Wall clock time and date at job start Mon Mar 30 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47273 * 264.65029 * 3 2 1 5 5 H 1.48497 * 109.47371 * 24.65354 * 3 2 1 6 6 H 1.48508 * 109.47008 * 144.65323 * 3 2 1 7 7 C 1.37873 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00100 * 353.74227 * 7 2 1 9 9 C 1.50703 * 120.00120 * 173.74569 * 7 2 1 10 10 H 1.09006 * 109.46757 * 355.07292 * 9 7 2 11 11 C 1.50691 * 109.47498 * 115.07473 * 9 7 2 12 12 C 1.38293 * 119.97062 * 58.56579 * 11 9 7 13 13 C 1.38245 * 120.11042 * 180.27490 * 12 11 9 14 14 C 1.38168 * 120.05773 * 359.75351 * 13 12 11 15 15 C 1.38706 * 119.94327 * 359.97438 * 14 13 12 16 16 O 1.35895 * 120.05751 * 179.97438 * 15 14 13 17 17 C 1.38116 * 119.97721 * 238.33969 * 11 9 7 18 18 C 1.52995 * 109.47281 * 235.08121 * 9 7 2 19 19 C 1.54266 * 110.03718 * 179.53136 * 18 9 7 20 20 C 1.54959 * 104.16366 * 217.13484 * 19 18 9 21 21 C 1.54888 * 102.77837 * 37.88395 * 20 19 18 22 22 C 1.53875 * 110.03629 * 62.30910 * 18 9 7 23 23 H 0.97002 * 119.99564 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.94784 * 0.02562 * 12 11 9 25 25 H 1.08007 * 119.97278 * 179.72601 * 13 12 11 26 26 H 1.07997 * 120.03031 * 179.97438 * 14 13 12 27 27 H 0.96703 * 114.00338 * 270.02286 * 16 15 14 28 28 H 1.08007 * 120.02710 * 359.97438 * 17 11 9 29 29 H 1.09008 * 110.01627 * 300.92022 * 18 9 7 30 30 H 1.09001 * 110.47932 * 335.78120 * 19 18 9 31 31 H 1.09002 * 110.48596 * 98.41594 * 19 18 9 32 32 H 1.09001 * 110.71711 * 279.57039 * 20 19 18 33 33 H 1.08994 * 110.76510 * 156.21886 * 20 19 18 34 34 H 1.08999 * 110.49058 * 203.41094 * 21 20 19 35 35 H 1.08996 * 110.60031 * 80.81785 * 21 20 19 36 36 H 1.09004 * 110.03569 * 238.57245 * 22 18 9 37 37 H 1.09001 * 110.03243 * 359.95334 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6097 1.9811 -1.3939 5 1 1.3947 2.6826 0.5840 6 1 3.4857 1.4754 0.8100 7 6 2.0045 -1.1941 -0.0005 8 1 1.4692 -2.1266 0.1010 9 6 3.5048 -1.1980 -0.1427 10 1 3.8555 -0.1812 -0.3201 11 6 4.1278 -1.7310 1.1216 12 6 3.8065 -2.9997 1.5685 13 6 4.3721 -3.4894 2.7310 14 6 5.2640 -2.7139 3.4468 15 6 5.5922 -1.4433 2.9976 16 8 6.4688 -0.6784 3.7000 17 6 5.0229 -0.9539 1.8306 18 6 3.9030 -2.0877 -1.3220 19 6 5.4368 -2.0917 -1.4867 20 6 5.6533 -2.1199 -3.0208 21 6 4.5213 -1.2010 -3.5435 22 6 3.3209 -1.5220 -2.6293 23 1 -0.4849 0.8401 0.0004 24 1 3.1096 -3.6074 1.0106 25 1 4.1162 -4.4788 3.0804 26 1 5.7052 -3.0967 4.3551 27 1 6.0533 -0.1192 4.3707 28 1 5.2766 0.0353 1.4790 29 1 3.5421 -3.1037 -1.1614 30 1 5.8689 -1.1879 -1.0572 31 1 5.8679 -2.9792 -1.0233 32 1 5.5387 -3.1324 -3.4079 33 1 6.6311 -1.7143 -3.2806 34 1 4.2852 -1.4388 -4.5807 35 1 4.8037 -0.1526 -3.4482 36 1 2.6782 -2.2637 -3.1036 37 1 2.7540 -0.6141 -2.4235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:37 Heat of formation + Delta-G solvation = -62.327804 kcal Electronic energy + Delta-G solvation = -18176.790007 eV Core-core repulsion = 15496.114651 eV Total energy + Delta-G solvation = -2680.675356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81046 -39.23686 -37.44490 -35.15837 -33.35728 -31.00145 -29.90011 -29.31469 -27.76303 -24.60102 -23.47469 -22.08133 -21.34522 -20.17121 -19.05558 -18.64680 -17.27033 -16.59377 -16.39464 -16.32336 -15.96385 -15.49624 -14.83012 -14.62869 -14.21656 -14.07408 -13.59298 -13.44781 -12.98254 -12.93731 -12.79346 -12.37922 -11.92355 -11.84368 -11.77767 -11.75676 -11.65362 -11.40037 -11.31437 -11.06639 -10.86023 -10.62917 -9.60702 -9.26449 -8.28409 -6.27715 0.47022 0.60471 1.29418 1.32077 1.40104 2.32078 2.85261 3.11432 3.40867 3.89529 3.93993 3.98905 4.12638 4.21385 4.39454 4.51363 4.61107 4.68477 4.76865 4.80483 4.88897 4.91878 5.00997 5.03727 5.14524 5.17806 5.23754 5.33386 5.41044 5.52244 5.56111 5.57716 5.61986 5.71434 5.80702 5.93400 6.09813 6.36962 6.76022 6.90172 7.35001 8.88186 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.010658 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.024319 B = 2626.488047 C = 3482.553185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.022 3.978 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.485 4.485 8 H 0.039 0.961 9 C 0.052 3.948 10 H 0.033 0.967 11 C -0.032 4.032 12 C -0.133 4.133 13 C -0.100 4.100 14 C -0.167 4.167 15 C 0.100 3.900 16 O -0.509 6.509 17 C -0.178 4.178 18 C -0.070 4.070 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.113 4.113 23 H 0.263 0.737 24 H 0.111 0.889 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.405 0.595 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 -3.493 1.209 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.033 3.967 10 H 0.051 0.949 11 C -0.033 4.033 12 C -0.151 4.151 13 C -0.118 4.118 14 C -0.185 4.185 15 C 0.055 3.945 16 O -0.321 6.321 17 C -0.197 4.197 18 C -0.089 4.089 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.150 4.150 23 H 0.073 0.927 24 H 0.130 0.870 25 H 0.166 0.834 26 H 0.165 0.835 27 H 0.263 0.737 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.706 -3.638 0.858 13.244 hybrid contribution -0.897 1.301 0.423 1.636 sum 11.808 -2.337 1.281 12.105 Atomic orbital electron populations 1.70027 1.07890 1.27666 1.52964 1.25735 0.95204 1.01986 0.94640 0.86138 0.79489 0.80194 0.79581 1.18929 1.21870 1.17564 1.21006 0.90404 0.92997 1.47861 0.94235 1.18422 0.93481 0.95032 0.89730 0.94860 1.20355 0.92050 0.93582 0.97278 1.21049 1.00461 0.95922 0.97689 1.21269 0.95931 1.00521 0.94107 1.21455 1.00398 0.94555 1.02127 1.18497 0.91803 0.91783 0.92381 1.84712 1.34341 1.59142 1.53953 1.21379 0.99723 1.00600 0.97997 1.21724 0.94449 0.98328 0.94429 1.22439 0.95141 1.00978 0.96916 1.22472 0.98322 0.99971 0.94396 1.22395 0.95161 0.99459 0.99052 1.22046 0.97528 1.00161 0.95301 0.92747 0.87046 0.83394 0.83505 0.73686 0.87279 0.92749 0.92906 0.91868 0.90688 0.90405 0.90580 0.92491 0.92902 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.02 1.22 5.45 84.65 0.46 1.68 16 3 Si 0.92 43.96 26.90 68.60 1.85 45.80 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.25 -11.34 6.84 99.48 0.68 -10.66 16 7 C -0.48 -26.35 7.44 25.60 0.19 -26.16 16 8 H 0.04 2.39 8.02 -2.91 -0.02 2.36 16 9 C 0.05 2.35 1.16 -12.29 -0.01 2.34 16 10 H 0.03 1.54 4.60 -2.38 -0.01 1.53 16 11 C -0.03 -1.32 4.08 -19.88 -0.08 -1.41 16 12 C -0.13 -5.04 8.82 22.28 0.20 -4.85 16 13 C -0.10 -3.10 10.04 22.25 0.22 -2.88 16 14 C -0.17 -4.94 9.99 22.37 0.22 -4.71 16 15 C 0.10 3.29 6.70 22.51 0.15 3.44 16 16 O -0.51 -14.27 13.50 -92.36 -1.25 -15.52 16 17 C -0.18 -6.87 9.61 22.37 0.21 -6.65 16 18 C -0.07 -2.74 2.30 -10.07 -0.02 -2.77 16 19 C -0.12 -3.78 5.69 31.69 0.18 -3.60 16 20 C -0.11 -3.05 6.91 31.91 0.22 -2.83 16 21 C -0.12 -3.70 6.83 31.67 0.22 -3.48 16 22 C -0.11 -4.33 6.05 31.32 0.19 -4.14 16 23 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 24 H 0.11 4.35 7.62 -2.91 -0.02 4.32 16 25 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.41 7.48 9.06 -74.05 -0.67 6.81 16 28 H 0.11 4.24 7.92 -2.91 -0.02 4.22 16 29 H 0.05 2.17 7.54 -2.38 -0.02 2.15 16 30 H 0.05 1.78 7.85 -2.39 -0.02 1.76 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.82 7.18 -2.39 -0.02 1.80 16 Total: -1.00 -64.80 299.56 3.60 -61.20 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.36 Total: 22.15 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 2.35 Total: -56.01 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.30 Total: -57.62 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.25 Total: -15.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.85 Total: 45.80 kcal Total: -64.80 3.60 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds