Wall clock time and date at job start Mon Mar 30 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99801 * 2 1 4 4 C 1.50692 * 109.68733 * 57.89539 * 3 2 1 5 5 H 1.07998 * 120.00372 * 236.52875 * 4 3 2 6 6 C 1.37875 * 119.99956 * 56.52781 * 4 3 2 7 7 N 1.31514 * 120.00136 * 354.08898 * 6 4 3 8 8 Si 1.86801 * 120.00179 * 174.09154 * 6 4 3 9 9 H 1.48491 * 109.47559 * 89.99927 * 8 6 4 10 10 H 1.48506 * 109.47190 * 210.00065 * 8 6 4 11 11 H 1.48505 * 109.46849 * 329.99707 * 8 6 4 12 12 C 1.53334 * 109.68511 * 297.32754 * 3 2 1 13 13 C 1.52736 * 108.38930 * 310.20161 * 12 3 2 14 14 C 1.50632 * 110.59153 * 308.96648 * 13 12 3 15 15 C 1.38909 * 117.75098 * 197.50093 * 14 13 12 16 16 C 1.37931 * 120.55049 * 180.19770 * 15 14 13 17 17 C 1.50701 * 120.11832 * 180.02562 * 16 15 14 18 18 C 1.38266 * 119.76977 * 0.03972 * 16 15 14 19 19 C 1.37930 * 119.76949 * 359.89551 * 18 16 15 20 20 C 1.37664 * 122.56827 * 17.54379 * 14 13 12 21 21 C 1.50627 * 122.57132 * 359.55616 * 20 14 13 22 22 H 1.09004 * 109.47072 * 303.30739 * 1 2 3 23 23 H 1.08998 * 109.46716 * 63.30324 * 1 2 3 24 24 H 1.09002 * 109.46895 * 183.30484 * 1 2 3 25 25 H 0.97003 * 120.00575 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.68196 * 190.46855 * 12 3 2 27 27 H 1.09005 * 109.67666 * 69.91720 * 12 3 2 28 28 H 1.08998 * 109.24753 * 188.68207 * 13 12 3 29 29 H 1.08994 * 109.25559 * 69.25294 * 13 12 3 30 30 H 1.08004 * 119.72770 * 0.21639 * 15 14 13 31 31 H 1.08996 * 109.46837 * 269.97964 * 17 16 15 32 32 H 1.08994 * 109.46940 * 29.97588 * 17 16 15 33 33 H 1.08999 * 109.47220 * 149.98037 * 17 16 15 34 34 H 1.08000 * 120.11297 * 179.87314 * 18 16 15 35 35 H 1.08007 * 119.73080 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.25618 * 137.92209 * 21 20 14 37 37 H 1.09007 * 109.25256 * 257.39198 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5278 2.0759 1.2019 5 1 1.0331 3.0269 1.0708 6 6 1.7180 1.5667 2.4690 7 7 2.2142 0.3588 2.6246 8 14 1.2709 2.5926 3.9647 9 1 -0.1415 2.3303 4.3406 10 1 2.1602 2.2300 5.0974 11 1 1.4388 4.0331 3.6450 12 6 1.6148 2.0469 -1.2826 13 6 1.8986 1.1340 -2.4738 14 6 3.3061 0.6013 -2.4095 15 6 3.8506 0.0707 -3.5721 16 6 5.1331 -0.4368 -3.5775 17 6 5.7143 -1.0096 -4.8445 18 6 5.8836 -0.4185 -2.4164 19 6 5.3453 0.1092 -1.2613 20 6 4.0547 0.6232 -1.2545 21 6 3.5328 1.1907 0.0395 22 1 -0.3633 0.5643 0.8589 23 1 -0.3633 0.4617 -0.9181 24 1 -0.3633 -1.0260 0.0592 25 1 2.3477 0.0003 3.5160 26 1 2.2005 2.9616 -1.3733 27 1 0.5531 2.2917 -1.2525 28 1 1.7696 1.6981 -3.3975 29 1 1.1976 0.2995 -2.4621 30 1 3.2649 0.0556 -4.4794 31 1 5.4891 -2.0747 -4.8984 32 1 5.2794 -0.5023 -5.7055 33 1 6.7949 -0.8663 -4.8458 34 1 6.8877 -0.8162 -2.4139 35 1 5.9319 0.1228 -0.3546 36 1 3.8227 0.5366 0.8618 37 1 3.9633 2.1796 0.1979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261343421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:47 Heat of formation + Delta-G solvation = -50.989904 kcal Electronic energy + Delta-G solvation = -18435.136343 eV Core-core repulsion = 15754.952635 eV Total energy + Delta-G solvation = -2680.183708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00333 -38.83007 -35.35025 -34.50801 -33.45110 -31.68225 -29.97572 -28.21874 -27.11388 -25.67846 -24.16921 -22.92840 -21.97680 -19.72256 -18.63589 -16.99926 -16.65972 -16.39261 -15.93719 -15.87430 -15.36876 -15.05958 -14.80989 -14.36505 -13.90441 -13.72152 -13.51959 -13.42538 -13.28237 -12.91531 -12.81098 -12.65369 -12.49577 -12.37600 -12.00834 -11.90261 -11.87674 -11.42686 -11.18528 -10.60286 -10.46424 -9.66360 -9.47433 -9.06560 -8.01015 -6.25470 0.60600 0.63530 1.38688 1.41968 1.50417 2.42106 2.95678 3.17007 3.72914 3.93626 4.05648 4.16966 4.29636 4.42505 4.47678 4.53862 4.63964 4.76603 4.82592 4.88028 4.92631 4.93936 5.00346 5.09962 5.13042 5.18214 5.23623 5.29565 5.33849 5.42706 5.54245 5.65141 5.74184 5.80441 5.97543 6.06855 6.23834 6.33392 6.78306 7.23062 7.52806 8.97495 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.007092 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.405248 B = 3946.897887 C = 4311.977158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.387 6.387 3 C 0.236 3.764 4 C -0.569 4.569 5 H 0.050 0.950 6 C 0.041 3.959 7 N -0.880 5.880 8 Si 0.939 3.061 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.269 1.269 12 C -0.134 4.134 13 C -0.067 4.067 14 C -0.081 4.081 15 C -0.130 4.130 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.085 4.085 21 C -0.051 4.051 22 H 0.021 0.979 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.257 0.743 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -0.959 -11.952 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.306 6.306 3 C 0.197 3.803 4 C -0.607 4.607 5 H 0.068 0.932 6 C -0.163 4.163 7 N -0.516 5.516 8 Si 0.765 3.235 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.194 1.194 12 C -0.172 4.172 13 C -0.103 4.103 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.104 4.104 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.085 4.085 21 C -0.088 4.088 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.018 -1.263 -11.830 12.557 hybrid contribution -0.533 0.755 1.612 1.858 sum 3.485 -0.508 -10.218 10.808 Atomic orbital electron populations 1.22208 0.83732 0.99666 0.98467 1.87821 1.17984 1.30284 1.94541 1.18919 0.89646 0.80904 0.90784 1.21745 1.40528 1.06096 0.92339 0.93176 1.25619 0.94354 0.95235 1.01080 1.70222 1.43427 1.15576 1.22370 0.85882 0.78042 0.79714 0.79908 1.20369 1.20992 1.19395 1.22058 1.00533 0.98436 0.96152 1.20333 0.92802 0.98806 0.98396 1.19793 0.96186 0.99135 0.92983 1.21230 0.95839 1.00094 0.97649 1.20145 0.94274 0.99346 0.96671 1.20754 1.01274 1.00921 0.93035 1.21135 1.00675 1.00769 0.92187 1.21309 0.95236 1.00143 0.98964 1.20058 0.94419 0.98706 0.95327 1.20220 0.96300 0.98716 0.93568 0.96079 0.95018 0.91895 0.93357 0.92609 0.92444 0.89638 0.91341 0.84463 0.90670 0.90580 0.90532 0.84192 0.86864 0.92076 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.53 10.04 113.37 1.14 3.67 16 2 O -0.39 -19.99 8.36 -148.98 -1.25 -21.24 16 3 C 0.24 11.66 0.30 -11.52 0.00 11.66 16 4 C -0.57 -30.64 6.62 25.60 0.17 -30.48 16 5 H 0.05 2.68 7.76 -2.91 -0.02 2.66 16 6 C 0.04 2.21 5.16 84.65 0.44 2.65 16 7 N -0.88 -50.43 11.26 21.45 0.24 -50.19 16 8 Si 0.94 43.02 29.54 68.60 2.03 45.04 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C -0.13 -5.59 4.30 30.62 0.13 -5.46 16 13 C -0.07 -2.40 5.23 29.74 0.16 -2.24 16 14 C -0.08 -3.07 5.67 -19.86 -0.11 -3.18 16 15 C -0.13 -4.06 9.27 22.36 0.21 -3.85 16 16 C -0.10 -2.95 5.87 -19.93 -0.12 -3.06 16 17 C -0.10 -1.97 10.02 71.24 0.71 -1.25 16 18 C -0.13 -3.97 9.71 22.20 0.22 -3.76 16 19 C -0.14 -5.20 9.61 22.36 0.21 -4.98 16 20 C -0.09 -3.61 5.62 -19.86 -0.11 -3.72 16 21 C -0.05 -2.48 4.39 29.74 0.13 -2.35 16 22 H 0.02 1.02 6.93 -2.38 -0.02 1.00 16 23 H 0.03 1.25 6.30 -2.39 -0.02 1.24 16 24 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 27 H 0.06 2.32 7.22 -2.38 -0.02 2.31 16 28 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 29 H 0.07 2.52 6.89 -2.39 -0.02 2.50 16 30 H 0.14 3.46 8.05 -2.91 -0.02 3.43 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 33 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.11 4.11 8.05 -2.91 -0.02 4.09 16 36 H 0.06 3.37 6.85 -2.39 -0.02 3.36 16 37 H 0.06 2.71 8.11 -2.38 -0.02 2.69 16 Total: -1.00 -62.24 293.50 5.23 -57.01 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.04 Total: 15.74 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 3.17 Total: -46.36 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.24 Total: -50.19 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.25 Total: -21.24 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.24 5.23 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261343421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.018 kcal (2) G-P(sol) polarization free energy of solvation -62.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds