Wall clock time and date at job start Mon Mar 30 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00123 * 2 1 4 4 C 1.50705 * 109.25001 * 181.84363 * 3 2 1 5 5 H 1.08000 * 120.00104 * 237.06810 * 4 3 2 6 6 C 1.37878 * 119.99822 * 57.07054 * 4 3 2 7 7 N 1.31508 * 120.00355 * 353.72160 * 6 4 3 8 8 Si 1.86801 * 119.99697 * 173.72857 * 6 4 3 9 9 H 1.48501 * 109.47030 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47316 * 299.99459 * 8 6 4 11 11 H 1.48502 * 109.47413 * 59.99773 * 8 6 4 12 12 C 1.52732 * 109.25614 * 301.30978 * 3 2 1 13 13 C 1.53323 * 108.37604 * 171.32376 * 12 3 2 14 14 C 1.52740 * 108.37487 * 290.07761 * 13 12 3 15 15 C 1.50636 * 110.58666 * 51.05501 * 14 13 12 16 16 C 1.38911 * 117.75149 * 162.52788 * 15 14 13 17 17 C 1.37931 * 120.55171 * 179.76328 * 16 15 14 18 18 C 1.50695 * 120.11825 * 179.97438 * 17 16 15 19 19 C 1.38269 * 119.76807 * 0.02562 * 17 16 15 20 20 C 1.37929 * 119.76831 * 0.10016 * 19 17 16 21 21 C 1.37584 * 122.54955 * 342.48356 * 15 14 13 22 22 H 1.09005 * 109.46664 * 306.37314 * 1 2 3 23 23 H 1.09001 * 109.47475 * 66.36747 * 1 2 3 24 24 H 1.08997 * 109.47688 * 186.37507 * 1 2 3 25 25 H 0.97004 * 120.00144 * 359.90035 * 7 6 4 26 26 H 1.08997 * 109.68744 * 291.04882 * 12 3 2 27 27 H 1.08999 * 109.68351 * 51.59928 * 12 3 2 28 28 H 1.08999 * 109.68188 * 49.79738 * 13 12 3 29 29 H 1.09002 * 109.68786 * 170.31924 * 13 12 3 30 30 H 1.09002 * 109.25642 * 171.33900 * 14 13 12 31 31 H 1.08999 * 109.25207 * 290.80774 * 14 13 12 32 32 H 1.08008 * 119.72612 * 359.78502 * 16 15 14 33 33 H 1.09004 * 109.46689 * 89.99866 * 18 17 16 34 34 H 1.09000 * 109.47146 * 209.99945 * 18 17 16 35 35 H 1.09001 * 109.47227 * 330.00492 * 18 17 16 36 36 H 1.07996 * 120.11234 * 180.08377 * 19 17 16 37 37 H 1.08003 * 119.72307 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5114 1.1809 -0.0458 5 1 4.1146 1.6327 0.7278 6 6 4.1148 0.4902 -1.0753 7 7 3.3798 -0.1636 -1.9481 8 14 5.9763 0.4831 -1.2303 9 1 6.3716 -0.3261 -2.4111 10 1 6.4645 1.8755 -1.3980 11 1 6.5729 -0.1064 -0.0048 12 6 1.5306 2.0703 -1.2319 13 6 1.9850 3.5289 -1.1024 14 6 1.1799 4.1865 0.0167 15 6 1.2322 3.3504 1.2686 16 6 0.8805 3.9579 2.4673 17 6 0.9032 3.2448 3.6478 18 6 0.5203 3.9137 4.9427 19 6 1.2794 1.9143 3.6390 20 6 1.6314 1.3100 2.4502 21 6 1.6100 2.0275 1.2599 22 1 -0.3633 0.6095 0.8275 23 1 -0.3634 0.4120 -0.9415 24 1 -0.3634 -1.0212 0.1141 25 1 2.4132 -0.1612 -1.8667 26 1 1.9636 1.6292 -2.1296 27 1 0.4429 2.0284 -1.2897 28 1 3.0470 3.5624 -0.8591 29 1 1.8067 4.0538 -2.0409 30 1 1.5942 5.1729 0.2257 31 1 0.1427 4.2924 -0.3012 32 1 0.5866 4.9971 2.4750 33 1 -0.5512 3.7999 5.1075 34 1 1.0656 3.4515 5.7655 35 1 0.7695 4.9737 4.8917 36 1 1.2978 1.3504 4.5598 37 1 1.9248 0.2706 2.4441 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261314799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:42 Heat of formation + Delta-G solvation = -53.376952 kcal Electronic energy + Delta-G solvation = -18755.265603 eV Core-core repulsion = 16074.978385 eV Total energy + Delta-G solvation = -2680.287218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36675 -38.75204 -36.37199 -34.64018 -33.16081 -31.71875 -29.81918 -27.62362 -27.35928 -26.36093 -23.92300 -22.68420 -22.51329 -20.14615 -18.92925 -17.75828 -16.67215 -16.09623 -15.95275 -15.69565 -15.51493 -15.30383 -14.80149 -14.68255 -14.25930 -14.12399 -13.83924 -13.27693 -13.06331 -12.96113 -12.81034 -12.60737 -12.47248 -12.22759 -12.05366 -11.92477 -11.72757 -11.44554 -11.37537 -10.58372 -10.45957 -10.08579 -9.53994 -9.20536 -8.44368 -6.30452 0.54098 0.56337 1.52784 1.59624 1.79210 2.57452 2.87411 3.13563 3.67229 3.85571 3.93344 4.12610 4.17207 4.27538 4.32938 4.42548 4.46539 4.56944 4.57280 4.64405 4.72051 4.80235 4.87621 4.88200 4.90679 5.02332 5.07361 5.19206 5.25224 5.34924 5.48569 5.51096 5.71708 5.74260 5.93795 6.09578 6.22130 6.26306 6.70114 6.92497 7.58440 8.88947 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.008559 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.713042 B = 3270.561620 C = 3341.837714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.255 3.745 4 C -0.593 4.593 5 H 0.038 0.962 6 C -0.008 4.008 7 N -0.917 5.917 8 Si 1.104 2.896 9 H -0.282 1.282 10 H -0.269 1.269 11 H -0.279 1.279 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.070 4.070 15 C -0.093 4.093 16 C -0.130 4.130 17 C -0.100 4.100 18 C -0.103 4.103 19 C -0.137 4.137 20 C -0.118 4.118 21 C -0.092 4.092 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.080 0.920 25 H 0.278 0.722 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 9.297 8.429 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.218 3.782 4 C -0.630 4.630 5 H 0.056 0.944 6 C -0.211 4.211 7 N -0.554 5.554 8 Si 0.927 3.073 9 H -0.208 1.208 10 H -0.194 1.194 11 H -0.205 1.205 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.106 4.106 15 C -0.093 4.093 16 C -0.147 4.147 17 C -0.100 4.100 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.136 4.136 21 C -0.093 4.093 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.181 8.562 7.523 12.520 hybrid contribution -1.334 0.031 0.656 1.486 sum -6.514 8.593 8.179 13.534 Atomic orbital electron populations 1.22648 0.84040 1.01551 0.98900 1.88256 1.17888 1.31819 1.94303 1.18223 0.92151 0.79562 0.88262 1.21847 0.89861 1.39300 1.11977 0.94366 1.26961 1.10098 0.91638 0.92370 1.70736 1.09191 1.37886 1.37627 0.83122 0.70384 0.77373 0.76467 1.20776 1.19396 1.20464 1.22037 0.97828 0.97403 1.00049 1.21373 1.00103 0.94283 0.98431 1.20463 1.00797 0.97906 0.91481 1.19945 0.99318 0.93391 0.96614 1.21252 1.01717 1.00641 0.91129 1.20158 0.99412 0.93731 0.96725 1.20756 1.02178 1.00612 0.92351 1.21140 1.01446 0.95556 0.97319 1.21110 0.99971 0.99513 0.93023 1.20439 0.97690 0.94594 0.96535 0.94938 0.95080 0.90121 0.90923 0.93656 0.93778 0.92909 0.90965 0.89064 0.89919 0.83764 0.90195 0.90942 0.90365 0.84772 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 10.09 113.37 1.14 2.21 16 2 O -0.40 -21.28 7.67 -148.98 -1.14 -22.42 16 3 C 0.26 12.97 0.25 -12.40 0.00 12.97 16 4 C -0.59 -33.84 7.07 25.60 0.18 -33.65 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 6 C -0.01 -0.43 5.12 84.66 0.43 0.00 16 7 N -0.92 -56.06 12.71 21.45 0.27 -55.79 16 8 Si 1.10 51.15 29.91 68.60 2.05 53.20 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.13 -6.34 4.29 30.61 0.13 -6.21 16 13 C -0.10 -4.16 5.93 30.62 0.18 -3.97 16 14 C -0.07 -2.30 5.67 29.74 0.17 -2.13 16 15 C -0.09 -3.49 5.73 -19.88 -0.11 -3.61 16 16 C -0.13 -4.01 9.27 22.36 0.21 -3.80 16 17 C -0.10 -2.95 5.87 -19.93 -0.12 -3.07 16 18 C -0.10 -2.02 10.02 71.23 0.71 -1.31 16 19 C -0.14 -4.66 9.71 22.20 0.22 -4.44 16 20 C -0.12 -5.05 8.54 22.38 0.19 -4.85 16 21 C -0.09 -4.13 3.56 -19.86 -0.07 -4.20 16 22 H 0.03 1.30 6.65 -2.38 -0.02 1.29 16 23 H 0.03 1.25 6.55 -2.39 -0.02 1.24 16 24 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.28 17.15 4.93 -92.71 -0.46 16.70 16 26 H 0.04 2.41 5.90 -2.39 -0.01 2.39 16 27 H 0.04 1.92 6.18 -2.39 -0.01 1.90 16 28 H 0.05 2.37 7.19 -2.39 -0.02 2.35 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.14 3.43 8.05 -2.91 -0.02 3.41 16 33 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.09 4.43 7.68 -2.91 -0.02 4.41 16 Total: -1.00 -67.77 288.52 5.80 -61.97 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.36 Total: 19.11 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 3.26 Total: -56.07 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.27 Total: -55.79 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.14 Total: -22.42 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -67.77 5.80 -61.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.593 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds