -15.86088 -15.14113 -14.92055 -14.67814 -14.50709 -14.01277 -13.34078 -12.89810 -12.67944 -12.66319 -11.96103 -11.72839 -11.57406 -11.36683 -11.06215 -10.85841 -10.57219 -10.44707 -10.33396 -10.18629 -10.10543 -9.84034 -9.66349 -9.45831 -9.08041 -8.60492 -8.16673 -7.79550 -6.16126 -4.13853 1.88047 2.03244 3.22622 3.31694 3.32640 4.26015 4.34547 4.71195 5.10000 5.28050 5.32056 5.36512 5.47167 5.53399 5.87943 5.97889 6.02687 6.06774 6.12410 6.18909 6.25311 6.30111 6.39763 6.43192 6.44203 6.60341 6.66715 6.81147 6.83858 6.97300 6.98552 7.07523 7.16870 7.32341 7.45885 7.54058 7.67240 8.06246 8.43480 8.89000 9.46164 10.96621 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.010658 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.024319 B = 2626.488047 C = 3482.553185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.049 3.951 10 H 0.042 0.958 11 C -0.011 4.011 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.174 4.174 15 C 0.094 3.906 16 O -0.507 6.507 17 C -0.160 4.160 18 C -0.071 4.071 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.108 4.108 23 H 0.265 0.735 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.382 0.618 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -3.022 0.625 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.695 3.305 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.535 4.535 8 H 0.095 0.905 9 C 0.030 3.970 10 H 0.061 0.939 11 C -0.012 4.012 12 C -0.132 4.132 13 C -0.128 4.128 14 C -0.192 4.192 15 C 0.051 3.949 16 O -0.316 6.316 17 C -0.179 4.179 18 C -0.090 4.090 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.166 4.166 22 C -0.146 4.146 23 H 0.075 0.925 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.237 0.763 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.840 -3.170 0.263 10.341 hybrid contribution -0.036 1.261 0.517 1.363 sum 9.804 -1.909 0.780 10.019 Atomic orbital electron populations 1.69888 1.06216 1.27036 1.50009 1.25045 0.94657 0.98683 0.94291 0.87005 0.80335 0.84105 0.79012 1.19877 1.21614 1.18973 1.20844 0.88054 0.94752 1.49846 0.90494 1.18525 0.96267 0.94715 0.87472 0.93937 1.20545 0.90518 0.92451 0.97690 1.21006 0.99735 0.96224 0.96264 1.20940 0.97039 0.99239 0.95569 1.21099 1.01289 0.95406 1.01454 1.18448 0.92474 0.91071 0.92949 1.84772 1.34535 1.58864 1.53433 1.21353 0.98841 1.00816 0.96845 1.21800 0.92144 0.99523 0.95485 1.22528 0.97717 1.00962 0.94897 1.22490 0.97768 0.99286 0.96576 1.22419 0.96398 0.99075 0.98665 1.22048 0.96276 1.01866 0.94362 0.92548 0.86028 0.86653 0.86761 0.76324 0.86619 0.91967 0.92213 0.92643 0.92129 0.92739 0.92696 0.92437 0.92721 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.87 20.84 26.90 -169.99 -4.57 16.26 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.14 6.84 56.52 0.39 -5.75 16 7 C -0.50 -12.93 7.44 -34.44 -0.26 -13.19 16 8 H 0.08 2.18 8.02 -52.49 -0.42 1.76 16 9 C 0.05 1.08 1.16 -92.93 -0.11 0.98 16 10 H 0.04 0.97 4.60 -51.93 -0.24 0.73 16 11 C -0.01 -0.24 4.08 -104.65 -0.43 -0.66 16 12 C -0.11 -2.19 8.82 -39.56 -0.35 -2.54 16 13 C -0.11 -1.84 10.04 -39.60 -0.40 -2.24 16 14 C -0.17 -2.89 9.99 -39.43 -0.39 -3.28 16 15 C 0.09 1.69 6.70 -39.22 -0.26 1.42 16 16 O -0.51 -7.95 13.50 -19.41 -0.26 -8.22 16 17 C -0.16 -3.17 9.61 -39.43 -0.38 -3.55 16 18 C -0.07 -1.37 2.30 -89.50 -0.21 -1.57 16 19 C -0.12 -2.09 5.69 -25.03 -0.14 -2.23 16 20 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 21 C -0.13 -2.04 6.83 -25.07 -0.17 -2.21 16 22 C -0.11 -2.06 6.05 -25.61 -0.15 -2.21 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.12 2.31 7.62 -52.49 -0.40 1.91 16 25 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.38 4.20 9.06 45.56 0.41 4.62 16 28 H 0.12 2.30 7.92 -52.48 -0.42 1.88 16 29 H 0.06 1.21 7.54 -51.92 -0.39 0.82 16 30 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.62 7.18 -51.93 -0.37 1.25 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -29.08 299.56 -7.83 -36.91 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.77 Total: 7.24 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: -3.52 Total: -31.32 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.77 Total: -25.40 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.26 Total: -8.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.57 Total: 16.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.08 -7.83 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.281 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds