Wall clock time and date at job start Mon Mar 30 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48501 * 109.46710 * 239.99514 * 3 2 1 5 5 H 1.48492 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46902 * 119.99877 * 3 2 1 7 7 C 1.39935 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00270 * 197.86030 * 7 2 1 9 9 C 1.41394 * 120.00189 * 17.85617 * 7 2 1 10 10 C 1.40717 * 120.24495 * 24.39071 * 9 7 2 11 11 C 1.37619 * 119.75039 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24512 * 359.97438 * 11 10 9 13 13 C 1.50691 * 119.74855 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.47259 * 339.99641 * 13 12 11 15 15 O 1.42896 * 109.47208 * 219.99818 * 13 12 11 16 16 C 1.52997 * 109.47313 * 99.99649 * 13 12 11 17 17 C 1.54266 * 110.03519 * 297.91147 * 16 13 12 18 18 C 1.54965 * 104.16046 * 217.13574 * 17 16 13 19 19 C 1.54893 * 102.78007 * 37.88466 * 18 17 16 20 20 C 1.53881 * 110.03512 * 180.68875 * 16 13 12 21 21 C 1.38633 * 120.49957 * 0.29556 * 12 11 10 22 22 C 1.37618 * 120.25157 * 359.44486 * 21 12 11 23 23 H 0.97005 * 119.99577 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.12569 * 359.97438 * 10 9 7 25 25 H 1.07999 * 119.87590 * 179.97438 * 11 10 9 26 26 H 0.96702 * 114.00477 * 299.99819 * 15 13 12 27 27 H 1.09007 * 110.01557 * 59.30203 * 16 13 12 28 28 H 1.09003 * 110.47890 * 335.77853 * 17 16 13 29 29 H 1.08992 * 110.48974 * 98.42410 * 17 16 13 30 30 H 1.08997 * 110.71791 * 279.57140 * 18 17 16 31 31 H 1.09008 * 110.92311 * 156.29316 * 18 17 16 32 32 H 1.09001 * 110.48703 * 203.40689 * 19 18 17 33 33 H 1.08998 * 110.59762 * 80.81721 * 19 18 17 34 34 H 1.08995 * 110.03002 * 238.57009 * 20 16 13 35 35 H 1.09000 * 110.02984 * 359.95371 * 20 16 13 36 36 H 1.08000 * 119.87450 * 179.70414 * 21 12 11 37 37 H 1.08003 * 120.13207 * 180.27390 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3521 -2.4071 -0.3744 10 6 0.2209 -2.3627 -1.2102 11 6 -0.4099 -3.5322 -1.5683 12 6 0.0655 -4.7509 -1.1093 13 6 -0.6335 -6.0247 -1.5089 14 1 -1.6471 -5.7952 -1.8374 15 8 -0.6849 -6.9112 -0.3894 16 6 0.1346 -6.6909 -2.6522 17 6 0.1529 -5.7655 -3.8863 18 6 0.0232 -6.7345 -5.0887 19 6 -0.9692 -7.8015 -4.5633 20 6 -0.5781 -7.9851 -3.0823 21 6 1.1758 -4.8062 -0.2809 22 6 1.8255 -3.6498 0.0857 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1514 -1.4143 -1.5686 25 1 -1.2785 -3.5004 -2.2094 26 1 0.1836 -7.1588 -0.0435 27 1 1.1541 -6.9132 -2.3370 28 1 -0.6913 -5.0766 -3.8590 29 1 1.0931 -5.2165 -3.9376 30 1 0.9864 -7.1863 -5.3255 31 1 -0.3860 -6.2219 -5.9594 32 1 -0.8474 -8.7372 -5.1088 33 1 -1.9956 -7.4439 -4.6453 34 1 0.0958 -8.8352 -2.9767 35 1 -1.4708 -8.1389 -2.4760 36 1 1.5347 -5.7607 0.0747 37 1 2.6929 -3.6954 0.7276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:55 Heat of formation + Delta-G solvation = -61.549713 kcal Electronic energy + Delta-G solvation = -17675.940900 eV Core-core repulsion = 14995.299285 eV Total energy + Delta-G solvation = -2680.641615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.06508 -37.13028 -35.59808 -33.58109 -30.72875 -29.26633 -28.78002 -28.34636 -25.75727 -23.21664 -21.17340 -20.43505 -20.05652 -19.37204 -17.34483 -16.29018 -15.86074 -15.34486 -14.95133 -14.36578 -13.92496 -13.52981 -13.13567 -12.89800 -12.72065 -12.12865 -12.00205 -11.61725 -11.50144 -11.25391 -11.09446 -10.94257 -10.88470 -10.77672 -10.52187 -10.43746 -10.39014 -10.08053 -9.86811 -9.43486 -9.14117 -9.07561 -7.48460 -7.32259 -6.78157 -4.37220 2.73880 3.03236 3.05278 3.07259 3.18036 3.91061 4.53364 4.76189 4.87081 4.96029 5.15877 5.44984 5.65312 5.68440 5.72863 5.82886 5.87673 5.91844 6.00249 6.08116 6.12141 6.25387 6.29214 6.34024 6.40318 6.48220 6.60157 6.74545 6.91888 7.05684 7.25356 7.34510 7.57302 7.80930 8.01714 8.02392 8.20390 8.26984 8.61331 8.87089 8.94853 10.16223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.005287 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.636137 B = 5294.349850 C = 5604.959391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.111 3.889 10 C -0.165 4.165 11 C -0.089 4.089 12 C -0.239 4.239 13 C 0.173 3.827 14 H 0.086 0.914 15 O -0.567 6.567 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.083 4.083 22 C -0.225 4.225 23 H 0.281 0.719 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.367 0.633 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -8.527 -6.423 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.184 4.184 11 C -0.108 4.108 12 C -0.241 4.241 13 C 0.115 3.885 14 H 0.104 0.896 15 O -0.372 6.372 16 C -0.133 4.133 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.101 4.101 22 C -0.245 4.245 23 H 0.092 0.908 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.214 0.786 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.164 -8.299 -6.499 10.605 hybrid contribution 0.992 0.838 0.172 1.310 sum -0.172 -7.461 -6.326 9.784 Atomic orbital electron populations 1.69825 1.07596 1.29338 1.34985 1.25907 0.94708 1.01302 0.92225 0.86378 0.80171 0.80259 0.79987 1.18817 1.20315 1.19002 1.19566 0.98130 0.91345 1.40288 0.90521 1.17617 0.91087 0.91974 0.88415 1.21304 0.99374 0.96707 1.01022 1.20454 0.98276 0.92580 0.99453 1.19571 1.01615 0.93909 1.08958 1.20594 0.97744 0.86304 0.83861 0.89603 1.86497 1.33981 1.67331 1.49408 1.22460 0.99542 0.94799 0.96527 1.22263 1.02461 0.97085 0.92790 1.22537 0.98987 0.96973 0.97935 1.22366 0.99219 0.98511 0.96123 1.22173 1.00524 0.97273 0.95606 1.20154 0.95612 0.96233 0.98098 1.20918 1.03695 0.92925 1.06939 0.90792 0.86476 0.89616 0.78625 0.91370 0.91365 0.91505 0.91991 0.92027 0.92379 0.91931 0.92557 0.91320 0.89899 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 10.95 55.55 0.61 -19.89 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.55 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.29 9.05 -37.75 -0.34 -12.63 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.11 2.96 5.58 -106.82 -0.60 2.36 16 10 C -0.16 -4.24 8.70 -38.87 -0.34 -4.58 16 11 C -0.09 -2.04 8.95 -39.66 -0.35 -2.39 16 12 C -0.24 -5.05 4.48 -104.33 -0.47 -5.52 16 13 C 0.17 3.06 2.43 -27.89 -0.07 2.99 16 14 H 0.09 1.55 7.98 -51.93 -0.41 1.13 16 15 O -0.57 -9.89 12.65 -35.23 -0.45 -10.34 16 16 C -0.11 -1.72 2.68 -89.50 -0.24 -1.96 16 17 C -0.11 -1.60 5.57 -25.03 -0.14 -1.74 16 18 C -0.13 -1.54 6.91 -24.70 -0.17 -1.71 16 19 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 20 C -0.12 -1.54 6.23 -25.61 -0.16 -1.70 16 21 C -0.08 -1.80 9.29 -39.66 -0.37 -2.17 16 22 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.12 3.12 6.15 -52.48 -0.32 2.80 16 25 H 0.09 1.78 7.90 -52.49 -0.41 1.37 16 26 H 0.37 5.42 7.47 45.56 0.34 5.76 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.06 7.27 -51.93 -0.38 0.68 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.94 7.44 -51.93 -0.39 0.56 16 36 H 0.08 1.54 6.75 -52.49 -0.35 1.19 16 37 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -27.29 298.37 -9.12 -36.40 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.86 Total: 10.48 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -3.88 Total: -34.70 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.61 Total: -19.89 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.45 Total: -10.34 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.29 -9.12 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.145 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds