Wall clock time and date at job start Mon Mar 30 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38066 * 119.78568 * 2 1 4 4 C 1.38248 * 120.00803 * 180.02562 * 3 2 1 5 5 C 1.37998 * 119.85488 * 359.89645 * 4 3 2 6 6 C 1.50699 * 119.88293 * 179.97438 * 5 4 3 7 7 C 1.39166 * 120.23551 * 359.93326 * 5 4 3 8 8 C 1.38182 * 119.86074 * 0.26203 * 7 5 4 9 9 C 1.50675 * 122.23637 * 179.68632 * 8 7 5 10 10 C 1.52825 * 110.79221 * 330.71715 * 9 8 7 11 11 H 1.08997 * 109.57560 * 330.33683 * 10 9 8 12 12 C 1.50697 * 109.57475 * 209.95459 * 10 9 8 13 13 H 1.08000 * 120.00067 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00164 * 179.97438 * 12 10 9 15 15 N 1.31512 * 119.99896 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99824 * 0.02562 * 14 12 10 17 17 H 1.48493 * 109.47332 * 90.00036 * 16 14 12 18 18 H 1.48501 * 109.46893 * 209.99958 * 16 14 12 19 19 H 1.48501 * 109.46890 * 329.99815 * 16 14 12 20 20 C 1.53414 * 108.88306 * 90.21471 * 10 9 8 21 21 C 1.53298 * 108.09066 * 301.29545 * 20 10 9 22 22 O 1.35732 * 118.29354 * 180.53993 * 7 5 4 23 23 H 1.09005 * 109.47313 * 264.09755 * 1 2 3 24 24 H 1.08998 * 109.47192 * 24.09766 * 1 2 3 25 25 H 1.08997 * 109.46896 * 144.09860 * 1 2 3 26 26 H 1.08006 * 119.99769 * 0.03750 * 3 2 1 27 27 H 1.07994 * 120.07142 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46819 * 90.00182 * 6 5 4 29 29 H 1.08997 * 109.47418 * 210.00387 * 6 5 4 30 30 H 1.08998 * 109.46981 * 330.00470 * 6 5 4 31 31 H 1.09005 * 109.19893 * 91.04002 * 9 8 7 32 32 H 1.08996 * 109.20491 * 210.38719 * 9 8 7 33 33 H 0.97004 * 119.99617 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.74793 * 181.64242 * 20 10 9 35 35 H 1.09003 * 109.74086 * 60.93913 * 20 10 9 36 36 H 1.09000 * 109.76145 * 208.20031 * 21 20 10 37 37 H 1.09001 * 109.81107 * 87.44990 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1929 1.1983 0.0000 4 6 3.5754 1.2036 -0.0005 5 6 4.2670 0.0095 0.0011 6 6 5.7740 0.0146 -0.0001 7 6 3.5777 -1.1995 0.0047 8 6 2.1959 -1.2037 0.0011 9 6 1.3961 -2.4807 -0.0023 10 6 2.1660 -3.6012 -0.7003 11 1 2.8178 -3.1760 -1.4634 12 6 1.1942 -4.5594 -1.3394 13 1 0.1314 -4.3861 -1.2565 14 6 1.6619 -5.6567 -2.0310 15 7 0.8137 -6.4925 -2.5892 16 14 3.5001 -5.9560 -2.1751 17 1 3.9566 -6.7909 -1.0352 18 1 3.7885 -6.6595 -3.4507 19 1 4.2165 -4.6553 -2.1542 20 6 3.0104 -4.3469 0.3411 21 6 3.9591 -3.3366 0.9965 22 8 4.2974 -2.3503 0.0174 23 1 -0.3634 -0.1057 1.0222 24 1 -0.3633 0.9381 -0.4196 25 1 -0.3633 -0.8324 -0.6026 26 1 1.6493 2.1316 0.0006 27 1 4.1129 2.1403 -0.0010 28 1 6.1380 0.0176 1.0273 29 1 6.1399 -0.8750 -0.5126 30 1 6.1338 0.9049 -0.5157 31 1 1.1873 -2.7756 1.0262 32 1 0.4546 -2.3126 -0.5252 33 1 1.1428 -7.2647 -3.0754 34 1 3.5884 -5.1316 -0.1469 35 1 2.3594 -4.7849 1.0977 36 1 4.8620 -3.8449 1.3350 37 1 3.4644 -2.8609 1.8433 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:12 Heat of formation + Delta-G solvation = -23.738541 kcal Electronic energy + Delta-G solvation = -18468.624938 eV Core-core repulsion = 15789.622938 eV Total energy + Delta-G solvation = -2679.002000 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34950 -37.44822 -35.36201 -33.18968 -31.59393 -30.99395 -29.02155 -27.44297 -25.74936 -24.44578 -23.10158 -20.95105 -20.21169 -19.40736 -16.97555 -16.59954 -15.99087 -15.27037 -14.93267 -14.51625 -13.76599 -13.55725 -13.39776 -13.25743 -12.91570 -12.68471 -12.60150 -12.35744 -11.98207 -11.63100 -11.50158 -11.31507 -11.09284 -10.86955 -10.81336 -10.09098 -10.02515 -9.88359 -9.61364 -9.24839 -8.97121 -8.51972 -8.06096 -7.79163 -6.05898 -4.04714 1.60418 1.68718 3.28756 3.42266 3.50769 3.76985 4.20150 4.45175 5.06561 5.08558 5.22383 5.28563 5.41275 5.47753 5.52174 5.68713 5.73748 5.81327 5.82433 5.84098 5.86856 5.97246 6.04184 6.16602 6.23284 6.32176 6.45837 6.54647 6.66038 6.72855 6.78683 6.83940 7.06758 7.13000 7.28298 7.58601 7.78618 8.02816 8.52261 8.97011 9.57265 11.07000 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.008756 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.659297 B = 3196.993974 C = 3900.426595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.103 4.103 7 C 0.123 3.877 8 C -0.112 4.112 9 C -0.068 4.068 10 C 0.017 3.983 11 H 0.042 0.958 12 C -0.513 4.513 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.280 1.280 18 H -0.298 1.298 19 H -0.256 1.256 20 C -0.151 4.151 21 C 0.063 3.937 22 O -0.322 6.322 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.263 0.737 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 13.086 7.705 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.159 4.159 7 C 0.079 3.921 8 C -0.113 4.113 9 C -0.105 4.105 10 C -0.002 4.002 11 H 0.060 0.940 12 C -0.551 4.551 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.540 5.540 16 Si 0.709 3.291 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.180 1.180 20 C -0.189 4.189 21 C -0.012 4.012 22 O -0.237 6.237 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.720 12.865 7.479 15.943 hybrid contribution 0.772 -0.410 -0.009 0.874 sum 6.492 12.455 7.471 15.909 Atomic orbital electron populations 1.20877 0.91373 1.02820 1.02273 1.19770 0.96017 0.92142 0.99614 1.20824 0.94060 0.97123 1.03904 1.20694 0.94009 0.96538 1.01653 1.19792 0.96297 0.91512 1.04356 1.20574 0.91173 1.02508 1.01685 1.18390 0.89192 0.85574 0.98984 1.20394 0.92882 0.96509 1.01515 1.20691 0.98651 0.90710 1.00445 1.19214 0.94583 0.92823 0.93548 0.94046 1.21085 0.93984 1.07369 1.32612 0.90831 1.25001 0.97506 0.95773 0.94829 1.69901 1.34291 1.14167 1.35660 0.86930 0.86738 0.79106 0.76305 1.20709 1.22551 1.18046 1.22799 0.97904 0.97870 1.00328 1.23117 0.99434 0.88993 0.89613 1.85895 1.57445 1.25469 1.54899 0.91441 0.92092 0.90341 0.86501 0.86243 0.91965 0.91024 0.92211 0.92044 0.90157 0.92722 0.92716 0.91087 0.89845 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.42 36.01 0.34 -1.26 16 2 C -0.08 -1.21 5.88 -104.52 -0.62 -1.82 16 3 C -0.14 -2.00 9.66 -39.64 -0.38 -2.39 16 4 C -0.11 -1.56 9.69 -39.67 -0.38 -1.95 16 5 C -0.12 -1.90 5.90 -104.37 -0.62 -2.52 16 6 C -0.10 -1.37 9.74 36.00 0.35 -1.02 16 7 C 0.12 2.30 5.60 -39.26 -0.22 2.08 16 8 C -0.11 -2.09 5.47 -104.49 -0.57 -2.67 16 9 C -0.07 -1.38 4.34 -27.99 -0.12 -1.50 16 10 C 0.02 0.41 1.37 -91.65 -0.13 0.28 16 11 H 0.04 1.08 5.84 -51.93 -0.30 0.78 16 12 C -0.51 -14.39 9.03 -34.44 -0.31 -14.70 16 13 H 0.07 2.20 7.80 -52.49 -0.41 1.79 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.88 22.38 24.39 -169.99 -4.15 18.23 16 17 H -0.28 -6.85 6.88 56.52 0.39 -6.46 16 18 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 19 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 20 C -0.15 -3.23 4.79 -26.36 -0.13 -3.36 16 21 C 0.06 1.13 6.52 37.31 0.24 1.37 16 22 O -0.32 -6.34 7.76 -18.90 -0.15 -6.49 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 25 H 0.08 1.16 6.03 -51.93 -0.31 0.85 16 26 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.04 7.45 -51.93 -0.39 0.65 16 30 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.06 1.17 7.78 -51.93 -0.40 0.76 16 32 H 0.08 1.64 5.33 -51.93 -0.28 1.36 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 34 H 0.05 1.25 3.44 -51.93 -0.18 1.07 16 35 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -31.14 283.99 -7.10 -38.24 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.23 Total: 0.23 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.64 Total: -27.49 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.15 Total: -6.49 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.15 Total: 18.23 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.14 -7.10 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.503 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds