Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38216 * 120.00279 * 179.76769 * 11 10 9 13 13 C 1.38262 * 119.99258 * 0.51002 * 12 11 10 14 14 C 1.38208 * 120.00504 * 359.74866 * 13 12 11 15 15 C 1.50702 * 120.00296 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.46807 * 160.02324 * 15 14 13 17 17 O 1.42897 * 109.46856 * 40.01647 * 15 14 13 18 18 C 1.53008 * 109.46665 * 280.01720 * 15 14 13 19 19 C 1.53776 * 113.61314 * 279.13759 * 18 15 14 20 20 C 1.53960 * 87.01692 * 220.04878 * 19 18 15 21 21 C 1.53779 * 113.60991 * 181.52992 * 18 15 14 22 22 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.00324 * 180.23309 * 12 11 10 28 28 H 1.08002 * 119.99498 * 179.72113 * 13 12 11 29 29 H 0.96699 * 114.00213 * 300.00044 * 17 15 14 30 30 H 1.08998 * 112.84845 * 50.33353 * 18 15 14 31 31 H 1.09001 * 113.61460 * 334.56628 * 19 18 15 32 32 H 1.08999 * 113.61435 * 105.47652 * 19 18 15 33 33 H 1.08994 * 113.53807 * 270.80964 * 20 19 18 34 34 H 1.09003 * 113.74499 * 139.94277 * 20 19 18 35 35 H 1.09002 * 113.61313 * 254.52850 * 21 18 15 36 36 H 1.08994 * 113.61887 * 25.43055 * 21 18 15 37 37 H 1.08001 * 119.99942 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5717 -5.2179 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5830 -5.2241 1.1734 15 6 4.0781 -5.8006 2.4748 16 1 3.9235 -5.0768 3.2749 17 8 5.4713 -6.0984 2.3643 18 6 3.3059 -7.0831 2.7910 19 6 1.9257 -6.8317 3.4209 20 6 2.2183 -8.0285 4.3440 21 6 3.7114 -7.7334 4.1242 22 6 2.6848 -4.1730 1.1803 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.3115 -3.7603 -2.1467 27 1 3.9178 -5.6263 -2.1589 28 1 4.7276 -6.5677 -0.0323 29 1 5.6831 -6.7375 1.6702 30 1 3.2832 -7.7808 1.9538 31 1 1.8533 -5.8807 3.9486 32 1 1.0955 -7.0007 2.7352 33 1 1.8969 -8.9850 3.9318 34 1 1.8907 -7.8796 5.3730 35 1 4.3207 -8.6294 4.0054 36 1 4.1281 -7.0295 4.8445 37 1 2.3384 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261352754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = -31.292084 kcal Electronic energy + Delta-G solvation = -17411.167670 eV Core-core repulsion = 14731.838124 eV Total energy + Delta-G solvation = -2679.329546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89046 -38.25251 -36.13020 -33.73819 -31.34971 -30.98087 -27.37492 -26.63809 -25.60993 -23.47240 -23.06252 -21.57402 -19.94094 -19.53445 -17.19607 -16.65059 -16.11727 -15.56728 -15.09552 -14.85182 -13.91546 -13.74393 -13.55902 -13.28850 -13.11699 -12.49314 -12.47767 -12.04364 -11.78211 -11.54522 -11.37783 -11.27345 -11.17637 -10.72446 -10.55618 -10.52363 -10.27254 -10.16071 -9.94911 -9.55811 -8.97089 -8.39358 -8.25027 -7.83721 -6.40358 -4.11636 1.86527 2.00661 3.42782 3.46108 3.62322 4.17360 4.39550 4.52991 4.54806 4.66534 4.74385 4.88728 5.11641 5.25621 5.31659 5.35300 5.47811 5.51206 5.64770 5.70710 5.75995 5.82110 5.88883 5.96926 6.03855 6.14958 6.26093 6.41544 6.47298 6.62178 6.95204 6.98609 7.07290 7.14908 7.59003 7.62068 7.65422 8.10077 8.41717 8.81659 9.59339 10.98655 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.005301 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.439368 B = 5281.004308 C = 5556.894357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.592 4.592 8 H 0.051 0.949 9 C 0.035 3.965 10 C -0.026 4.026 11 C -0.125 4.125 12 C -0.119 4.119 13 C -0.142 4.142 14 C -0.117 4.117 15 C 0.160 3.840 16 H 0.103 0.897 17 O -0.555 6.555 18 C -0.137 4.137 19 C -0.131 4.131 20 C -0.144 4.144 21 C -0.127 4.127 22 C -0.111 4.111 23 H 0.269 0.731 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.370 0.630 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -15.681 4.546 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.630 4.630 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.026 4.026 11 C -0.143 4.143 12 C -0.137 4.137 13 C -0.160 4.160 14 C -0.118 4.118 15 C 0.101 3.899 16 H 0.121 0.879 17 O -0.360 6.360 18 C -0.156 4.156 19 C -0.168 4.168 20 C -0.182 4.182 21 C -0.164 4.164 22 C -0.129 4.129 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.217 0.783 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.157 -13.609 5.039 15.764 hybrid contribution 0.117 -2.020 -0.613 2.114 sum 6.274 -15.630 4.426 17.414 Atomic orbital electron populations 1.70763 1.06860 1.30607 1.46534 1.25882 0.96492 1.02656 0.93637 0.83492 0.74695 0.74902 0.76878 1.21345 1.21399 1.20906 1.21921 0.94385 0.90798 1.55916 0.93078 1.18483 0.93232 0.91460 0.97037 1.20442 0.95836 0.94294 0.92020 1.21083 0.98372 0.96586 0.98218 1.20970 0.98151 0.97366 0.97247 1.20517 1.01991 1.01255 0.92287 1.20341 0.98851 0.97531 0.95031 1.20822 0.80078 0.94541 0.94419 0.87906 1.86593 1.23822 1.66211 1.59398 1.23248 0.97034 0.97584 0.97707 1.22867 0.96623 0.98767 0.98568 1.22870 0.96798 0.98580 0.99939 1.22822 0.96100 1.00475 0.97046 1.20830 0.97995 0.95799 0.98301 0.92075 0.96294 0.96273 0.86555 0.86951 0.87491 0.78310 0.89193 0.89792 0.91290 0.90476 0.91522 0.91744 0.89908 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.71 13.65 55.43 0.76 -26.95 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.52 29.90 -169.99 -5.08 20.43 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.59 -16.94 9.09 -34.44 -0.31 -17.26 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.89 4.42 -29.03 -0.13 0.76 16 10 C -0.03 -0.57 5.07 -104.63 -0.53 -1.10 16 11 C -0.12 -2.46 9.70 -39.59 -0.38 -2.84 16 12 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 13 C -0.14 -2.19 9.32 -39.58 -0.37 -2.56 16 14 C -0.12 -1.93 4.95 -104.62 -0.52 -2.45 16 15 C 0.16 2.20 2.96 -27.88 -0.08 2.12 16 16 H 0.10 1.48 7.84 -51.93 -0.41 1.08 16 17 O -0.56 -7.47 13.01 -35.23 -0.46 -7.93 16 18 C -0.14 -1.57 3.30 -89.81 -0.30 -1.86 16 19 C -0.13 -1.49 7.62 -25.83 -0.20 -1.69 16 20 C -0.14 -1.38 8.09 -25.82 -0.21 -1.59 16 21 C -0.13 -1.28 7.47 -25.92 -0.19 -1.47 16 22 C -0.11 -2.18 9.33 -39.58 -0.37 -2.55 16 23 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 24 H 0.02 0.50 7.96 -51.93 -0.41 0.09 16 25 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 26 H 0.12 2.25 8.06 -52.48 -0.42 1.82 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.28 6.79 -52.49 -0.36 0.93 16 29 H 0.37 3.74 7.50 45.56 0.34 4.09 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.99 7.99 -51.93 -0.41 0.57 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.12 2.24 8.04 -52.49 -0.42 1.81 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -31.20 308.64 -9.18 -40.38 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.96 Total: 3.87 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: -4.08 Total: -34.46 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.76 Total: -26.95 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.46 Total: -7.93 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.20 -9.18 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.088 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds