Wall clock time and date at job start Mon Mar 30 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38066 * 119.78568 * 2 1 4 4 C 1.38248 * 120.00803 * 180.02562 * 3 2 1 5 5 C 1.37998 * 119.85488 * 359.89645 * 4 3 2 6 6 C 1.50699 * 119.88293 * 179.97438 * 5 4 3 7 7 C 1.39166 * 120.23551 * 359.93326 * 5 4 3 8 8 C 1.38182 * 119.86074 * 0.26203 * 7 5 4 9 9 C 1.50675 * 122.23637 * 179.68632 * 8 7 5 10 10 C 1.52825 * 110.79221 * 330.71715 * 9 8 7 11 11 H 1.08997 * 109.57560 * 330.33683 * 10 9 8 12 12 C 1.50697 * 109.57475 * 209.95459 * 10 9 8 13 13 H 1.08000 * 120.00067 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00164 * 179.97438 * 12 10 9 15 15 N 1.31512 * 119.99896 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99824 * 0.02562 * 14 12 10 17 17 H 1.48493 * 109.47332 * 90.00036 * 16 14 12 18 18 H 1.48501 * 109.46893 * 209.99958 * 16 14 12 19 19 H 1.48501 * 109.46890 * 329.99815 * 16 14 12 20 20 C 1.53414 * 108.88306 * 90.21471 * 10 9 8 21 21 C 1.53298 * 108.09066 * 301.29545 * 20 10 9 22 22 O 1.35732 * 118.29354 * 180.53993 * 7 5 4 23 23 H 1.09005 * 109.47313 * 264.09755 * 1 2 3 24 24 H 1.08998 * 109.47192 * 24.09766 * 1 2 3 25 25 H 1.08997 * 109.46896 * 144.09860 * 1 2 3 26 26 H 1.08006 * 119.99769 * 0.03750 * 3 2 1 27 27 H 1.07994 * 120.07142 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46819 * 90.00182 * 6 5 4 29 29 H 1.08997 * 109.47418 * 210.00387 * 6 5 4 30 30 H 1.08998 * 109.46981 * 330.00470 * 6 5 4 31 31 H 1.09005 * 109.19893 * 91.04002 * 9 8 7 32 32 H 1.08996 * 109.20491 * 210.38719 * 9 8 7 33 33 H 0.97004 * 119.99617 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.74793 * 181.64242 * 20 10 9 35 35 H 1.09003 * 109.74086 * 60.93913 * 20 10 9 36 36 H 1.09000 * 109.76145 * 208.20031 * 21 20 10 37 37 H 1.09001 * 109.81107 * 87.44990 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1929 1.1983 0.0000 4 6 3.5754 1.2036 -0.0005 5 6 4.2670 0.0095 0.0011 6 6 5.7740 0.0146 -0.0001 7 6 3.5777 -1.1995 0.0047 8 6 2.1959 -1.2037 0.0011 9 6 1.3961 -2.4807 -0.0023 10 6 2.1660 -3.6012 -0.7003 11 1 2.8178 -3.1760 -1.4634 12 6 1.1942 -4.5594 -1.3394 13 1 0.1314 -4.3861 -1.2565 14 6 1.6619 -5.6567 -2.0310 15 7 0.8137 -6.4925 -2.5892 16 14 3.5001 -5.9560 -2.1751 17 1 3.9566 -6.7909 -1.0352 18 1 3.7885 -6.6595 -3.4507 19 1 4.2165 -4.6553 -2.1542 20 6 3.0104 -4.3469 0.3411 21 6 3.9591 -3.3366 0.9965 22 8 4.2974 -2.3503 0.0174 23 1 -0.3634 -0.1057 1.0222 24 1 -0.3633 0.9381 -0.4196 25 1 -0.3633 -0.8324 -0.6026 26 1 1.6493 2.1316 0.0006 27 1 4.1129 2.1403 -0.0010 28 1 6.1380 0.0176 1.0273 29 1 6.1399 -0.8750 -0.5126 30 1 6.1338 0.9049 -0.5157 31 1 1.1873 -2.7756 1.0262 32 1 0.4546 -2.3126 -0.5252 33 1 1.1428 -7.2647 -3.0754 34 1 3.5884 -5.1316 -0.1469 35 1 2.3594 -4.7849 1.0977 36 1 4.8620 -3.8449 1.3350 37 1 3.4644 -2.8609 1.8433 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:11 Heat of formation + Delta-G solvation = -42.128016 kcal Electronic energy + Delta-G solvation = -18469.422366 eV Core-core repulsion = 15789.622938 eV Total energy + Delta-G solvation = -2679.799427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.68728 -38.75611 -36.96833 -34.78188 -33.48039 -32.32637 -30.09492 -29.13642 -27.33722 -25.60441 -24.81628 -22.29127 -21.63120 -21.03132 -18.90098 -17.99280 -17.54666 -16.78620 -16.43366 -16.04770 -15.17504 -14.98501 -14.88108 -14.69576 -14.47653 -14.14313 -13.89657 -13.56119 -13.40305 -13.13704 -12.87254 -12.71351 -12.49292 -12.39901 -12.17482 -11.90794 -11.78886 -11.61522 -11.19941 -11.00712 -10.89679 -10.69773 -9.30489 -9.04504 -8.33373 -6.35635 0.41568 0.45680 1.24036 1.33399 1.46628 2.29999 2.53158 2.92999 3.02073 3.87798 3.90286 4.01847 4.11222 4.18871 4.27667 4.32061 4.38593 4.47379 4.59826 4.71352 4.76716 4.82907 4.85890 4.87930 4.90893 4.94823 5.01285 5.12020 5.18991 5.40361 5.48694 5.54370 5.60375 5.66830 5.72653 5.80045 6.02910 6.27193 6.68643 6.70841 7.29625 8.83056 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.008756 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.659297 B = 3196.993974 C = 3900.426595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.128 4.128 6 C -0.099 4.099 7 C 0.094 3.906 8 C -0.141 4.141 9 C -0.059 4.059 10 C 0.021 3.979 11 H 0.017 0.983 12 C -0.516 4.516 13 H 0.038 0.962 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.943 3.057 17 H -0.261 1.261 18 H -0.299 1.299 19 H -0.255 1.255 20 C -0.152 4.152 21 C 0.068 3.932 22 O -0.339 6.339 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.265 0.735 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 15.731 9.018 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.156 4.156 7 C 0.050 3.950 8 C -0.142 4.142 9 C -0.096 4.096 10 C 0.002 3.998 11 H 0.036 0.964 12 C -0.554 4.554 13 H 0.056 0.944 14 C -0.182 4.182 15 N -0.588 5.588 16 Si 0.770 3.230 17 H -0.186 1.186 18 H -0.227 1.227 19 H -0.179 1.179 20 C -0.190 4.190 21 C -0.006 4.006 22 O -0.255 6.255 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.169 0.831 27 H 0.175 0.825 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.634 15.523 8.811 19.413 hybrid contribution 0.070 -1.120 -0.428 1.201 sum 7.703 14.403 8.383 18.359 Atomic orbital electron populations 1.20893 0.90196 1.03234 1.02842 1.20058 0.97107 0.92082 0.99366 1.21234 0.94496 0.97563 1.02024 1.21163 0.94173 0.97277 0.99407 1.20170 0.97785 0.91148 1.03797 1.20600 0.89416 1.02826 1.02761 1.18739 0.89353 0.86211 1.00719 1.20307 0.93213 0.96336 1.04306 1.20461 0.97982 0.91030 1.00085 1.19068 0.93786 0.93059 0.93863 0.96448 1.21435 0.93394 1.08100 1.32511 0.94397 1.25797 1.02005 0.95667 0.94699 1.70038 1.36446 1.15118 1.37217 0.85913 0.81313 0.79104 0.76669 1.18623 1.22732 1.17917 1.22704 0.98293 0.98245 0.99749 1.23140 0.99958 0.88138 0.89407 1.85870 1.57724 1.26186 1.55701 0.90195 0.89558 0.92562 0.83095 0.82533 0.90447 0.92796 0.89776 0.91418 0.91533 0.92581 0.94114 0.90656 0.86929 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.42 71.24 0.67 -2.31 16 2 C -0.09 -2.61 5.88 -19.80 -0.12 -2.72 16 3 C -0.14 -3.32 9.66 22.23 0.21 -3.11 16 4 C -0.10 -2.45 9.69 22.22 0.22 -2.23 16 5 C -0.13 -3.75 5.90 -19.70 -0.12 -3.86 16 6 C -0.10 -2.33 9.74 71.24 0.69 -1.64 16 7 C 0.09 3.39 5.60 22.48 0.13 3.51 16 8 C -0.14 -5.18 5.47 -19.78 -0.11 -5.29 16 9 C -0.06 -2.44 4.34 29.78 0.13 -2.31 16 10 C 0.02 1.03 1.37 -11.46 -0.02 1.01 16 11 H 0.02 0.93 5.84 -2.39 -0.01 0.92 16 12 C -0.52 -30.29 9.03 25.60 0.23 -30.06 16 13 H 0.04 2.42 7.80 -2.91 -0.02 2.40 16 14 C 0.02 0.92 5.45 84.66 0.46 1.39 16 15 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 16 Si 0.94 47.26 24.39 68.60 1.67 48.93 16 17 H -0.26 -12.14 6.88 99.48 0.68 -11.45 16 18 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 19 H -0.25 -12.62 6.53 99.48 0.65 -11.97 16 20 C -0.15 -6.45 4.79 30.83 0.15 -6.30 16 21 C 0.07 2.31 6.52 72.08 0.47 2.78 16 22 O -0.34 -12.99 7.76 -90.56 -0.70 -13.69 16 23 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16 25 H 0.06 1.70 6.03 -2.39 -0.01 1.68 16 26 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.46 7.45 -2.39 -0.02 1.44 16 30 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.07 2.61 7.78 -2.38 -0.02 2.60 16 32 H 0.07 2.87 5.33 -2.39 -0.01 2.86 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.04 1.82 3.44 -2.39 -0.01 1.81 16 35 H 0.07 3.05 8.11 -2.39 -0.02 3.03 16 36 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.07 2.18 7.77 -2.39 -0.02 2.16 16 Total: -1.00 -70.08 283.99 5.25 -64.82 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.98 Total: 11.29 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 3.00 Total: -51.13 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.30 Total: -60.22 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.70 Total: -13.69 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -70.08 5.25 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.697 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds