Wall clock time and date at job start Mon Mar 30 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00236 * 2 1 4 4 C 1.50699 * 109.25433 * 182.42117 * 3 2 1 5 5 H 1.08003 * 120.00440 * 234.38503 * 4 3 2 6 6 C 1.37877 * 119.99782 * 54.38482 * 4 3 2 7 7 N 1.31513 * 120.00089 * 352.07114 * 6 4 3 8 8 Si 1.86800 * 119.99981 * 172.07321 * 6 4 3 9 9 H 1.48497 * 109.47212 * 60.00021 * 8 6 4 10 10 H 1.48500 * 109.47073 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47149 * 299.99588 * 8 6 4 12 12 C 1.52739 * 109.25415 * 301.89450 * 3 2 1 13 13 C 1.53329 * 108.37829 * 171.35555 * 12 3 2 14 14 C 1.52739 * 108.37275 * 290.08171 * 13 12 3 15 15 C 1.50637 * 110.58293 * 51.08137 * 14 13 12 16 16 C 1.38914 * 117.74376 * 162.70221 * 15 14 13 17 17 C 1.37933 * 120.54458 * 180.11532 * 16 15 14 18 18 C 1.38262 * 119.76836 * 359.42981 * 17 16 15 19 19 C 1.50699 * 120.11265 * 180.33294 * 18 17 16 20 20 C 1.37928 * 119.77243 * 0.35692 * 18 17 16 21 21 C 1.37658 * 122.56975 * 342.41860 * 15 14 13 22 22 H 1.08998 * 109.47153 * 186.52149 * 1 2 3 23 23 H 1.08993 * 109.47040 * 306.52484 * 1 2 3 24 24 H 1.09002 * 109.46462 * 66.52591 * 1 2 3 25 25 H 0.97002 * 120.00561 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.68031 * 51.62828 * 12 3 2 27 27 H 1.09001 * 109.67567 * 291.07530 * 12 3 2 28 28 H 1.08995 * 109.67805 * 170.36765 * 13 12 3 29 29 H 1.09000 * 109.68475 * 49.80859 * 13 12 3 30 30 H 1.08990 * 109.26011 * 290.79282 * 14 13 12 31 31 H 1.09004 * 109.25041 * 171.35747 * 14 13 12 32 32 H 1.07996 * 119.72899 * 359.80118 * 16 15 14 33 33 H 1.08002 * 120.11574 * 179.67203 * 17 16 15 34 34 H 1.08995 * 109.47471 * 270.02633 * 19 18 17 35 35 H 1.09003 * 109.47524 * 30.02498 * 19 18 17 36 36 H 1.09006 * 109.47480 * 150.02051 * 19 18 17 37 37 H 1.08005 * 119.72451 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5109 1.1812 -0.0601 5 1 4.1233 1.6663 0.6856 6 6 4.1022 0.4482 -1.0671 7 7 3.3593 -0.2691 -1.8815 8 14 5.9584 0.4738 -1.2748 9 1 6.6021 -0.0335 -0.0364 10 1 6.3403 -0.3905 -2.4203 11 1 6.4085 1.8654 -1.5323 12 6 1.5192 2.0754 -1.2243 13 6 1.9755 3.5334 -1.0934 14 6 1.1816 4.1868 0.0360 15 6 1.2462 3.3460 1.2841 16 6 0.9029 3.9481 2.4880 17 6 0.9439 3.2325 3.6665 18 6 1.3184 1.9017 3.6488 19 6 1.3587 1.1105 4.9308 20 6 1.6555 1.3009 2.4539 21 6 1.6227 2.0220 1.2670 22 1 -0.3633 -1.0210 0.1167 23 1 -0.3633 0.6116 0.8258 24 1 -0.3632 0.4094 -0.9427 25 1 3.7752 -0.7852 -2.5898 26 1 0.4310 2.0341 -1.2717 27 1 1.9435 1.6376 -2.1278 28 1 1.7876 4.0620 -2.0279 29 1 3.0398 3.5655 -0.8605 30 1 0.1415 4.2946 -0.2713 31 1 1.5981 5.1723 0.2446 32 1 0.6062 4.9864 2.5021 33 1 0.6806 3.7090 4.5992 34 1 2.3489 1.1942 5.3785 35 1 0.6129 1.5016 5.6228 36 1 1.1433 0.0632 4.7184 37 1 1.9476 0.2611 2.4409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261340638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:45 Heat of formation + Delta-G solvation = -31.875092 kcal Electronic energy + Delta-G solvation = -18761.582174 eV Core-core repulsion = 16082.227347 eV Total energy + Delta-G solvation = -2679.354827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61964 -36.76806 -34.69019 -32.59376 -31.22001 -30.44053 -28.16938 -26.51231 -25.26662 -24.48209 -22.21023 -21.26083 -20.83523 -18.18169 -16.38909 -15.76430 -14.95286 -14.85556 -14.34118 -14.19595 -13.66460 -13.52384 -13.25311 -12.86912 -12.72031 -12.45472 -11.95483 -11.91252 -11.46897 -11.38671 -11.12832 -10.91304 -10.81687 -10.57404 -10.44577 -10.14969 -9.97430 -9.65834 -9.53547 -8.88027 -8.49665 -7.99751 -7.92459 -7.67745 -5.98496 -4.12607 2.03079 2.13983 3.31611 3.36300 3.39437 4.35849 4.48198 5.10892 5.34739 5.37275 5.59007 5.61302 5.63870 5.76553 5.92148 5.95420 5.96210 6.12157 6.14857 6.24511 6.34922 6.37711 6.44250 6.50029 6.56930 6.65766 6.77547 6.82577 6.86201 7.01247 7.16944 7.25880 7.29374 7.51979 7.66601 7.81886 7.97241 8.27627 8.71978 9.13495 9.55338 11.04662 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.009423 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.762788 B = 2970.628138 C = 3191.303152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.276 3.724 4 C -0.513 4.513 5 H 0.063 0.937 6 C 0.083 3.917 7 N -0.848 5.848 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.074 4.074 15 C -0.086 4.086 16 C -0.131 4.131 17 C -0.138 4.138 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.095 4.095 21 C -0.058 4.058 22 H 0.058 0.942 23 H 0.019 0.981 24 H 0.025 0.975 25 H 0.260 0.740 26 H 0.030 0.970 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 5.413 5.983 9.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.260 6.260 3 C 0.238 3.762 4 C -0.550 4.550 5 H 0.081 0.919 6 C -0.124 4.124 7 N -0.483 5.483 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.111 4.111 15 C -0.086 4.086 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.108 4.108 19 C -0.163 4.163 20 C -0.113 4.113 21 C -0.059 4.059 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.925 5.106 5.818 9.175 hybrid contribution 0.730 0.263 -0.053 0.778 sum -4.195 5.369 5.765 8.926 Atomic orbital electron populations 1.22509 0.87009 0.99665 0.98054 1.88440 1.14252 1.29431 1.93901 1.18024 0.92989 0.79802 0.85361 1.20695 0.88152 1.33924 1.12249 0.91879 1.24985 0.97694 0.94114 0.95583 1.70096 1.34821 1.26330 1.17043 0.86758 0.85976 0.78103 0.77786 1.20133 1.21205 1.20064 1.22005 0.97222 0.94539 1.02820 1.21479 1.01184 0.96393 0.95761 1.20434 0.99954 0.97264 0.93492 1.19680 1.00020 0.94339 0.94556 1.20986 1.02260 0.99089 0.92557 1.20692 1.03423 0.94150 0.97332 1.19785 1.01323 0.94468 0.95221 1.20691 1.01458 0.99505 0.94651 1.21092 0.98681 1.00510 0.91066 1.20845 0.93992 0.93063 0.97951 0.92354 0.96263 0.95658 0.93046 0.95169 0.89598 0.93482 0.90474 0.92098 0.92128 0.87329 0.87346 0.91854 0.92440 0.91896 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.08 101.05 1.02 1.56 16 2 O -0.34 -8.82 8.42 -35.23 -0.30 -9.11 16 3 C 0.28 6.81 0.27 -93.09 -0.03 6.78 16 4 C -0.51 -13.83 7.05 -34.44 -0.24 -14.07 16 5 H 0.06 1.73 7.75 -52.48 -0.41 1.32 16 6 C 0.08 2.24 5.10 -17.82 -0.09 2.15 16 7 N -0.85 -23.76 11.21 55.43 0.62 -23.14 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C -0.13 -2.95 4.54 -26.69 -0.12 -3.08 16 13 C -0.11 -2.22 5.93 -26.69 -0.16 -2.38 16 14 C -0.07 -1.33 5.67 -28.05 -0.16 -1.49 16 15 C -0.09 -1.70 5.74 -104.61 -0.60 -2.30 16 16 C -0.13 -2.27 9.61 -39.44 -0.38 -2.65 16 17 C -0.14 -2.30 9.71 -39.68 -0.39 -2.69 16 18 C -0.11 -1.93 5.87 -104.73 -0.61 -2.54 16 19 C -0.11 -1.50 10.02 36.00 0.36 -1.14 16 20 C -0.10 -2.01 8.25 -39.44 -0.33 -2.33 16 21 C -0.06 -1.29 3.56 -104.62 -0.37 -1.66 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.02 0.39 6.70 -51.93 -0.35 0.04 16 24 H 0.02 0.53 6.55 -51.93 -0.34 0.19 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.03 0.66 6.17 -51.93 -0.32 0.34 16 27 H 0.09 2.21 6.63 -51.93 -0.34 1.86 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.68 7.19 -51.93 -0.37 1.31 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.12 2.72 7.68 -52.48 -0.40 2.32 16 LS Contribution 291.87 15.07 4.40 4.40 Total: -1.00 -28.75 291.87 -7.86 -36.62 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.47 Total: 1.24 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.10 Total: -25.84 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.62 Total: -23.14 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.30 Total: -9.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.75 -7.86 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.743 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds