Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99693 * 2 1 4 4 C 1.50701 * 109.71168 * 303.09901 * 3 2 1 5 5 H 1.08002 * 120.00148 * 124.39782 * 4 3 2 6 6 C 1.37875 * 120.00093 * 304.40622 * 4 3 2 7 7 N 1.31517 * 120.00115 * 6.04884 * 6 4 3 8 8 Si 1.86806 * 120.00182 * 186.04976 * 6 4 3 9 9 H 1.48500 * 109.46813 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46809 * 119.99686 * 8 6 4 11 11 H 1.48495 * 109.47100 * 239.99886 * 8 6 4 12 12 C 1.53240 * 109.68625 * 63.58478 * 3 2 1 13 13 C 1.52730 * 108.35455 * 49.82271 * 12 3 2 14 14 C 1.50636 * 110.57725 * 51.11111 * 13 12 3 15 15 C 1.38906 * 117.74643 * 162.47802 * 14 13 12 16 16 C 1.50701 * 119.72797 * 359.68501 * 15 14 13 17 17 C 1.37937 * 120.54794 * 179.66765 * 15 14 13 18 18 C 1.38267 * 119.76660 * 0.02562 * 17 15 14 19 19 C 1.37933 * 119.77275 * 0.10421 * 18 17 15 20 20 C 1.37659 * 122.56840 * 342.35963 * 14 13 12 21 21 C 1.50638 * 122.57023 * 0.44997 * 20 14 13 22 22 H 1.09000 * 109.47365 * 61.03013 * 1 2 3 23 23 H 1.08995 * 109.47212 * 181.03553 * 1 2 3 24 24 H 1.09003 * 109.47005 * 301.03320 * 1 2 3 25 25 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.69393 * 290.10513 * 12 3 2 27 27 H 1.09006 * 109.71991 * 169.55519 * 12 3 2 28 28 H 1.09006 * 109.25751 * 290.83003 * 13 12 3 29 29 H 1.08996 * 109.25847 * 171.39269 * 13 12 3 30 30 H 1.09000 * 109.46883 * 90.00210 * 16 15 14 31 31 H 1.09001 * 109.47579 * 210.00338 * 16 15 14 32 32 H 1.08999 * 109.47183 * 330.00371 * 16 15 14 33 33 H 1.07998 * 120.11680 * 180.02562 * 17 15 14 34 34 H 1.07993 * 120.11194 * 180.12868 * 18 17 15 35 35 H 1.07996 * 119.72558 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.25160 * 102.74331 * 21 20 14 37 37 H 1.09004 * 109.25109 * 222.20633 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5091 2.0849 -1.1885 5 1 1.0301 3.0420 -1.0436 6 6 1.6620 1.5761 -2.4608 7 7 2.1358 0.3611 -2.6306 8 14 1.1962 2.6126 -3.9435 9 1 0.6914 3.9321 -3.4860 10 1 2.3902 2.8101 -4.8041 11 1 0.1363 1.9193 -4.7188 12 6 1.6337 2.0381 1.2922 13 6 1.9356 1.1172 2.4726 14 6 3.3429 0.5872 2.3843 15 6 3.9049 0.0495 3.5352 16 6 3.1069 0.0205 4.8132 17 6 5.1872 -0.4584 3.5179 18 6 5.9202 -0.4321 2.3458 19 6 5.3649 0.1039 1.2025 20 6 4.0741 0.6170 1.2183 21 6 3.5319 1.1911 -0.0645 22 1 -0.3634 0.4977 -0.8991 23 1 -0.3633 -1.0274 0.0186 24 1 -0.3633 0.5298 0.8806 25 1 2.2437 0.0033 -3.5257 26 1 0.5716 2.2828 1.2796 27 1 2.2201 2.9527 1.3807 28 1 1.2357 0.2816 2.4649 29 1 1.8191 1.6743 3.4022 30 1 2.5449 -0.9117 4.8696 31 1 3.7830 0.0893 5.6655 32 1 2.4155 0.8630 4.8291 33 1 5.6172 -0.8752 4.4166 34 1 6.9239 -0.8301 2.3254 35 1 5.9382 0.1244 0.2876 36 1 3.9603 2.1805 -0.2248 37 1 3.8086 0.5409 -0.8945 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261350295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = -33.459320 kcal Electronic energy + Delta-G solvation = -18626.245477 eV Core-core repulsion = 15946.821952 eV Total energy + Delta-G solvation = -2679.423525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59893 -37.08579 -33.36219 -33.15775 -32.26936 -29.30214 -28.77331 -26.27582 -25.35782 -24.76049 -22.68153 -20.98566 -20.14472 -18.26791 -16.70050 -15.69653 -15.04075 -14.85581 -14.40746 -14.12553 -13.67814 -13.37917 -13.26963 -12.89966 -12.34358 -12.26474 -12.01676 -11.88588 -11.67497 -11.47638 -10.99837 -10.92487 -10.74104 -10.65746 -10.54255 -10.27111 -10.23696 -9.78558 -9.39306 -8.63603 -8.55749 -7.94795 -7.80639 -7.71310 -5.98233 -4.16589 1.95081 2.05746 3.25194 3.34757 3.37913 4.35581 4.37907 5.18912 5.28172 5.30976 5.49353 5.57224 5.62667 5.65987 5.81975 5.91709 6.03047 6.12435 6.17296 6.23049 6.31447 6.53016 6.59916 6.67779 6.70934 6.73380 6.81828 6.93762 6.96545 7.07213 7.14194 7.17982 7.25758 7.60380 7.64578 7.76132 7.91624 8.21329 8.79514 9.14249 9.56296 11.01622 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.007778 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.495761 B = 3598.846901 C = 4030.042150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.366 6.366 3 C 0.245 3.755 4 C -0.558 4.558 5 H 0.057 0.943 6 C 0.082 3.918 7 N -0.851 5.851 8 Si 0.881 3.119 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.284 1.284 12 C -0.140 4.140 13 C -0.073 4.073 14 C -0.067 4.067 15 C -0.097 4.097 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.043 4.043 21 C -0.061 4.061 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.010 0.990 25 H 0.259 0.741 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -0.325 9.625 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.284 6.284 3 C 0.207 3.793 4 C -0.596 4.596 5 H 0.075 0.925 6 C -0.124 4.124 7 N -0.486 5.486 8 Si 0.708 3.292 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.210 1.210 12 C -0.178 4.178 13 C -0.110 4.110 14 C -0.067 4.067 15 C -0.097 4.097 16 C -0.169 4.169 17 C -0.159 4.159 18 C -0.146 4.146 19 C -0.150 4.150 20 C -0.043 4.043 21 C -0.098 4.098 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.700 -0.639 9.496 9.893 hybrid contribution -0.340 0.667 -0.957 1.215 sum 2.360 0.028 8.538 8.858 Atomic orbital electron populations 1.22133 0.84810 0.98376 0.98708 1.87854 1.16665 1.29528 1.94386 1.18797 0.89379 0.81216 0.89939 1.21489 1.41291 1.05606 0.91171 0.92457 1.25000 0.94360 0.94414 0.98653 1.70111 1.42970 1.13862 1.21644 0.86737 0.78281 0.80881 0.83299 1.19749 1.20845 1.21037 1.22174 1.00610 0.98305 0.96702 1.20416 0.93096 0.99201 0.98258 1.19474 0.96033 0.99004 0.92146 1.19831 0.94830 0.99869 0.95178 1.20811 0.99487 1.02239 0.94390 1.20701 0.94658 1.02751 0.97806 1.20888 0.99324 1.01035 0.93354 1.21183 0.95724 1.00192 0.97937 1.20183 0.92868 0.95583 0.95712 1.20510 0.96308 0.99974 0.93026 0.93886 0.93496 0.97202 0.93142 0.92549 0.92555 0.90917 0.92411 0.91684 0.92414 0.91413 0.87216 0.87098 0.86756 0.91304 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 10.03 101.05 1.01 2.30 16 2 O -0.37 -9.27 8.29 -35.23 -0.29 -9.56 16 3 C 0.24 5.91 0.30 -91.78 -0.03 5.88 16 4 C -0.56 -14.61 6.68 -34.44 -0.23 -14.84 16 5 H 0.06 1.51 7.76 -52.49 -0.41 1.10 16 6 C 0.08 2.18 5.04 -17.82 -0.09 2.09 16 7 N -0.85 -23.55 11.29 55.43 0.63 -22.92 16 8 Si 0.88 20.53 29.54 -169.99 -5.02 15.50 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.14 -2.92 4.30 -26.75 -0.12 -3.04 16 13 C -0.07 -1.36 4.54 -28.05 -0.13 -1.49 16 14 C -0.07 -1.30 5.67 -104.62 -0.59 -1.89 16 15 C -0.10 -1.65 5.89 -104.48 -0.61 -2.26 16 16 C -0.11 -1.51 9.52 36.01 0.34 -1.16 16 17 C -0.14 -2.25 9.69 -39.68 -0.38 -2.63 16 18 C -0.13 -2.10 10.05 -39.68 -0.40 -2.50 16 19 C -0.13 -2.48 9.61 -39.44 -0.38 -2.86 16 20 C -0.04 -0.91 5.62 -104.61 -0.59 -1.50 16 21 C -0.06 -1.43 4.41 -28.05 -0.12 -1.55 16 22 H 0.04 1.04 6.96 -51.93 -0.36 0.68 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.01 0.20 6.29 -51.93 -0.33 -0.13 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 27 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.07 1.39 7.04 -51.93 -0.37 1.03 16 29 H 0.06 0.93 6.28 -51.93 -0.33 0.60 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.11 2.01 8.05 -52.49 -0.42 1.59 16 36 H 0.07 1.58 8.11 -51.93 -0.42 1.16 16 37 H 0.10 2.50 6.93 -51.93 -0.36 2.15 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -28.41 289.16 -7.98 -36.39 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.33 Total: 1.71 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.32 Total: -25.48 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.63 Total: -22.92 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.29 Total: -9.56 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.41 -7.98 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.930 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds