Wall clock time and date at job start Mon Mar 30 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00236 * 2 1 4 4 C 1.50699 * 109.25433 * 182.42117 * 3 2 1 5 5 H 1.08003 * 120.00440 * 234.38503 * 4 3 2 6 6 C 1.37877 * 119.99782 * 54.38482 * 4 3 2 7 7 N 1.31513 * 120.00089 * 352.07114 * 6 4 3 8 8 Si 1.86800 * 119.99981 * 172.07321 * 6 4 3 9 9 H 1.48497 * 109.47212 * 60.00021 * 8 6 4 10 10 H 1.48500 * 109.47073 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47149 * 299.99588 * 8 6 4 12 12 C 1.52739 * 109.25415 * 301.89450 * 3 2 1 13 13 C 1.53329 * 108.37829 * 171.35555 * 12 3 2 14 14 C 1.52739 * 108.37275 * 290.08171 * 13 12 3 15 15 C 1.50637 * 110.58293 * 51.08137 * 14 13 12 16 16 C 1.38914 * 117.74376 * 162.70221 * 15 14 13 17 17 C 1.37933 * 120.54458 * 180.11532 * 16 15 14 18 18 C 1.38262 * 119.76836 * 359.42981 * 17 16 15 19 19 C 1.50699 * 120.11265 * 180.33294 * 18 17 16 20 20 C 1.37928 * 119.77243 * 0.35692 * 18 17 16 21 21 C 1.37658 * 122.56975 * 342.41860 * 15 14 13 22 22 H 1.08998 * 109.47153 * 186.52149 * 1 2 3 23 23 H 1.08993 * 109.47040 * 306.52484 * 1 2 3 24 24 H 1.09002 * 109.46462 * 66.52591 * 1 2 3 25 25 H 0.97002 * 120.00561 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.68031 * 51.62828 * 12 3 2 27 27 H 1.09001 * 109.67567 * 291.07530 * 12 3 2 28 28 H 1.08995 * 109.67805 * 170.36765 * 13 12 3 29 29 H 1.09000 * 109.68475 * 49.80859 * 13 12 3 30 30 H 1.08990 * 109.26011 * 290.79282 * 14 13 12 31 31 H 1.09004 * 109.25041 * 171.35747 * 14 13 12 32 32 H 1.07996 * 119.72899 * 359.80118 * 16 15 14 33 33 H 1.08002 * 120.11574 * 179.67203 * 17 16 15 34 34 H 1.08995 * 109.47471 * 270.02633 * 19 18 17 35 35 H 1.09003 * 109.47524 * 30.02498 * 19 18 17 36 36 H 1.09006 * 109.47480 * 150.02051 * 19 18 17 37 37 H 1.08005 * 119.72451 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5109 1.1812 -0.0601 5 1 4.1233 1.6663 0.6856 6 6 4.1022 0.4482 -1.0671 7 7 3.3593 -0.2691 -1.8815 8 14 5.9584 0.4738 -1.2748 9 1 6.6021 -0.0335 -0.0364 10 1 6.3403 -0.3905 -2.4203 11 1 6.4085 1.8654 -1.5323 12 6 1.5192 2.0754 -1.2243 13 6 1.9755 3.5334 -1.0934 14 6 1.1816 4.1868 0.0360 15 6 1.2462 3.3460 1.2841 16 6 0.9029 3.9481 2.4880 17 6 0.9439 3.2325 3.6665 18 6 1.3184 1.9017 3.6488 19 6 1.3587 1.1105 4.9308 20 6 1.6555 1.3009 2.4539 21 6 1.6227 2.0220 1.2670 22 1 -0.3633 -1.0210 0.1167 23 1 -0.3633 0.6116 0.8258 24 1 -0.3632 0.4094 -0.9427 25 1 3.7752 -0.7852 -2.5898 26 1 0.4310 2.0341 -1.2717 27 1 1.9435 1.6376 -2.1278 28 1 1.7876 4.0620 -2.0279 29 1 3.0398 3.5655 -0.8605 30 1 0.1415 4.2946 -0.2713 31 1 1.5981 5.1723 0.2446 32 1 0.6062 4.9864 2.5021 33 1 0.6806 3.7090 4.5992 34 1 2.3489 1.1942 5.3785 35 1 0.6129 1.5016 5.6228 36 1 1.1433 0.0632 4.7184 37 1 1.9476 0.2611 2.4409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261340638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:45 Heat of formation + Delta-G solvation = -47.052835 kcal Electronic energy + Delta-G solvation = -18762.240330 eV Core-core repulsion = 16082.227347 eV Total energy + Delta-G solvation = -2680.012984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17341 -38.41211 -36.28663 -34.55722 -32.71263 -31.97543 -29.77896 -28.11734 -26.86863 -26.36925 -23.73846 -22.79681 -22.38290 -19.86738 -18.31233 -17.38342 -16.71189 -16.40033 -15.97432 -15.86254 -15.40148 -15.06681 -14.56916 -14.45982 -14.20768 -13.92811 -13.75135 -13.38195 -12.92034 -12.85792 -12.78984 -12.70373 -12.44865 -12.30134 -11.99183 -11.89134 -11.65788 -11.42671 -11.20966 -10.74331 -10.48360 -9.77959 -9.44049 -9.11708 -8.03465 -6.23530 0.60696 0.69089 1.41371 1.41688 1.49420 2.42803 2.97696 3.13566 3.82918 3.99779 4.05651 4.20573 4.29202 4.34190 4.41408 4.59699 4.63072 4.69513 4.73294 4.77202 4.80469 4.86435 4.93698 5.00148 5.02467 5.08132 5.21819 5.26928 5.40622 5.44598 5.61209 5.65980 5.71014 5.82214 5.94250 6.12268 6.30727 6.38300 6.67802 7.26653 7.48333 8.98461 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.009423 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.762788 B = 2970.628138 C = 3191.303152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.270 3.730 4 C -0.525 4.525 5 H 0.047 0.953 6 C 0.039 3.961 7 N -0.877 5.877 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.267 1.267 12 C -0.123 4.123 13 C -0.107 4.107 14 C -0.069 4.069 15 C -0.104 4.104 16 C -0.125 4.125 17 C -0.132 4.132 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.087 4.087 22 H 0.074 0.926 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.258 0.742 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 7.630 7.726 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.232 3.768 4 C -0.562 4.562 5 H 0.065 0.935 6 C -0.165 4.165 7 N -0.513 5.513 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.109 4.109 19 C -0.161 4.161 20 C -0.140 4.140 21 C -0.087 4.087 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.711 7.331 7.567 11.984 hybrid contribution 0.923 -0.433 -0.519 1.144 sum -4.788 6.898 7.048 10.963 Atomic orbital electron populations 1.22556 0.85095 1.00854 0.98236 1.88325 1.16498 1.30655 1.94226 1.17998 0.91737 0.79718 0.87333 1.20913 0.90073 1.33536 1.11727 0.93468 1.25643 1.01525 0.93905 0.95419 1.70218 1.36243 1.27205 1.17595 0.85873 0.81383 0.78375 0.77562 1.20228 1.20724 1.19231 1.21873 0.97196 0.96335 1.00693 1.21413 1.00050 0.94866 0.98128 1.20444 1.00713 0.97784 0.91660 1.19963 1.00335 0.93570 0.96584 1.21377 1.00615 1.00699 0.91575 1.21162 1.01553 0.93394 0.98849 1.20163 0.99868 0.95563 0.95265 1.20747 1.02940 0.98991 0.93441 1.20991 1.00964 0.99494 0.92546 1.20683 0.96569 0.94484 0.96983 0.90768 0.95537 0.95693 0.93275 0.94585 0.93153 0.91276 0.92914 0.90221 0.89321 0.83708 0.83405 0.90934 0.89516 0.92280 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.30 10.08 113.37 1.14 2.44 16 2 O -0.38 -20.31 8.42 -148.98 -1.26 -21.57 16 3 C 0.27 13.73 0.27 -12.39 0.00 13.73 16 4 C -0.53 -29.46 7.05 25.60 0.18 -29.28 16 5 H 0.05 2.71 7.75 -2.91 -0.02 2.68 16 6 C 0.04 2.17 5.10 84.65 0.43 2.60 16 7 N -0.88 -51.11 11.21 21.45 0.24 -50.87 16 8 Si 0.94 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C -0.12 -5.81 4.54 30.62 0.14 -5.68 16 13 C -0.11 -4.24 5.93 30.62 0.18 -4.06 16 14 C -0.07 -2.29 5.67 29.74 0.17 -2.13 16 15 C -0.10 -3.94 5.74 -19.86 -0.11 -4.05 16 16 C -0.12 -3.84 9.61 22.36 0.21 -3.63 16 17 C -0.13 -3.87 9.71 22.20 0.22 -3.65 16 18 C -0.11 -3.66 5.87 -19.93 -0.12 -3.78 16 19 C -0.10 -2.69 10.02 71.24 0.71 -1.98 16 20 C -0.12 -5.18 8.25 22.36 0.18 -5.00 16 21 C -0.09 -3.88 3.56 -19.86 -0.07 -3.95 16 22 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 23 H 0.03 1.10 6.70 -2.39 -0.02 1.08 16 24 H 0.02 1.06 6.55 -2.39 -0.02 1.05 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.04 1.60 6.17 -2.39 -0.01 1.59 16 27 H 0.05 2.70 6.63 -2.39 -0.02 2.68 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 2.32 7.19 -2.39 -0.02 2.31 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.45 8.13 -2.38 -0.02 2.43 16 32 H 0.15 3.39 8.05 -2.91 -0.02 3.36 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.06 1.55 8.09 -2.38 -0.02 1.53 16 37 H 0.09 4.40 7.68 -2.91 -0.02 4.38 16 Total: -1.00 -64.86 291.87 5.32 -59.54 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.04 Total: 15.26 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 3.27 Total: -48.42 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.24 Total: -50.87 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.26 Total: -21.57 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.86 5.32 -59.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.485 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds