Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99693 * 2 1 4 4 C 1.50701 * 109.71168 * 303.09901 * 3 2 1 5 5 H 1.08002 * 120.00148 * 124.39782 * 4 3 2 6 6 C 1.37875 * 120.00093 * 304.40622 * 4 3 2 7 7 N 1.31517 * 120.00115 * 6.04884 * 6 4 3 8 8 Si 1.86806 * 120.00182 * 186.04976 * 6 4 3 9 9 H 1.48500 * 109.46813 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46809 * 119.99686 * 8 6 4 11 11 H 1.48495 * 109.47100 * 239.99886 * 8 6 4 12 12 C 1.53240 * 109.68625 * 63.58478 * 3 2 1 13 13 C 1.52730 * 108.35455 * 49.82271 * 12 3 2 14 14 C 1.50636 * 110.57725 * 51.11111 * 13 12 3 15 15 C 1.38906 * 117.74643 * 162.47802 * 14 13 12 16 16 C 1.50701 * 119.72797 * 359.68501 * 15 14 13 17 17 C 1.37937 * 120.54794 * 179.66765 * 15 14 13 18 18 C 1.38267 * 119.76660 * 0.02562 * 17 15 14 19 19 C 1.37933 * 119.77275 * 0.10421 * 18 17 15 20 20 C 1.37659 * 122.56840 * 342.35963 * 14 13 12 21 21 C 1.50638 * 122.57023 * 0.44997 * 20 14 13 22 22 H 1.09000 * 109.47365 * 61.03013 * 1 2 3 23 23 H 1.08995 * 109.47212 * 181.03553 * 1 2 3 24 24 H 1.09003 * 109.47005 * 301.03320 * 1 2 3 25 25 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.69393 * 290.10513 * 12 3 2 27 27 H 1.09006 * 109.71991 * 169.55519 * 12 3 2 28 28 H 1.09006 * 109.25751 * 290.83003 * 13 12 3 29 29 H 1.08996 * 109.25847 * 171.39269 * 13 12 3 30 30 H 1.09000 * 109.46883 * 90.00210 * 16 15 14 31 31 H 1.09001 * 109.47579 * 210.00338 * 16 15 14 32 32 H 1.08999 * 109.47183 * 330.00371 * 16 15 14 33 33 H 1.07998 * 120.11680 * 180.02562 * 17 15 14 34 34 H 1.07993 * 120.11194 * 180.12868 * 18 17 15 35 35 H 1.07996 * 119.72558 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.25160 * 102.74331 * 21 20 14 37 37 H 1.09004 * 109.25109 * 222.20633 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5091 2.0849 -1.1885 5 1 1.0301 3.0420 -1.0436 6 6 1.6620 1.5761 -2.4608 7 7 2.1358 0.3611 -2.6306 8 14 1.1962 2.6126 -3.9435 9 1 0.6914 3.9321 -3.4860 10 1 2.3902 2.8101 -4.8041 11 1 0.1363 1.9193 -4.7188 12 6 1.6337 2.0381 1.2922 13 6 1.9356 1.1172 2.4726 14 6 3.3429 0.5872 2.3843 15 6 3.9049 0.0495 3.5352 16 6 3.1069 0.0205 4.8132 17 6 5.1872 -0.4584 3.5179 18 6 5.9202 -0.4321 2.3458 19 6 5.3649 0.1039 1.2025 20 6 4.0741 0.6170 1.2183 21 6 3.5319 1.1911 -0.0645 22 1 -0.3634 0.4977 -0.8991 23 1 -0.3633 -1.0274 0.0186 24 1 -0.3633 0.5298 0.8806 25 1 2.2437 0.0033 -3.5257 26 1 0.5716 2.2828 1.2796 27 1 2.2201 2.9527 1.3807 28 1 1.2357 0.2816 2.4649 29 1 1.8191 1.6743 3.4022 30 1 2.5449 -0.9117 4.8696 31 1 3.7830 0.0893 5.6655 32 1 2.4155 0.8630 4.8291 33 1 5.6172 -0.8752 4.4166 34 1 6.9239 -0.8301 2.3254 35 1 5.9382 0.1244 0.2876 36 1 3.9603 2.1805 -0.2248 37 1 3.8086 0.5409 -0.8945 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261350295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = -48.020871 kcal Electronic energy + Delta-G solvation = -18626.876913 eV Core-core repulsion = 15946.821952 eV Total energy + Delta-G solvation = -2680.054961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08611 -38.77175 -34.97330 -34.70349 -34.10841 -30.81138 -30.41787 -27.52605 -27.25683 -26.53832 -24.27840 -22.59575 -21.50745 -19.93519 -18.65677 -17.14220 -16.72053 -16.47383 -16.00193 -15.90968 -15.27361 -14.98023 -14.77782 -14.43054 -13.71900 -13.66527 -13.56551 -13.50334 -13.29185 -12.96691 -12.82707 -12.58763 -12.41849 -12.29874 -12.06153 -11.99508 -11.84490 -11.42315 -11.12701 -10.61232 -10.44799 -9.65567 -9.27645 -9.21876 -8.01456 -6.25796 0.59773 0.67180 1.37127 1.41299 1.50476 2.41545 2.97731 3.16805 3.72111 3.97572 4.05668 4.19615 4.25804 4.38133 4.47771 4.58812 4.66411 4.74876 4.81143 4.87422 4.91079 4.97842 4.99026 5.08123 5.17337 5.18993 5.25410 5.28472 5.37239 5.43109 5.54753 5.67612 5.72988 5.82934 5.97519 6.07070 6.23071 6.34681 6.78137 7.23049 7.52623 8.97122 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.007778 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.495761 B = 3598.846901 C = 4030.042150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.387 6.387 3 C 0.237 3.763 4 C -0.569 4.569 5 H 0.050 0.950 6 C 0.040 3.960 7 N -0.879 5.879 8 Si 0.938 3.062 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.283 1.283 12 C -0.135 4.135 13 C -0.065 4.065 14 C -0.088 4.088 15 C -0.099 4.099 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.124 4.124 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.052 4.052 22 H 0.018 0.982 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.257 0.743 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.056 0.944 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -0.544 12.070 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.306 6.306 3 C 0.199 3.801 4 C -0.607 4.607 5 H 0.068 0.932 6 C -0.163 4.163 7 N -0.515 5.515 8 Si 0.764 3.236 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.209 1.209 12 C -0.173 4.173 13 C -0.101 4.101 14 C -0.088 4.088 15 C -0.099 4.099 16 C -0.167 4.167 17 C -0.154 4.154 18 C -0.141 4.141 19 C -0.170 4.170 20 C -0.076 4.076 21 C -0.089 4.089 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.000 -0.847 11.946 12.346 hybrid contribution -0.401 0.712 -1.670 1.859 sum 2.600 -0.135 10.276 10.601 Atomic orbital electron populations 1.22180 0.83684 0.99499 0.98466 1.87810 1.18027 1.30235 1.94536 1.18879 0.89553 0.80926 0.90781 1.21792 1.40960 1.05463 0.92502 0.93180 1.25622 0.94441 0.95270 1.01004 1.70239 1.44153 1.15230 1.21884 0.85840 0.77893 0.79555 0.80325 1.19309 1.20640 1.20886 1.22053 1.00483 0.98430 0.96295 1.20360 0.92771 0.98687 0.98295 1.19658 0.96363 1.00121 0.92659 1.20247 0.95590 0.98491 0.95604 1.20874 0.99773 1.02871 0.93207 1.21186 0.94123 1.01266 0.98811 1.21250 1.00678 0.99675 0.92547 1.21298 0.95311 1.01163 0.99207 1.20075 0.94374 0.97958 0.95210 1.20242 0.96282 0.98680 0.93709 0.96346 0.91805 0.95016 0.93387 0.92462 0.92669 0.91455 0.89384 0.90798 0.89839 0.90942 0.83474 0.83971 0.87041 0.92551 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.65 10.03 113.37 1.14 3.79 16 2 O -0.39 -20.00 8.29 -148.98 -1.23 -21.23 16 3 C 0.24 11.71 0.30 -11.55 0.00 11.71 16 4 C -0.57 -30.68 6.68 25.60 0.17 -30.51 16 5 H 0.05 2.69 7.76 -2.91 -0.02 2.67 16 6 C 0.04 2.18 5.04 84.65 0.43 2.61 16 7 N -0.88 -50.40 11.29 21.45 0.24 -50.15 16 8 Si 0.94 43.11 29.54 68.60 2.03 45.14 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C -0.13 -5.61 4.30 30.58 0.13 -5.48 16 13 C -0.06 -2.31 4.54 29.74 0.14 -2.18 16 14 C -0.09 -3.33 5.67 -19.86 -0.11 -3.44 16 15 C -0.10 -3.05 5.89 -19.78 -0.12 -3.17 16 16 C -0.11 -2.48 9.52 71.24 0.68 -1.80 16 17 C -0.14 -3.81 9.69 22.21 0.22 -3.59 16 18 C -0.12 -3.75 10.05 22.20 0.22 -3.53 16 19 C -0.15 -5.70 9.61 22.36 0.21 -5.49 16 20 C -0.08 -3.24 5.62 -19.86 -0.11 -3.35 16 21 C -0.05 -2.54 4.41 29.74 0.13 -2.40 16 22 H 0.02 0.89 6.96 -2.39 -0.02 0.88 16 23 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.03 1.26 6.29 -2.39 -0.01 1.25 16 25 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.06 2.32 7.13 -2.39 -0.02 2.30 16 27 H 0.05 2.26 8.10 -2.38 -0.02 2.24 16 28 H 0.07 2.47 7.04 -2.38 -0.02 2.45 16 29 H 0.09 2.58 6.28 -2.39 -0.01 2.56 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 32 H 0.07 1.55 5.94 -2.39 -0.01 1.54 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.11 4.07 8.05 -2.91 -0.02 4.05 16 36 H 0.06 2.75 8.11 -2.39 -0.02 2.73 16 37 H 0.06 3.30 6.93 -2.38 -0.02 3.28 16 Total: -1.00 -62.62 289.16 5.20 -57.42 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.05 Total: 15.67 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 3.12 Total: -46.83 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.24 Total: -50.15 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.23 Total: -21.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.62 5.20 -57.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.399 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds