Wall clock time and date at job start Mon Mar 30 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48502 * 109.46984 * 274.66556 * 3 2 1 5 5 H 1.48506 * 109.47041 * 34.66414 * 3 2 1 6 6 H 1.48500 * 109.46772 * 154.66316 * 3 2 1 7 7 C 1.39942 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 162.23009 * 7 2 1 9 9 C 1.41395 * 120.00127 * 342.23802 * 7 2 1 10 10 C 1.40714 * 120.24479 * 155.28770 * 9 7 2 11 11 C 1.37621 * 119.74697 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24693 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.75111 * 180.02562 * 12 11 10 14 14 H 1.09007 * 109.47019 * 24.99497 * 13 12 11 15 15 O 1.42895 * 109.47417 * 144.99695 * 13 12 11 16 16 C 1.53006 * 109.47031 * 265.00053 * 13 12 11 17 17 C 1.54894 * 110.48748 * 65.21807 * 16 13 12 18 18 C 1.54889 * 102.74535 * 156.62433 * 17 16 13 19 19 C 1.54270 * 104.19822 * 322.05852 * 18 17 16 20 20 C 1.53878 * 106.59790 * 23.61111 * 19 18 17 21 21 C 1.38638 * 120.50157 * 0.29211 * 12 11 10 22 22 C 1.37624 * 120.24438 * 359.45739 * 21 12 11 23 23 H 0.97000 * 119.99531 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.12817 * 359.97438 * 10 9 7 25 25 H 1.07999 * 119.87288 * 179.97438 * 11 10 9 26 26 H 0.96698 * 113.99936 * 60.00059 * 15 13 12 27 27 H 1.09001 * 110.53329 * 302.60815 * 16 13 12 28 28 H 1.08992 * 110.75552 * 274.94176 * 17 16 13 29 29 H 1.08999 * 110.75112 * 38.31146 * 17 16 13 30 30 H 1.08998 * 110.48658 * 203.38367 * 18 17 16 31 31 H 1.08996 * 110.48823 * 80.73975 * 18 17 16 32 32 H 1.09000 * 110.03328 * 264.32913 * 19 18 17 33 33 H 1.08993 * 110.07355 * 142.91495 * 19 18 17 34 34 H 1.08993 * 110.03530 * 240.71843 * 20 19 18 35 35 H 1.08994 * 110.03297 * 119.28076 * 20 19 18 36 36 H 1.08000 * 119.87891 * 179.70229 * 21 12 11 37 37 H 1.08003 * 120.12505 * 180.26979 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4926 2.6222 0.7963 6 1 3.5857 1.4136 0.5992 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2849 9 6 1.3515 -2.4071 0.3746 10 6 1.8216 -3.6493 -0.0900 11 6 1.1745 -4.8062 0.2801 12 6 0.0638 -4.7508 1.1078 13 6 -0.6359 -6.0245 1.5065 14 1 0.0655 -6.8571 1.4509 15 8 -1.1241 -5.9014 2.8438 16 6 -1.8082 -6.2811 0.5572 17 6 -1.2941 -6.5486 -0.8792 18 6 -2.4558 -7.3527 -1.5138 19 6 -2.9539 -8.2629 -0.3721 20 6 -2.5421 -7.5815 0.9447 21 6 -0.4115 -3.5321 1.5671 22 6 0.2229 -2.3630 1.2139 23 1 -0.4849 0.8401 0.0004 24 1 2.6865 -3.6947 -0.7352 25 1 1.5334 -5.7606 -0.0757 26 1 -1.7547 -5.1787 2.9674 27 1 -2.4979 -5.4371 0.5646 28 1 -1.1356 -5.6118 -1.4134 29 1 -0.3799 -7.1419 -0.8580 30 1 -2.0934 -7.9522 -2.3489 31 1 -3.2501 -6.6819 -1.8409 32 1 -2.4865 -9.2448 -0.4464 33 1 -4.0384 -8.3614 -0.4182 34 1 -1.8749 -8.2326 1.5094 35 1 -3.4268 -7.3485 1.5372 36 1 -1.2805 -3.5003 2.2075 37 1 -0.1464 -1.4150 1.5763 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:52 Heat of formation + Delta-G solvation = -75.909850 kcal Electronic energy + Delta-G solvation = -17673.775889 eV Core-core repulsion = 14992.511572 eV Total energy + Delta-G solvation = -2681.264318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45562 -38.70331 -37.00089 -35.42558 -32.28974 -31.24176 -30.18641 -29.44170 -27.43265 -24.75199 -22.99600 -21.94532 -21.10672 -20.81385 -19.24489 -17.84761 -17.23113 -16.83781 -16.30011 -15.80217 -15.67394 -14.96686 -14.62875 -14.26588 -14.16220 -13.86117 -13.61839 -13.40140 -12.99429 -12.76718 -12.75482 -12.47306 -12.11416 -12.00611 -11.85889 -11.78148 -11.51846 -11.37584 -11.30858 -11.20936 -11.02217 -10.58970 -9.36207 -9.18152 -8.65046 -6.33882 0.94421 1.13865 1.36763 1.47256 1.53016 2.19787 2.69647 3.50633 3.69943 3.81065 3.85273 3.97899 4.25850 4.38274 4.48046 4.53907 4.62613 4.65303 4.78207 4.78923 4.91227 4.92851 5.02722 5.11442 5.15847 5.17630 5.28486 5.35529 5.41098 5.46266 5.54548 5.56017 5.70324 5.95715 6.09581 6.19929 6.38651 6.69286 6.85795 6.93857 7.03111 8.32199 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.005236 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.908663 B = 5346.404861 C = 5493.365791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.227 4.227 13 C 0.181 3.819 14 H 0.093 0.907 15 O -0.571 6.571 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.189 4.189 23 H 0.288 0.712 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.378 0.622 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -9.712 -0.240 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.263 4.263 11 C -0.099 4.099 12 C -0.228 4.228 13 C 0.122 3.878 14 H 0.111 0.889 15 O -0.378 6.378 16 C -0.131 4.131 17 C -0.150 4.150 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.208 4.208 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.227 0.773 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.144 -10.079 -0.159 11.317 hybrid contribution 0.110 1.660 -0.284 1.688 sum -5.034 -8.419 -0.442 9.819 Atomic orbital electron populations 1.69879 1.08967 1.30466 1.35915 1.26728 0.95481 1.04420 0.91190 0.85232 0.79201 0.76108 0.79409 1.18673 1.18931 1.18396 1.19834 0.98273 0.92732 1.42541 0.90930 1.17972 0.92044 0.93057 0.89402 1.21169 1.04389 0.93347 1.07389 1.20600 0.95143 0.96812 0.97324 1.20069 1.00773 0.95010 1.06938 1.20523 0.93061 0.93482 0.80730 0.88890 1.86462 1.65174 1.56872 1.29317 1.22603 0.96645 0.98288 0.95528 1.22389 0.98616 0.99309 0.94723 1.22360 0.97356 0.98122 0.98160 1.22139 1.01157 0.98811 0.93620 1.22083 0.99721 0.95303 0.97608 1.20620 0.98868 0.92437 0.99567 1.21245 1.00263 0.97085 1.02247 0.90186 0.88740 0.86660 0.77275 0.92081 0.93714 0.91284 0.90707 0.92086 0.90975 0.91058 0.91738 0.91697 0.87348 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.73 10.97 21.83 0.24 -43.49 16 2 C 0.04 1.87 5.14 85.25 0.44 2.30 16 3 Si 0.98 38.72 29.60 68.60 2.03 40.76 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.84 9.05 23.46 0.21 -27.62 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 9 C 0.08 4.26 5.57 -21.29 -0.12 4.14 16 10 C -0.24 -12.12 9.80 22.73 0.22 -11.90 16 11 C -0.08 -3.49 9.14 22.22 0.20 -3.28 16 12 C -0.23 -9.34 4.68 -19.68 -0.09 -9.43 16 13 C 0.18 5.97 2.60 29.85 0.08 6.04 16 14 H 0.09 2.98 8.02 -2.38 -0.02 2.96 16 15 O -0.57 -18.55 12.81 -148.98 -1.91 -20.46 16 16 C -0.11 -3.21 2.60 -9.72 -0.03 -3.24 16 17 C -0.11 -3.18 5.42 31.89 0.17 -3.01 16 18 C -0.12 -2.75 6.83 31.67 0.22 -2.53 16 19 C -0.12 -2.38 6.80 31.32 0.21 -2.17 16 20 C -0.11 -2.55 6.07 31.32 0.19 -2.36 16 21 C -0.10 -4.37 9.30 22.22 0.21 -4.17 16 22 C -0.19 -10.02 8.70 22.73 0.20 -9.82 16 23 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 24 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 25 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.38 10.59 7.37 -74.06 -0.55 10.04 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 4.24 6.60 -2.91 -0.02 4.22 16 37 H 0.10 5.49 6.18 -2.91 -0.02 5.47 16 Total: -1.00 -59.50 299.75 2.98 -56.52 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.51 Total: 33.71 kcal Atomic # 6 Polarization: -69.16 SS G_CDS: 2.11 Total: -67.04 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.24 Total: -43.49 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.91 Total: -20.46 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.76 kcal Total: -59.50 2.98 -56.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.390 kcal (2) G-P(sol) polarization free energy of solvation -59.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds