Wall clock time and date at job start Mon Mar 30 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99801 * 2 1 4 4 C 1.50692 * 109.68733 * 57.89539 * 3 2 1 5 5 H 1.07998 * 120.00372 * 236.52875 * 4 3 2 6 6 C 1.37875 * 119.99956 * 56.52781 * 4 3 2 7 7 N 1.31514 * 120.00136 * 354.08898 * 6 4 3 8 8 Si 1.86801 * 120.00179 * 174.09154 * 6 4 3 9 9 H 1.48491 * 109.47559 * 89.99927 * 8 6 4 10 10 H 1.48506 * 109.47190 * 210.00065 * 8 6 4 11 11 H 1.48505 * 109.46849 * 329.99707 * 8 6 4 12 12 C 1.53334 * 109.68511 * 297.32754 * 3 2 1 13 13 C 1.52736 * 108.38930 * 310.20161 * 12 3 2 14 14 C 1.50632 * 110.59153 * 308.96648 * 13 12 3 15 15 C 1.38909 * 117.75098 * 197.50093 * 14 13 12 16 16 C 1.37931 * 120.55049 * 180.19770 * 15 14 13 17 17 C 1.50701 * 120.11832 * 180.02562 * 16 15 14 18 18 C 1.38266 * 119.76977 * 0.03972 * 16 15 14 19 19 C 1.37930 * 119.76949 * 359.89551 * 18 16 15 20 20 C 1.37664 * 122.56827 * 17.54379 * 14 13 12 21 21 C 1.50627 * 122.57132 * 359.55616 * 20 14 13 22 22 H 1.09004 * 109.47072 * 303.30739 * 1 2 3 23 23 H 1.08998 * 109.46716 * 63.30324 * 1 2 3 24 24 H 1.09002 * 109.46895 * 183.30484 * 1 2 3 25 25 H 0.97003 * 120.00575 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.68196 * 190.46855 * 12 3 2 27 27 H 1.09005 * 109.67666 * 69.91720 * 12 3 2 28 28 H 1.08998 * 109.24753 * 188.68207 * 13 12 3 29 29 H 1.08994 * 109.25559 * 69.25294 * 13 12 3 30 30 H 1.08004 * 119.72770 * 0.21639 * 15 14 13 31 31 H 1.08996 * 109.46837 * 269.97964 * 17 16 15 32 32 H 1.08994 * 109.46940 * 29.97588 * 17 16 15 33 33 H 1.08999 * 109.47220 * 149.98037 * 17 16 15 34 34 H 1.08000 * 120.11297 * 179.87314 * 18 16 15 35 35 H 1.08007 * 119.73080 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.25618 * 137.92209 * 21 20 14 37 37 H 1.09007 * 109.25256 * 257.39198 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5278 2.0759 1.2019 5 1 1.0331 3.0269 1.0708 6 6 1.7180 1.5667 2.4690 7 7 2.2142 0.3588 2.6246 8 14 1.2709 2.5926 3.9647 9 1 -0.1415 2.3303 4.3406 10 1 2.1602 2.2300 5.0974 11 1 1.4388 4.0331 3.6450 12 6 1.6148 2.0469 -1.2826 13 6 1.8986 1.1340 -2.4738 14 6 3.3061 0.6013 -2.4095 15 6 3.8506 0.0707 -3.5721 16 6 5.1331 -0.4368 -3.5775 17 6 5.7143 -1.0096 -4.8445 18 6 5.8836 -0.4185 -2.4164 19 6 5.3453 0.1092 -1.2613 20 6 4.0547 0.6232 -1.2545 21 6 3.5328 1.1907 0.0395 22 1 -0.3633 0.5643 0.8589 23 1 -0.3633 0.4617 -0.9181 24 1 -0.3633 -1.0260 0.0592 25 1 2.3477 0.0003 3.5160 26 1 2.2005 2.9616 -1.3733 27 1 0.5531 2.2917 -1.2525 28 1 1.7696 1.6981 -3.3975 29 1 1.1976 0.2995 -2.4621 30 1 3.2649 0.0556 -4.4794 31 1 5.4891 -2.0747 -4.8984 32 1 5.2794 -0.5023 -5.7055 33 1 6.7949 -0.8663 -4.8458 34 1 6.8877 -0.8162 -2.4139 35 1 5.9319 0.1228 -0.3546 36 1 3.8227 0.5366 0.8618 37 1 3.9633 2.1796 0.1979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261343421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:47 Heat of formation + Delta-G solvation = -36.672511 kcal Electronic energy + Delta-G solvation = -18434.515494 eV Core-core repulsion = 15754.952635 eV Total energy + Delta-G solvation = -2679.562859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50298 -37.17362 -33.78875 -32.56555 -31.97083 -30.11392 -28.48421 -26.66381 -25.28872 -24.03064 -22.60865 -21.49210 -20.38741 -18.11794 -16.67962 -15.37705 -15.13211 -14.71461 -14.41475 -14.09104 -13.75962 -13.45828 -13.40011 -12.90246 -12.45367 -12.32363 -12.03887 -11.85507 -11.65898 -11.51229 -11.02465 -10.96389 -10.78709 -10.67114 -10.45671 -10.28797 -10.23554 -9.78235 -9.42781 -8.64866 -8.55619 -8.11266 -7.77445 -7.62879 -5.98171 -4.16571 1.97869 2.01334 3.26189 3.34483 3.37502 4.34167 4.37988 5.18160 5.22766 5.27028 5.50042 5.55248 5.65199 5.68950 5.77830 5.87830 6.02709 6.05731 6.08545 6.24457 6.28537 6.51838 6.58387 6.67838 6.69675 6.72998 6.80949 6.94642 6.95913 7.10040 7.12211 7.14992 7.24563 7.59798 7.65285 7.76055 7.92212 8.21828 8.79397 9.13887 9.56241 11.01764 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.007092 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.405248 B = 3946.897887 C = 4311.977158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.366 6.366 3 C 0.245 3.755 4 C -0.558 4.558 5 H 0.056 0.944 6 C 0.083 3.917 7 N -0.851 5.851 8 Si 0.882 3.118 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 C -0.139 4.139 13 C -0.073 4.073 14 C -0.064 4.064 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.105 4.105 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.050 4.050 21 C -0.061 4.061 22 H 0.044 0.956 23 H 0.008 0.992 24 H 0.047 0.953 25 H 0.259 0.741 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -0.705 -9.598 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.284 6.284 3 C 0.206 3.794 4 C -0.595 4.595 5 H 0.075 0.925 6 C -0.124 4.124 7 N -0.487 5.487 8 Si 0.709 3.291 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.177 4.177 13 C -0.110 4.110 14 C -0.064 4.064 15 C -0.145 4.145 16 C -0.111 4.111 17 C -0.162 4.162 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.050 4.050 21 C -0.098 4.098 22 H 0.063 0.937 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.608 -1.020 -9.469 10.184 hybrid contribution -0.437 0.701 0.934 1.247 sum 3.170 -0.319 -8.535 9.110 Atomic orbital electron populations 1.22156 0.84871 0.98819 0.98398 1.87866 1.16607 1.29599 1.94373 1.18828 0.89409 0.81156 0.89969 1.21434 1.40878 1.06220 0.91003 0.92528 1.24993 0.94305 0.94403 0.98671 1.70089 1.42226 1.14197 1.22151 0.86783 0.78386 0.81007 0.82935 1.20686 1.21107 1.19824 1.22183 1.00662 0.98353 0.96542 1.20373 0.93084 0.99222 0.98323 1.19622 0.95937 0.98333 0.92517 1.20923 0.95017 1.00830 0.97711 1.19617 0.94886 1.01280 0.95335 1.20677 1.00293 1.00370 0.94869 1.20787 0.99326 1.01782 0.92912 1.21191 0.95718 0.99527 0.97718 1.20184 0.92874 0.96079 0.95886 1.20499 0.96404 1.00049 0.92844 0.93730 0.97328 0.93413 0.93069 0.92517 0.92556 0.92722 0.90893 0.87217 0.91919 0.92224 0.92217 0.87126 0.86664 0.88431 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 10.04 101.05 1.01 2.25 16 2 O -0.37 -9.27 8.36 -35.23 -0.29 -9.57 16 3 C 0.24 5.91 0.30 -91.74 -0.03 5.88 16 4 C -0.56 -14.61 6.62 -34.44 -0.23 -14.84 16 5 H 0.06 1.48 7.76 -52.49 -0.41 1.07 16 6 C 0.08 2.19 5.16 -17.82 -0.09 2.10 16 7 N -0.85 -23.58 11.26 55.43 0.62 -22.95 16 8 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.14 -2.92 4.30 -26.69 -0.11 -3.04 16 13 C -0.07 -1.37 5.23 -28.05 -0.15 -1.52 16 14 C -0.06 -1.25 5.67 -104.62 -0.59 -1.85 16 15 C -0.13 -2.16 9.27 -39.45 -0.37 -2.53 16 16 C -0.11 -1.76 5.87 -104.72 -0.61 -2.38 16 17 C -0.11 -1.25 10.02 36.01 0.36 -0.89 16 18 C -0.13 -2.14 9.71 -39.68 -0.39 -2.52 16 19 C -0.12 -2.31 9.61 -39.44 -0.38 -2.69 16 20 C -0.05 -1.05 5.62 -104.62 -0.59 -1.64 16 21 C -0.06 -1.43 4.39 -28.06 -0.12 -1.55 16 22 H 0.04 1.07 6.93 -51.93 -0.36 0.71 16 23 H 0.01 0.17 6.30 -51.93 -0.33 -0.16 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.06 1.15 7.22 -51.93 -0.38 0.78 16 28 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.40 6.89 -51.93 -0.36 1.05 16 30 H 0.11 1.62 8.05 -52.48 -0.42 1.20 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 2.02 8.05 -52.48 -0.42 1.59 16 36 H 0.10 2.53 6.85 -51.93 -0.36 2.18 16 37 H 0.07 1.57 8.11 -51.93 -0.42 1.15 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -28.33 293.50 -8.09 -36.41 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.53 Total: 1.42 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.28 Total: -25.22 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.62 Total: -22.95 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.29 Total: -9.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.33 -8.09 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261343421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds